FvH4_6g39710

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014132
Physical Location & Seq
Forward (+)
31354953 .. 31357746
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39710.t1

Sequence Viewer

Length: 1419 bp
ATGGGAAACATGAAGTGCATGAAGAGGAGGTCCAACACCATCATCTTGGTTCCATATCCAGCACAGGGACATGTTACTCCCATGCTCAAGTTAGCCTCCGCCTTCCTCCACCGCGGCTTTAATCCGGTGCTGGTCACACCGGACTACATTCACCGCCAGATTGTCCCCAAGCTCGAATCCAATGAAATTGAGTGCATGCCAATCCCGGAAGGGTTGGACAAGGACACCCCGAGGGACTTCTTCGCCATCGAGAAGGCCATGGAGAACAACATGCCTGTTCATCTAGAGAAGCTTGTTCATCAGCTTCAACAAGATGGAGGAGTAGTCGTGTGCATAGTCATTGATTTGCTTGCGTCGTGGGCTATAGAAGTAGCCAACCGATGCCGGGTTCCAGCGGCCGGATTCTGGCCGGCCATGCTGGCGACGTACCGGCTGATCGGAGCCATTCCGGAGATGGTCAGGACAGGTCTCATCACTGATGCAGGGTTTCCAAAGCAATTAGGTGGTACATGCTGCTTACCTAATCAACCCATGCTATCAAGTGAAGAGCTTCCATGGTTGATAGGCACTCCAGCAGCAAGAAAAGCAAGATTCAGATTTTGGACTAGAACCCTAGAGAGATCAGAATCCCTCCAATGGCTCCTTGTCAATTCATTCCCAAATGAACATTGCTTGGACGATAAGCAATCACAACATCAACAATTTGATCTGAATCAAACCAAAATCCAACCTCAATTGCAAGCTTTCCCTATTGGTCCCTTGAGCAAGCTCACAGCCACCAAGAACCCTAGCTTTTGGGAAGAAGACACAACCTGCTTAAGCTGGCTTGACAAGCAGCAACCCAACACTGTGATTTACATCTCCTTTGGGAGTTGGGTTAATCCCATTGGAGAAGCTAAGGTTAAAAGCTTGGCATTGGCACTTGAAGCCTTGGGGAAGCCATTCATTTGGGTATTGGGGTCTTCATGGCGTGAGGGATTACCAGTTGGGTACTTAGAAAAGGTATCAAGGACAGGCAAAGTTGTGTCTTGGGCACCACAAATGGAGGTCTTGAAGCACAAAGCAGTTGGGTGTTATTTGACACATTGTGGGTGGAATTCAACAATGGAGGCCATTCAGTGCCAAAAGAGACTCTTGTGCTATCCTGTGGCTGGTGACCAGTTTGTGAATTGTGGCTACATTGTAGATTTGTGGAGAATTGGGGTGAGATTGGGTGGGTTTGGGGAGAAGGATGTTGAGGAAGGATTGAAGAAGGTGATGGAGGAGGATGAGATGGGGAATAGGTTGAGGAAGTTGAGTGAGAGAACTACGGGAGAGGAGGCTAGTTCTAGAGCTGTGTCTAATCTCACGGCCTTCATTGATCAACTTAAGATGTTCACAGTTGGATATTCTAATGGTGTTTATGGCTATGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

473

Amino Acids

53.05

Weight (kDa)

