MD02G1062300.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0020143
Physical Location & Seq
Forward (+)
5006369 .. 5006551
183 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1062300.v1.1.491

Sequence Viewer

Length: 183 bp
ATGGCAACTTCTTACTTCCAACAACCGCAAACGCGCCAAGCTCGACGCCGCAAAAGCCACCGGAAGATCGGGTTCAGGAAACGATGCCTGATGATGGCAAAGCAACAGAAGACACGGTTCTACATCCTCGGACGCTGCGTTTCCATGCTTCTCTGCTGGCACGACCACTCCATCTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

61

Amino Acids

7.32

Weight (kDa)

11.26

Isoelectric Point (pI)

75.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 34 - 52 1.5e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23635 AT4G13395
malus_domestica MD02G1062300.v1.1
prunus_persica Prupe.7G227100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0091061
rosa_wichuraiana Rw2G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 2 cut(s) 26, 49
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 88, 179
BisI GCNGC 2 cut(s) 49, 136
BlsI GCNGC 2 cut(s) 50, 137
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 26, 49
BspFNI CGCG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 36
CseI GACGC 2 cut(s) 54, 141
CviAII CATG 1 cut(s) 145
CviJI RGCY 2 cut(s) 41, 57
CviKI_1 RGCY 2 cut(s) 41, 57
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
FaeI CATG 1 cut(s) 148
FaiI YATR 1 cut(s) 146
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 49, 136
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 49, 136
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 49, 136
HapII CCGG 1 cut(s) 61
HgaI GACGC 2 cut(s) 54, 141
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HpaII CCGG 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 131, 178
Hpy188III TCNNGA 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 4 cut(s) 61, 74, 101, 142
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 74
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 76, 121
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 137
MspI CCGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PkrI GCNGC 2 cut(s) 50, 137
SatI GCNGC 2 cut(s) 49, 136
Sau3AI GATC 1 cut(s) 66
SetI ASST 1 cut(s) 43
SfaNI GCATC 1 cut(s) 74
SsiI CCGC 2 cut(s) 26, 49
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 43
TauI GCSGC 1 cut(s) 51
TseI GCWGC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.