AT3G23635

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020143
Physical Location & Seq
Reverse (-)
8497679 .. 8498390
712 bp
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UTR
Exon/CDS
Intron
AT3G23635.1

Sequence Viewer

Length: 138 bp
ATGAAGATGTCGGAGAGACGAGTTGGGTCCTATCGTAAATCGACACTCAGGTGTTGGGATTGGTGTAAGGAGCAGAGAACGCGTGCTTATATCATCTGGAGGTGTTTGATTTTCTTGTTACGGTGGGATGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

45

Amino Acids

5.82

Weight (kDa)

9.81

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 23 - 41 2.3e-09 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23635 AT4G13395
malus_domestica MD02G1062300.v1.1
prunus_persica Prupe.7G227100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0091061
rosa_wichuraiana Rw2G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 27
AvaII GGWCC 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 118
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 10
BsmBI CGTCTC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstUI CGCG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 10
FaiI YATR 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 47
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 2 cut(s) 34, 82
MaeIII GTNAC 1 cut(s) 117
MboII GAAGA 1 cut(s) 16
MluI ACGCGT 1 cut(s) 80
MnlI CCTC 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 49
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 27
SetI ASST 2 cut(s) 53, 104
SgeI CNNG 6 cut(s) 32, 61, 93, 95, 109, 127
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.