AT4G13395

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0020143
Physical Location & Seq
Reverse (-)
7785428 .. 7786161
734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13395.1

Sequence Viewer

Length: 168 bp
ATGTGTCTTTTTATGTCCAATTCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGGTTCGGAGATCGGTGTTTACTGATGGCCAAACAGCAACGAACCCGACTTTACATACTTCGACGATGTGTCTCCATGCTGCTTTGCTGGCACGACCACTCTATTTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

55

Amino Acids

6.56

Weight (kDa)

10.09

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 29 - 47 4.1e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23635 AT4G13395
malus_domestica MD02G1062300.v1.1
prunus_persica Prupe.7G227100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0091061
rosa_wichuraiana Rw2G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 81
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 130
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 83
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 45
BseBI CCWGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 83
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 143
CsiI ACCWGGT 1 cut(s) 53
CviAII CATG 1 cut(s) 130
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
DriI GACNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 133
FaiI YATR 3 cut(s) 14, 110, 131
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 133
HpaII CCGG 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 62, 163
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 40, 59, 67, 127
Lsp1109I GCAGC 1 cut(s) 120
MabI ACCWGGT 1 cut(s) 53
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 15, 20
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 56
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 55
SetI ASST 1 cut(s) 59
SexAI ACCWGGT 1 cut(s) 53
SgeI CNNG 7 cut(s) 58, 66, 67, 111, 142, 154, 158
Sse9I AATT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 53
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 19
TseI GCWGC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.