AT3G26810

auxin signaling f-box

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
9867652 .. 9870782
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26810.1

Sequence Viewer

Length: 1728 bp
ATGAATTATTTCCCAGATGAAGTAATAGAGCATGTATTCGACTTTGTAACATCTCACAAAGACAGGAATGCTATATCTCTTGTATGCAAATCATGGTACAAGATTGAAAGATACAGTAGGCAAAAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTTCGGAGATTCCCATGTCTAAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTCAATTTGGTTCCTCATGAATGGGGAGGTTTTGTGCTACCTTGGATTGAGGCTTTGGCTAGAAGCCGTGTAGGACTTGAAGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTTGAGCTGCTTTCTCGTTCTTTTGTCAATTTTAAGTCTTTGGTCCTTGTTAGCTGTGAAGGTTTTACCACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGGCATCTTCGGGATCTTGATTTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGGTTAAGTTGTTTCCCAGACACTTGCACGACTCTTGTCACGCTAAACTTTGCGTGCCTCGAAGGAGAAACTAATCTGGTTGCTCTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTCTGAAGCTAAATCGTGCAGTACCGTTAGATGCACTCGCAAGGTTAATGGCGTGTGCGCCGCAGATAGTTGACTTAGGAGTAGGGTCTTATGAGAATGACCCAGATTCCGAGTCTTACTTGAAACTCATGGCTGTCATAAAGAAATGCACCTCGTTGAGGAGTTTGTCGGGTTTTCTAGAGGCTGCTCCTCACTGTCTCTCAGCTTTCCACCCAATATGTCATAACCTCACCTCCTTGAATCTTAGTTACGCAGCTGAGATTCATGGTAGCCACCTTATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCGGTTATGGATTTTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAAAGAGTTACAAGAGCTTAGGGTTTTTCCATCTGATTTACTCGGTGGAGGCAACACAGCTGTGACCGAAGAAGGTCTAGTTGCCATCTCGGCAGGCTGCCCTAAGCTCCACTCTATACTCTACTTCTGCCAACAAATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCCAAATTTCATCCGTTTCCGACTCTGCATCCTCGAGCCAAACAAACCCGATCACGTCACATCTCAACCTCTAGACGAAGGCTTTGGAGCAATCGTCAAAGCCTGCAAGAGCCTGAGAAGGCTTTCTCTCTCAGGTCTCCTTACAGACCAAGTCTTCCTCTACATCGGAATGTACGCGAATCAGCTCGAGATGCTCTCCATAGCCTTTGCAGGAGATACAGACAAAGGCATGCTATATGTGTTGAATGGTTGCAAAAAGATGAAGAAACTAGAGATAAGGGATAGTCCGTTTGGGGACACGGCGCTTCTTGCTGATGTGAGCAAGTATGAAACAATGCGATCCCTTTGGATGTCTTCATGTGAAGTCACACTCAGTGGATGCAAAAGGCTCGCAGAGAAAGCGCCATGGCTCAATGTAGAGATCATAAACGAGAATGATAATAACCGGATGGAAGAAAACGGACACGAGGGGAGGCAGAAAGTGGATAAGTTGTATCTGTACCGGACTGTGGTTGGGACAAGAATGGATGCGCCGCCATTTGTGTGGATTCTCTAA

Protein Analysis

575

Amino Acids

64.6

Weight (kDa)

