RchiOBHm_Chr4g0429011

Light-regulated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014393
Physical Location & Seq
Forward (+)
53924102 .. 53924769
668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39785

Sequence Viewer

Length: 357 bp
ATGCAGGCCACTCTACAGCTCTCACCACCATCACTCCTTGCCCTTCTAACACCGACCACCACCACCAAGTCCCTGGTCTTGCCGTGTAGGTCCACTACTCCAAGGGCAAAATCTTCGAGATACCCCCTGCTCAAGGCAACCAATAATGTGACCTCCGATCCTTCAACAGTTGATTACAGCTCCAATGCAACTTCGGTTTTTCCAGCAGAGGCTTGTGAGACTGTCGGAGGAGATGCTTGTGATGCCGAAATGTATCCTGAAGTGAAGCTTGAACCACAAGAGAAGAGCACCGCAGCCAAAACTGGTAAAGAGCTGCAGGATAGAGATTATCTAGAGTATGACAGCCCCAAGACGTAA

Protein Analysis

118

Amino Acids

12.73

Weight (kDa)

4.9

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lir1 PF07207 1 - 118 2.5e-34 Light regulated protein Lir1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26740
fragaria_vesca FvH4_4g22790 FvH4_4g22790 FvH4_4g22790
malus_domestica MD16G1129900.v1.1
prunus_persica Prupe.1G216700_v2.0.a1
pyrus_communis pycom16g11020
rosa_chinensis RchiOBHm_Chr4g0429011
rosa_laevigata RLG00000007104
rosa_multiflora Rmu_sc0008629.1_g000017
rosa_rugosa Rorug04G0232000
rosa_samantha Rh4AG288000 Rh4BG294200 Rh4CG309700 Rh4DG291100
rosa_wichuraiana Rw0G014070 Rw4G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 291
AclWI GGATC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 165, 272
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 19, 180, 268, 313
AluI AGCT 4 cut(s) 19, 180, 268, 313
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 293, 313
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 300, 305
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 14, 314
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 2 cut(s) 294, 314
BlsI GCNGC 2 cut(s) 295, 315
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 223, 232
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 72, 101
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 72, 101
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 300, 305
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 290
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 72, 101
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 169, 223
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 131
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 14, 314
BstV1I GCAGC 2 cut(s) 300, 305
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 90
CviJI RGCY 8 cut(s) 8, 19, 180, 212, 268, 296, 313, 345
CviKI_1 RGCY 8 cut(s) 8, 19, 180, 212, 268, 296, 313, 345
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaiI YATR 1 cut(s) 339
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 294, 314
Fsp4HI GCNGC 2 cut(s) 294, 314
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 294, 314
HaeIII GGCC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 266
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 157, 227
Hpy188III TCNNGA 3 cut(s) 117, 257, 332
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 53, 171
HpyCH4III ACNGT 2 cut(s) 169, 223
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 4, 188, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 353
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 59, 86, 140, 216, 270, 288, 302
Lsp1109I GCAGC 2 cut(s) 300, 305
LweI GCATC 2 cut(s) 223, 232
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 105, 295
MhlI GDGCHC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 3 cut(s) 163, 202, 221
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 295, 315
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 278
SatI GCNGC 2 cut(s) 294, 314
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 290
SetI ASST 7 cut(s) 21, 92, 155, 182, 270, 315, 356
SfaNI GCATC 2 cut(s) 223, 232
SfcI CTRYAG 2 cut(s) 14, 314
SinI GGWCC 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 1 cut(s) 291
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 169, 223
TaiI ACGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 116
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 293, 313
Tsp45I GTSAC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 90
XagI CCTNNNNNAGG 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.