7.51

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 282 - 433 1.8e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22250
fragaria_vesca FvH4_6g39710
malus_domestica MD09G1137500.v1.1 MD17G1127800.v1.1
prunus_persica Prupe.3G187400_v2.0.a1
pyrus_communis pycom17g12010
rosa_chinensis RchiOBHm_Chr2g0153791
rosa_laevigata RLG00000020724
rosa_multiflora Rmu_sc0011717.1_g000002 Rmu_sc0038427.1_g000001
rosa_roxburghii Rroxscaffold_2G00094750
rosa_rugosa Rorug02G0441800.1
rosa_samantha Rh2AG505800 Rh2BG515400 Rh2CG491300 Rh2DG527800
rosa_wichuraiana Rw2G041500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 1033
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 5 cut(s) 99, 112, 114, 154, 395
AcoI YGGCCR 3 cut(s) 396, 407, 411
AcsI RAATTY 1 cut(s) 1096
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 3 cut(s) 428, 508, 992
AfiI CCNNNNNNNGG 6 cut(s) 65, 385, 398, 405, 636, 1151
AflII CTTAAG 2 cut(s) 817, 1367
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 5 cut(s) 308, 926, 1054, 1101, 1249
Alw26I GTCTC 2 cut(s) 473, 1123
Ama87I CYCGRG 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 6 cut(s) 255, 396, 407, 411, 1110, 1350
ApeKI GCWGC 3 cut(s) 513, 575, 835
ApoI RAATTY 1 cut(s) 1096
Asp700I GAANNNNTTC 2 cut(s) 549, 941
AspS9I GGNCC 2 cut(s) 30, 755
AsuC2I CCSGG 2 cut(s) 206, 386
AsuHPI GGTGA 4 cut(s) 143, 1166, 1216, 1267
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 2 cut(s) 30, 755
BaeGI GKGCMC 1 cut(s) 1036
BanI GGYRCC 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 810, 954
BbvI GCAGC 3 cut(s) 500, 587, 847
BccI CCATC 6 cut(s) 47, 254, 308, 448, 1252, 1267
BceAI ACGGC 1 cut(s) 1365
BclI TGATCA 1 cut(s) 1360
BcnI CCSGG 2 cut(s) 206, 386
BcoDI GTCTC 2 cut(s) 473, 1123
BfaI CTAG 6 cut(s) 284, 606, 614, 789, 1323, 1329
BfmI CTRYAG 2 cut(s) 363, 1415
BfrI CTTAAG 2 cut(s) 817, 1367
BfuAI ACCTGC 1 cut(s) 821
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 5 cut(s) 115, 396, 514, 576, 836
BlsI GCNGC 5 cut(s) 116, 397, 515, 577, 837
Bme1390I CCNGG 2 cut(s) 206, 386
Bme18I GGWCC 2 cut(s) 30, 755
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 30, 755
BmiI GGNNCC 6 cut(s) 51, 390, 442, 641, 757, 1035
BmrFI CCNGG 2 cut(s) 206, 386
BmsI GCATC 2 cut(s) 371, 469
BpiI GAAGAC 2 cut(s) 810, 954
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 71, 781
BpuMI CCSGG 2 cut(s) 206, 386
BsaBI GATNNNNATC 3 cut(s) 625, 711, 857
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 5 cut(s) 112, 230, 258, 554, 930
BsaWI WCCGGW 3 cut(s) 124, 139, 448
BsaXI ACNNNNNCTCC 4 cut(s) 309, 312, 339, 342
Bsc4I CCNNNNNNNGG 6 cut(s) 65, 385, 398, 405, 636, 1151
Bse118I RCCGGY 2 cut(s) 409, 429
Bse1I ACTGG 2 cut(s) 983, 1159
Bse3DI GCAATG 1 cut(s) 667
Bse8I GATNNNNATC 3 cut(s) 625, 711, 857
BseAI TCCGGA 1 cut(s) 448
BseDI CCNNGG 5 cut(s) 112, 230, 258, 554, 930
BseGI GGATG 2 cut(s) 1237, 1273
BseJI GATNNNNATC 3 cut(s) 625, 711, 857
BseLI CCNNNNNNNGG 6 cut(s) 65, 385, 398, 405, 636, 1151
BseMI GCAATG 1 cut(s) 667
BseNI ACTGG 2 cut(s) 983, 1159
BseRI GAGGAG 4 cut(s) 40, 333, 1277, 1331
BseSI GKGCMC 1 cut(s) 1036
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 3 cut(s) 500, 587, 847
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 6 cut(s) 257, 398, 409, 413, 1112, 1352
BshNI GGYRCC 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 8 cut(s) 125, 140, 206, 385, 399, 410, 430, 449
BslFI GGGAC 4 cut(s) 81, 149, 248, 741
BslI CCNNNNNNNGG 6 cut(s) 65, 385, 398, 405, 636, 1151
BsmAI GTCTC 2 cut(s) 473, 1123
BsmFI GGGAC 4 cut(s) 81, 149, 248, 741
BsnI GGCC 6 cut(s) 257, 398, 409, 413, 1112, 1352
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 5 cut(s) 435, 620, 706, 1360, 1411
Bsp19I CCATGG 2 cut(s) 258, 554