7.17

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 41 8.7e-19 F-box
Transp_inhibit PF18791 61 - 107 1e-22 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12820 AT3G26810
fragaria_vesca FvH4_6g54140
malus_domestica MD09G1005000.v1.1 MD17G1009000.v1.1
prunus_persica Prupe.3G311800_v2.0.a1
pyrus_communis pycom111g00370
rosa_chinensis RchiOBHm_Chr2g0176311
rosa_laevigata RLG00000022402
rosa_multiflora Rmu_sc0000405.1_g000027
rosa_roxburghii Rroxscaffold_2G00076580
rosa_rugosa Rorug02G0593100
rosa_samantha Rh2CG645600 Rh2DG696400
rosa_wichuraiana Rw2G055070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1349
AciI CCGC 5 cut(s) 224, 441, 689, 940, 1706
AclWI GGATC 2 cut(s) 471, 1506
AcsI RAATTY 1 cut(s) 1177
AcuI CTGAAG 2 cut(s) 653, 920
AdeI CACNNNGTG 1 cut(s) 1547
AfaI GTAC 4 cut(s) 98, 651, 1346, 1673
AfiI CCNNNNNNNGG 2 cut(s) 786, 1681
AflIII ACRYGT 1 cut(s) 995
AgsI TTSAA 9 cut(s) 107, 205, 232, 308, 322, 751, 868, 980, 1417
AjiI CACGTC 1 cut(s) 1228
AleI CACNNNNGTG 1 cut(s) 1058
Alw26I GTCTC 3 cut(s) 618, 830, 1313
AlwI GGATC 2 cut(s) 471, 1506
Ama87I CYCGRG 2 cut(s) 1205, 1358
ApeKI GCWGC 5 cut(s) 355, 812, 881, 1095, 1145
ApoI RAATTY 1 cut(s) 1177
ArsI GACNNNNNNTTYG 2 cut(s) 1238, 1270
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 2 cut(s) 8, 1294
AspLEI GCGC 4 cut(s) 688, 1477, 1576, 1705
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 850, 977
AvaI CYCGRG 2 cut(s) 1205, 1358
AvaII GGWCC 1 cut(s) 391
BauI CACGAG 1 cut(s) 1637
BbsI GAAGAC 2 cut(s) 1318, 1518
BbvI GCAGC 5 cut(s) 342, 799, 893, 1082, 1157
BccI CCATC 5 cut(s) 322, 416, 1036, 1091, 1615
BceAI ACGGC 2 cut(s) 279, 1488
BcgI CGANNNNNNTGC 2 cut(s) 1543, 1577
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 618, 830, 1313
BfaI CTAG 7 cut(s) 288, 593, 609, 806, 1076, 1244, 1442
BfoI RGCGCY 2 cut(s) 1478, 1577
BglI GCCNNNNNGGC 1 cut(s) 1088
BisI GCNGC 8 cut(s) 356, 441, 689, 813, 882, 1096, 1146, 1706
BlsI GCNGC 8 cut(s) 357, 442, 690, 814, 883, 1097, 1147, 1707
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 2 cut(s) 1205, 1358
BmgBI CACGTC 1 cut(s) 1228
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 6 cut(s) 463, 649, 1209, 1353, 1541, 1690
BoxI GACNNNNGTC 1 cut(s) 542
BpiI GAAGAC 2 cut(s) 1318, 1518
BplI GAGNNNNNCTC 2 cut(s) 1352, 1384
Bpu10I CCTNAGC 3 cut(s) 314, 1016, 1101
BpuEI CTTGAG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 489
BsaI GGTCTC 2 cut(s) 618, 1313
BsaJI CCNNGG 2 cut(s) 269, 1577
BsaWI WCCGGW 2 cut(s) 1617, 1674
BsaXI ACNNNNNCTCC 6 cut(s) 246, 276, 845, 875, 1251, 1281
Bsc4I CCNNNNNNNGG 2 cut(s) 786, 1681
Bse3DI GCAATG 1 cut(s) 922
