Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014393

Physical Location & Seq

Genomic Coordinates Forward (+)

25483483 .. 25484590

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGGCCACTCTACAGCTCTCACCACCATCACTCCTTTCCTTTCTAACACCGACCACCCCGACCAAGTCCCTGGTCTTGCCGTTTAGGTCAGCTACTCCAAGGGCACAATCTTCGAGATTCCCCCAGCTCAAGGCAACCAACAACGTGACCTCTGATCCTTCAACAGTTGATTACAGCTCCAATGCAACTTCGGTTTTTCCAGCAGAGGCTTGTGAAACGATCGGAGGAGAAGCTTGTGATGTCGAAATGTATCCTGAGGTGAAGCTTGAACCACAAGGGAAGAGCACCGCAGCCACGCCTGGTAAAGAGCGGGAGGATAGAGATTATCTAGAGTATGACAGCCCCAAAACGGTCTTCCCTGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTTTGCGAGCCGGAGTACCAGAAAGGAGTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0098796 GO:0098807 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lir1

Protein Analysis

143

Amino Acids

15.44

Weight (kDa)

4.44

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lir1	PF07207	1 - 134	3.5e-47	Light regulated protein Lir1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26740
fragaria_vesca	FvH4_4g22790 FvH4_4g22790 FvH4_4g22790
malus_domestica	MD16G1129900.v1.1
prunus_persica	Prupe.1G216700_v2.0.a1
pyrus_communis	pycom16g11020
rosa_chinensis	RchiOBHm_Chr4g0429011
rosa_laevigata	RLG00000007104
rosa_multiflora	Rmu_sc0008629.1_g000017
rosa_rugosa	Rorug04G0232000
rosa_samantha	Rh4AG288000 Rh4BG294200 Rh4CG309700 Rh4DG291100
rosa_wichuraiana	Rw0G014070 Rw4G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	291, 313
AclWI	GGATC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	133, 352, 367
AgsI	TTSAA	2 cut(s)	165, 272
AjnI	CCWGG	2 cut(s)	72, 301
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	6 cut(s)	19, 95, 130, 180, 236, 268
AluI	AGCT	6 cut(s)	19, 95, 130, 180, 236, 268
Alw21I	GWGCWC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	15, 274
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	2 cut(s)	74, 303
BciVI	GTATCC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	332, 427
BfmI	CTRYAG	2 cut(s)	14, 363
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	74, 303
BmrFI	CCNGG	2 cut(s)	74, 303
BpiI	GAAGAC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	72, 101
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 352, 367
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	74, 303
BseDI	CCNNGG	2 cut(s)	72, 101
BseLI	CCNNNNNNNGG	3 cut(s)	133, 352, 367
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	243, 402
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	133, 352, 367
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	109, 290
Bsp143I	GATC	3 cut(s)	157, 222, 379
BspACI	CCGC	2 cut(s)	291, 313
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	72, 101
BssMI	GATC	3 cut(s)	157, 222, 379
BssNAI	GTATAC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	101
Bst1107I	GTATAC	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	74, 303
Bst4CI	ACNGT	2 cut(s)	169, 355
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	6, 401
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	3 cut(s)	160, 225, 382
BstMBI	GATC	3 cut(s)	157, 222, 379
BstMCI	CGRYCG	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	74, 303
BstSCI	CCNGG	2 cut(s)	72, 301
BstSFI	CTRYAG	2 cut(s)	14, 363
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	6, 401
Csp6I	GTAC	1 cut(s)	409
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	3 cut(s)	159, 224, 381
DpnII	GATC	3 cut(s)	157, 222, 379
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	72, 301
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaiI	YATR	2 cut(s)	339, 424
FaqI	GGGAC	1 cut(s)	55
FauI	CCCGC	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	332, 427
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	404
HindIII	AAGCTT	2 cut(s)	234, 266
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	15, 274
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	157, 227
Hpy188III	TCNNGA	3 cut(s)	117, 257, 332
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	169, 355
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	4, 188, 365
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	157, 222, 379
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	332, 427
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	159, 224, 381
MbiI	CCGCTC	1 cut(s)	313
MboI	GATC	3 cut(s)	157, 222, 379
MboII	GAAGA	3 cut(s)	105, 295, 349
MhlI	GDGCHC	2 cut(s)	109, 290
MnlI	CCTC	7 cut(s)	163, 202, 221, 253, 310, 361, 380
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	74, 303
MvaI	CCWGG	2 cut(s)	74, 303
NdeII	GATC	3 cut(s)	157, 222, 379
NmuCI	GTSAC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	295
Ple19I	CGATCG	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	72, 301
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	72, 301
PstI	CTGCAG	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	157, 222, 379
ScrFI	CCNGG	2 cut(s)	74, 303
SduI	GDGCHC	2 cut(s)	109, 290
SfcI	CTRYAG	2 cut(s)	14, 363
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	2 cut(s)	291, 313
SspMI	CTAG	2 cut(s)	332, 427
StyD4I	CCNGG	2 cut(s)	72, 301
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	169, 355
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	116, 246
TfiI	GAWTC	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	332, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.