BspACI CCGC 5 cut(s) 99, 112, 114, 154, 395
BspANI GGCC 6 cut(s) 257, 398, 409, 413, 1112, 1352
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 6 cut(s) 51, 390, 442, 641, 757, 1035
BspMI ACCTGC 1 cut(s) 821
BspQI GCTCTTC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 1033
BspTI CTTAAG 2 cut(s) 817, 1367
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 2 cut(s) 409, 429
BsrI ACTGG 2 cut(s) 983, 1159
BssAI RCCGGY 2 cut(s) 409, 429
BssECI CCNNGG 5 cut(s) 112, 230, 258, 554, 930
BssMI GATC 5 cut(s) 435, 620, 706, 1360, 1411
BssT1I CCWWGG 3 cut(s) 258, 554, 930
Bst4CI ACNGT 2 cut(s) 850, 1381
Bst6I CTCTTC 2 cut(s) 17, 540
BstAFI CTTAAG 2 cut(s) 817, 1367
BstC8I GCNNGC 7 cut(s) 197, 351, 411, 420, 741, 767, 824
BstDEI CTNAG 2 cut(s) 897, 994
BstDSI CCRYGG 3 cut(s) 112, 258, 554
BstEII GGTNACC 1 cut(s) 1154
BstF5I GGATG 2 cut(s) 1237, 1273
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 5 cut(s) 438, 623, 709, 1363, 1414
BstMAI GTCTC 2 cut(s) 473, 1123
BstMBI GATC 5 cut(s) 435, 620, 706, 1360, 1411
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 6 cut(s) 359, 415, 419, 584, 832, 926
BstNSI RCATGY 4 cut(s) 74, 199, 274, 513
BstPI GGTNACC 1 cut(s) 1154
BstSCI CCNGG 2 cut(s) 204, 384
BstSFI CTRYAG 2 cut(s) 363, 1415
BstSLI GKGCMC 1 cut(s) 1036
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 500, 587, 847
BstV2I GAAGAC 2 cut(s) 810, 954
BstXI CCANNNNNNTGG 2 cut(s) 46, 948
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 6 cut(s) 257, 398, 409, 413, 1112, 1352
BtgI CCRYGG 3 cut(s) 112, 258, 554
BtsCI GGATG 2 cut(s) 1237, 1273
BtsIMutI CAGTG 3 cut(s) 474, 846, 1124
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 7 cut(s) 197, 351, 411, 420, 741, 767, 824
Cfr10I RCCGGY 2 cut(s) 409, 429
Cfr13I GGNCC 2 cut(s) 30, 755
Cfr42I CCGCGG 1 cut(s) 115
CseI GACGC 1 cut(s) 342
Csp6I GTAC 3 cut(s) 427, 507, 991
CviQI GTAC 3 cut(s) 427, 507, 991
DdeI CTNAG 2 cut(s) 897, 994
DpnI GATC 5 cut(s) 437, 622, 708, 1362, 1413
DpnII GATC 5 cut(s) 435, 620, 706, 1360, 1411
DraIII CACNNNGTG 1 cut(s) 1088
EaeI YGGCCR 3 cut(s) 396, 407, 411
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 17, 540
EarI CTCTTC 2 cut(s) 17, 540
EciI GGCGGA 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 3 cut(s) 258, 554, 930
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 30, 755
Eco52I CGGCCG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 1154
EcoO65I GGTNACC 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 1096
EcoT14I CCWWGG 3 cut(s) 258, 554, 930
ErhI CCWWGG 3 cut(s) 258, 554, 930
FalI AAGNNNNNCTT 2 cut(s) 1118, 1150
FaqI GGGAC 4 cut(s) 81, 149, 248, 741
FbaI TGATCA 1 cut(s) 1360
Fnu4HI GCNGC 5 cut(s) 115, 396, 514, 576, 836
FokI GGATG 2 cut(s) 1244, 1280
FseI GGCCGGCC 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 115, 396, 514, 576, 836
FspBI CTAG 6 cut(s) 284, 606, 614, 789, 1323, 1329
GluI GCNGC 5 cut(s) 115, 396, 514, 576, 836
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 6 cut(s) 257, 398, 409, 413, 1112, 1352
HapII CCGG 8 cut(s) 125, 140, 206, 385, 399, 410, 430, 449
HgaI GACGC 1 cut(s) 342
HindIII AAGCTT 3 cut(s) 290, 741, 907
HinfI GANTC 6 cut(s) 176, 402, 591, 626, 712, 1131
HpaII CCGG 8 cut(s) 125, 140, 206, 385, 399, 410, 430, 449
HphI GGTGA 4 cut(s) 143, 1166, 1216, 1267
Hpy166II GTNNAC 1 cut(s) 1377
Hpy188I TCNGA 4 cut(s) 440, 596, 625, 711
Hpy188III TCNNGA 6 cut(s) 250, 284, 449, 460, 1051, 1329
Hpy8I GTNNAC 1 cut(s) 1377
Hpy99I CGWCG 2 cut(s) 358, 427
HpyAV CCTTC 7 cut(s) 112, 203, 247, 1222, 1235, 1246, 1363
HpyCH4III ACNGT 2 cut(s) 850, 1381
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 18, 195, 333, 482, 739
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 415, 419, 584, 832, 926
HpyF3I CTNAG 2 cut(s) 897, 994