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 269, 1577
BseGI GGATG 7 cut(s) 333, 1182, 1200, 1527, 1556, 1626, 1705
BseLI CCNNNNNNNGG 2 cut(s) 786, 1681
BseMI GCAATG 1 cut(s) 922
BseMII CTCAG 5 cut(s) 843, 876, 1277, 1317, 1558
BseRI GAGGAG 2 cut(s) 802, 807
BseXI GCAGC 5 cut(s) 342, 799, 893, 1082, 1157
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 1349
BshVI ATCGAT 1 cut(s) 489
BsiHKCI CYCGRG 2 cut(s) 1205, 1358
BsiSI CCGG 2 cut(s) 1618, 1675
BslFI GGGAC 2 cut(s) 1481, 1702
BslI CCNNNNNNNGG 2 cut(s) 786, 1681
BsmAI GTCTC 3 cut(s) 618, 830, 1313
BsmFI GGGAC 2 cut(s) 1481, 1702
BsmI GAATGC 1 cut(s) 73
Bso31I GGTCTC 2 cut(s) 618, 1313
BsoBI CYCGRG 2 cut(s) 1205, 1358
Bsp143I GATC 5 cut(s) 463, 493, 1222, 1511, 1593
Bsp19I CCATGG 1 cut(s) 1577
BspACI CCGC 5 cut(s) 224, 441, 689, 940, 1706
BspCNI CTCAG 5 cut(s) 842, 877, 1278, 1316, 1557
BspDI ATCGAT 1 cut(s) 489
BspFNI CGCG 1 cut(s) 1349
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 2 cut(s) 471, 1506
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 2 cut(s) 618, 1313
BsrDI GCAATG 1 cut(s) 922
BssECI CCNNGG 2 cut(s) 269, 1577
BssMI GATC 5 cut(s) 463, 493, 1222, 1511, 1593
BssSI CACGAG 1 cut(s) 1637
BssT1I CCWWGG 2 cut(s) 269, 1577
Bst2BI CACGAG 1 cut(s) 1637
Bst4CI ACNGT 7 cut(s) 116, 143, 654, 824, 1159, 1172, 1681
Bst6I CTCTTC 2 cut(s) 303, 317
BstC8I GCNNGC 6 cut(s) 452, 562, 1093, 1276, 1403, 1563
BstDSI CCRYGG 1 cut(s) 1577
BstENI CCTNNNNNAGG 1 cut(s) 784
BstF5I GGATG 7 cut(s) 333, 1182, 1200, 1527, 1556, 1626, 1705
BstFNI CGCG 1 cut(s) 1349
BstH2I RGCGCY 2 cut(s) 1478, 1577
BstHHI GCGC 4 cut(s) 688, 1477, 1576, 1705
BstKTI GATC 5 cut(s) 466, 496, 1225, 1514, 1596
BstMAI GTCTC 3 cut(s) 618, 830, 1313
BstMBI GATC 5 cut(s) 463, 493, 1222, 1511, 1593
BstMWI GCNNNNNNNGC 6 cut(s) 437, 919, 1088, 1363, 1481, 1571
BstNSI RCATGY 3 cut(s) 35, 999, 1405
BstPAI GACNNNNGTC 1 cut(s) 542
BstUI CGCG 1 cut(s) 1349
BstV1I GCAGC 5 cut(s) 342, 799, 893, 1082, 1157
BstV2I GAAGAC 2 cut(s) 1318, 1518
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 1716
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 1577
BtrI CACGTC 1 cut(s) 1228
BtsCI GGATG 7 cut(s) 333, 1182, 1200, 1527, 1556, 1626, 1705
BtsIMutI CAGTG 3 cut(s) 417, 820, 1552
Cac8I GCNNGC 6 cut(s) 452, 562, 1093, 1276, 1403, 1563
CciI TCATGA 1 cut(s) 244
CfoI GCGC 4 cut(s) 688, 1477, 1576, 1705
Cfr13I GGNCC 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 489
Csp6I GTAC 4 cut(s) 97, 650, 1345, 1672
CviQI GTAC 4 cut(s) 97, 650, 1345, 1672
DpnI GATC 5 cut(s) 465, 495, 1224, 1513, 1595
DpnII GATC 5 cut(s) 463, 493, 1222, 1511, 1593
DraIII CACNNNGTG 1 cut(s) 1547
Eam1104I CTCTTC 2 cut(s) 303, 317
