AT3G26740

Light regulated protein Lir1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014393
Physical Location & Seq
Forward (+)
9827682 .. 9828917
1236 bp
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UTR
Exon/CDS
Intron
AT3G26740.1

Sequence Viewer

Length: 426 bp
ATGCAGGGAGCTCTGTTTATCAAACCAACTATTCTTCTTCCTCTTCCTTCTTCAGTTTCTTCTCCAAAACTCACTTTTCTTCTTCCTCACGCAACCAAAGCTTCAAGACTCTCATCTCTCAGATCAAACAACTCATCATCATCATCATCCTTAACGTCTGACCCTAACACCGTCGACTATAACTCCTCCATCCTTTCTGTTTTTCCAGCTGAAGCATGCGAAGTAATCAGTGGATACGCTTGTTCTGCTGATATTTACCCTGAAGTCAAGCTCGATACAAAGCCCGTCTCACGTCCCGTGGCTTCAGAGCCCGTTGACAGAGAATACGAAGAGTATAACAGCCCCAAAACGGTTTTCCGTGAAGAGGCCTGCGATGATCTTGGAGGAGAATTCTGTGAACCTGACTTTCAAAAAGATGCCAACTAG

Protein Analysis

141

Amino Acids

15.31

Weight (kDa)

4.56

Isoelectric Point (pI)

65.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lir1 PF07207 1 - 133 1.4e-60 Light regulated protein Lir1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26740
fragaria_vesca FvH4_4g22790 FvH4_4g22790 FvH4_4g22790
malus_domestica MD16G1129900.v1.1
prunus_persica Prupe.1G216700_v2.0.a1
pyrus_communis pycom16g11020
rosa_chinensis RchiOBHm_Chr4g0429011
rosa_laevigata RLG00000007104
rosa_multiflora Rmu_sc0008629.1_g000017
rosa_rugosa Rorug04G0232000
rosa_samantha Rh4AG288000 Rh4BG294200 Rh4CG309700 Rh4DG291100
rosa_wichuraiana Rw0G014070 Rw4G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 4 cut(s) 36, 231, 282, 288
AfiI CCNNNNNNNGG 2 cut(s) 349, 364
AgsI TTSAA 2 cut(s) 105, 410
AjiI CACGTC 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 4 cut(s) 11, 101, 209, 271
AluI AGCT 4 cut(s) 11, 101, 209, 271
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BanII GRGCYC 2 cut(s) 13, 312
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 1 cut(s) 197
BciVI GTATCC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 424
BfuI GTATCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 293
BmsI GCATC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 364
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 146, 189
BseLI CCNNNNNNNGG 2 cut(s) 349, 364
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 175, 399
BshFI GGCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 349, 364
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 13, 312
Bsp143I GATC 2 cut(s) 122, 376
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 122, 376
Bst4CI ACNGT 2 cut(s) 172, 352
Bst6I CTCTTC 3 cut(s) 48, 324, 357
BstC8I GCNNGC 2 cut(s) 217, 370
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 146, 189
BstKTI GATC 2 cut(s) 125, 379
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 122, 376
BstMWI GCNNNNNNNGC 2 cut(s) 98, 245
BstNSI RCATGY 1 cut(s) 219
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 146, 189
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 217, 370
CviAII CATG 1 cut(s) 216
CviJI RGCY 9 cut(s) 11, 101, 209, 271, 283, 302, 310, 342, 368
CviKI_1 RGCY 9 cut(s) 11, 101, 209, 271, 283, 302, 310, 342, 368
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 124, 378
DpnII GATC 2 cut(s) 122, 376
Eam1104I CTCTTC 3 cut(s) 48, 324, 357
EarI CTCTTC 3 cut(s) 48, 324, 357
Ecl136II GAGCTC 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 2 cut(s) 13, 312
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 4 cut(s) 36, 231, 282, 288
EcoICRI GAGCTC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 389
EcoT38I GRGCYC 2 cut(s) 13, 312
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 1 cut(s) 219
FaiI YATR 3 cut(s) 180, 217, 336
FaqI GGGAC 1 cut(s) 279
FatI CATG 1 cut(s) 215
FblI GTMKAC 1 cut(s) 174
FokI GGATG 2 cut(s) 133, 176
FriOI GRGCYC 2 cut(s) 13, 312
FspBI CTAG 1 cut(s) 424
HaeIII GGCC 1 cut(s) 368
Hin1II CATG 1 cut(s) 219
HincII GTYRAC 2 cut(s) 175, 316
HindII GTYRAC 2 cut(s) 175, 316
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 108
Hpy166II GTNNAC 3 cut(s) 175, 316, 398
Hpy188I TCNGA 3 cut(s) 122, 160, 307
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 3 cut(s) 175, 316, 398
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 172, 352
HpyCH4IV ACGT 2 cut(s) 155, 292
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 245
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 155, 292
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 2 cut(s) 122, 376
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 219, 273, 382, 414
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 424
MaeII ACGT 2 cut(s) 155, 292
MalI GATC 2 cut(s) 124, 378
MboI GATC 2 cut(s) 122, 376
MboII GAAGA 9 cut(s) 26, 29, 35, 42, 51, 71, 74, 341, 374
MhlI GDGCHC 2 cut(s) 13, 312
MluCI AATT 1 cut(s) 389
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 5 cut(s) 51, 96, 196, 358, 377
MseI TTAA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 98, 245
NdeII GATC 2 cut(s) 122, 376
NlaIII CATG 1 cut(s) 219
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 368
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 13
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 2 cut(s) 122, 376
SchI GAGTC 1 cut(s) 102
SduI GDGCHC 2 cut(s) 13, 312
SetI ASST 7 cut(s) 13, 103, 158, 211, 273, 295, 403
SfaNI GCATC 1 cut(s) 406
SphI GCATGC 1 cut(s) 219
Sse9I AATT 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 368
SspMI CTAG 1 cut(s) 424
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 368
TaaI ACNGT 2 cut(s) 172, 352
TaiI ACGT 2 cut(s) 158, 295
TaqI TCGA 2 cut(s) 174, 273
TasI AATT 1 cut(s) 389
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.