HpySE526I ACGT 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 448
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 1360
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 5 cut(s) 435, 620, 706, 1360, 1411
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 440, 645
Lsp1109I GCAGC 3 cut(s) 500, 587, 847
LweI GCATC 2 cut(s) 371, 469
MaeI CTAG 6 cut(s) 284, 606, 614, 789, 1323, 1329
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 3 cut(s) 73, 133, 1154
MalI GATC 5 cut(s) 437, 622, 708, 1362, 1413
MboI GATC 5 cut(s) 435, 620, 706, 1360, 1411
MboII GAAGA 7 cut(s) 34, 232, 557, 812, 815, 954, 1261
MfeI CAATTG 1 cut(s) 734
MhlI GDGCHC 1 cut(s) 1036
MluCI AATT 8 cut(s) 186, 497, 649, 701, 734, 1096, 1168, 1197
MlyI GAGTC 1 cut(s) 1125
MmeI TCCRAC 4 cut(s) 57, 195, 751, 1363
MroI TCCGGA 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 409
MroXI GAANNNNTTC 2 cut(s) 549, 941
MseI TTAA 5 cut(s) 120, 818, 879, 903, 1368
MspA1I CMGCKG 2 cut(s) 114, 395
MspCI CTTAAG 2 cut(s) 817, 1367
MspI CCGG 8 cut(s) 125, 140, 206, 385, 399, 410, 430, 449
MspR9I CCNGG 2 cut(s) 206, 386
MunI CAATTG 1 cut(s) 734
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 6 cut(s) 359, 415, 419, 584, 832, 926
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 2 cut(s) 206, 386
NcoI CCATGG 2 cut(s) 258, 554
NdeII GATC 5 cut(s) 435, 620, 706, 1360, 1411
NgoMIV GCCGGC 1 cut(s) 409
NlaIV GGNNCC 6 cut(s) 51, 390, 442, 641, 757, 1035
NmuCI GTSAC 2 cut(s) 133, 1154
NspI RCATGY 4 cut(s) 74, 199, 274, 513
PaeI GCATGC 1 cut(s) 199
PciI ACATGT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 540
PdiI GCCGGC 1 cut(s) 411
PdmI GAANNNNTTC 2 cut(s) 549, 941
PfeI GAWTC 5 cut(s) 176, 402, 591, 626, 712
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 5 cut(s) 116, 397, 515, 577, 837
PleI GAGTC 1 cut(s) 1125
PpsI GAGTC 1 cut(s) 1125
PscI ACATGT 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 1154
PspN4I GGNNCC 6 cut(s) 51, 390, 442, 641, 757, 1035
PspPI GGNCC 2 cut(s) 30, 755
RigI GGCCGGCC 1 cut(s) 413
RsaI GTAC 3 cut(s) 428, 508, 992
RsaNI GTAC 3 cut(s) 427, 507, 991
SacII CCGCGG 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 5 cut(s) 120, 818, 879, 903, 1368
SatI GCNGC 5 cut(s) 115, 396, 514, 576, 836
Sau3AI GATC 5 cut(s) 435, 620, 706, 1360, 1411
Sau96I GGNCC 2 cut(s) 30, 755
SchI GAGTC 1 cut(s) 1125
ScrFI CCNGG 2 cut(s) 206, 386
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 2 cut(s) 371, 469
SfcI CTRYAG 2 cut(s) 363, 1415
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SinI GGWCC 2 cut(s) 30, 755
SmlI CTYRAG 4 cut(s) 86, 760, 817, 1367
SmoI CTYRAG 4 cut(s) 86, 760, 817, 1367
SphI GCATGC 1 cut(s) 199
Sse9I AATT 8 cut(s) 186, 497, 649, 701, 734, 1096, 1168, 1197
SsiI CCGC 5 cut(s) 99, 112, 114, 154, 395
SspMI CTAG 6 cut(s) 284, 606, 614, 789, 1323, 1329
StyD4I CCNGG 2 cut(s) 204, 384
StyI CCWWGG 3 cut(s) 258, 554, 930
TaaI ACNGT 2 cut(s) 850, 1381
TaiI ACGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 174, 249
TasI AATT 8 cut(s) 186, 497, 649, 701, 734, 1096, 1168, 1197
TauI GCSGC 2 cut(s) 117, 398
TfiI GAWTC 5 cut(s) 176, 402, 591, 626, 712
Tru1I TTAA 5 cut(s) 120, 818, 879, 903, 1368
Tru9I TTAA 5 cut(s) 120, 818, 879, 903, 1368
TscAI CASTG 3 cut(s) 481, 853, 1124
TseFI GTSAC 2 cut(s) 133, 1154
TseI GCWGC 3 cut(s) 513, 575, 835
Tsp45I GTSAC 2 cut(s) 133, 1154
TspRI CASTG 3 cut(s) 481, 853, 1124
Vha464I CTTAAG 2 cut(s) 817, 1367
VpaK11BI GGWCC 2 cut(s) 30, 755
XapI RAATTY 1 cut(s) 1096
XbaI TCTAGA 2 cut(s) 283, 1328
XceI RCATGY 4 cut(s) 74, 199, 274, 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmnI GAANNNNTTC 2 cut(s) 549, 941
XspI CTAG 6 cut(s) 284, 606, 614, 789, 1323, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.