EarI CTCTTC 2 cut(s) 303, 317
Eco130I CCWWGG 2 cut(s) 269, 1577
Eco31I GGTCTC 2 cut(s) 618, 1313
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 2 cut(s) 653, 920
Eco88I CYCGRG 2 cut(s) 1205, 1358
EcoNI CCTNNNNNAGG 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 269, 1577
ErhI CCWWGG 2 cut(s) 269, 1577
FaqI GGGAC 2 cut(s) 1481, 1702
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 8 cut(s) 356, 441, 689, 813, 882, 1096, 1146, 1706
FokI GGATG 7 cut(s) 340, 1169, 1187, 1534, 1563, 1633, 1712
Fsp4HI GCNGC 8 cut(s) 356, 441, 689, 813, 882, 1096, 1146, 1706
FspBI CTAG 7 cut(s) 288, 593, 609, 806, 1076, 1244, 1442
GlaI GCGC 4 cut(s) 687, 1476, 1575, 1704
GluI GCNGC 8 cut(s) 356, 441, 689, 813, 882, 1096, 1146, 1706
HaeII RGCGCY 2 cut(s) 1478, 1577
HapII CCGG 2 cut(s) 1618, 1675
HhaI GCGC 4 cut(s) 688, 1477, 1576, 1705
Hin6I GCGC 4 cut(s) 686, 1475, 1574, 1703
HinP1I GCGC 4 cut(s) 686, 1475, 1574, 1703
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 911
HpaII CCGG 2 cut(s) 1618, 1675
HphI GGTGA 2 cut(s) 850, 977
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 6 cut(s) 174, 633, 739, 1033, 1193, 1340
Hpy188III TCNNGA 9 cut(s) 158, 245, 350, 461, 467, 593, 806, 1244, 1360
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 5 cut(s) 401, 563, 1064, 1244, 1284
HpyCH4III ACNGT 7 cut(s) 116, 143, 654, 824, 1159, 1172, 1681
HpyCH4IV ACGT 1 cut(s) 1227
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 919, 1088, 1363, 1481, 1571
HpySE526I ACGT 1 cut(s) 1227
HspAI GCGC 4 cut(s) 686, 1475, 1574, 1703
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 5 cut(s) 463, 493, 1222, 1511, 1593
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 3 cut(s) 820, 1110, 1259
Lsp1109I GCAGC 5 cut(s) 342, 799, 893, 1082, 1157
LweI GCATC 6 cut(s) 463, 649, 1209, 1353, 1541, 1690
MaeI CTAG 7 cut(s) 288, 593, 609, 806, 1076, 1244, 1442
MaeII ACGT 1 cut(s) 1227
MalI GATC 5 cut(s) 465, 495, 1224, 1513, 1595
MboI GATC 5 cut(s) 463, 493, 1222, 1511, 1593
MboII GAAGA 8 cut(s) 320, 334, 449, 1079, 1318, 1447, 1518, 1637
MflI RGATCY 1 cut(s) 463
MluCI AATT 5 cut(s) 4, 232, 376, 445, 1177
MlyI GAGTC 5 cut(s) 355, 532, 637, 749, 1188
MmeI TCCRAC 1 cut(s) 1216
MroXI GAANNNNTTC 2 cut(s) 8, 1294
MseI TTAA 5 cut(s) 153, 381, 512, 674, 909
MslI CAYNNNNRTG 3 cut(s) 1058, 1340, 1714
MspA1I CMGCKG 3 cut(s) 884, 940, 1058
MspI CCGG 2 cut(s) 1618, 1675
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 1349
MwoI GCNNNNNNNGC 6 cut(s) 437, 919, 1088, 1363, 1481, 1571
NcoI CCATGG 1 cut(s) 1577
NdeII GATC 5 cut(s) 463, 493, 1222, 1511, 1593
NlaIV GGNNCC 1 cut(s) 240
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 5 cut(s) 544, 965, 1060, 1228, 1537
NspI RCATGY 3 cut(s) 35, 999, 1405
OliI CACNNNNGTG 1 cut(s) 1058
PaeI GCATGC 1 cut(s) 1405
PaeR7I CTCGAG 2 cut(s) 1205, 1358
PagI TCATGA 1 cut(s) 244
PciI ACATGT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 2 cut(s) 8, 1294
PfeI GAWTC 6 cut(s) 177, 734, 868, 889, 1351, 1720
PflFI GACNNNGTC 1 cut(s) 1322
PkrI GCNGC 8 cut(s) 357, 442, 690, 814, 883, 1097, 1147, 1707
PleI GAGTC 5 cut(s) 354, 532, 636, 748, 1188
PpsI GAGTC 5 cut(s) 354, 532, 636, 748, 1188
PscI ACATGT 1 cut(s) 995
PshAI GACNNNNGTC 1 cut(s) 542
PshBI ATTAAT 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 391
PspXI VCTCGAGB 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 1322
PvuII CAGCTG 2 cut(s) 884, 1058
RsaI GTAC 4 cut(s) 98, 651, 1346, 1673
RsaNI GTAC 4 cut(s) 97, 650, 1345, 1672
RseI CAYNNNNRTG 3 cut(s) 1058, 1340, 1714
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 5 cut(s) 153, 381, 512, 674, 909
SatI GCNGC 8 cut(s) 356, 441, 689, 813, 882, 1096, 1146, 1706
Sau3AI GATC 5 cut(s) 463, 493, 1222, 1511, 1593
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 5 cut(s) 355, 532, 637, 749, 1188
SfaNI GCATC 6 cut(s) 463, 649, 1209, 1353, 1541, 1690
Sfr274I CTCGAG 2 cut(s) 1205, 1358
SinI GGWCC 1 cut(s) 391
SlaI CTCGAG 2 cut(s) 1205, 1358
SmiMI CAYNNNNRTG 3 cut(s) 1058, 1340, 1714
SmlI CTYRAG 3 cut(s) 350, 1205, 1358
SmoI CTYRAG 3 cut(s) 350, 1205, 1358
SphI GCATGC 1 cut(s) 1405
Sse9I AATT 5 cut(s) 4, 232, 376, 445, 1177
SsiI CCGC 5 cut(s) 224, 441, 689, 940, 1706
SspMI CTAG 7 cut(s) 288, 593, 609, 806, 1076, 1244, 1442
StyI CCWWGG 2 cut(s) 269, 1577
TaaI ACNGT 7 cut(s) 116, 143, 654, 824, 1159, 1172, 1681
TaiI ACGT 1 cut(s) 1230
TaqI TCGA 5 cut(s) 39, 489, 567, 1206, 1359
TaqII GACCGA 1 cut(s) 1079
TasI AATT 5 cut(s) 4, 232, 376, 445, 1177
TauI GCSGC 3 cut(s) 443, 691, 1708
TfiI GAWTC 6 cut(s) 177, 734, 868, 889, 1351, 1720
Tru1I TTAA 5 cut(s) 153, 381, 512, 674, 909
Tru9I TTAA 5 cut(s) 153, 381, 512, 674, 909
TscAI CASTG 3 cut(s) 424, 827, 1552
TseFI GTSAC 5 cut(s) 544, 965, 1060, 1228, 1537
TseI GCWGC 5 cut(s) 355, 812, 881, 1095, 1145
Tsp45I GTSAC 5 cut(s) 544, 965, 1060, 1228, 1537
TspGWI ACGGA 3 cut(s) 1175, 1449, 1647
TspRI CASTG 3 cut(s) 424, 827, 1552
Tth111I GACNNNGTC 1 cut(s) 1322
VpaK11BI GGWCC 1 cut(s) 391
VspI ATTAAT 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 784
XapI RAATTY 1 cut(s) 1177
XbaI TCTAGA 3 cut(s) 592, 805, 1243
XceI RCATGY 3 cut(s) 35, 999, 1405
XhoI CTCGAG 2 cut(s) 1205, 1358
XmnI GAANNNNTTC 2 cut(s) 8, 1294
XspI CTAG 7 cut(s) 288, 593, 609, 806, 1076, 1244, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.