Rroxscaffold_2G00076580

Protein AUXIN SIGNALING F-BOX

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
363754 .. 367060
3307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076580.1

Sequence Viewer

Length: 1719 bp
ATGAATTACTTCCCAGACGAGGTAATAGAGCACATCTTCGACTTCGTGACGAAGCAGCGGGACCGAAACGCTGTGTCGTTGGTGTGTAAATCATGGTATAGAATAGAAAGATTTAGCAGGGAGAGAGTGGTCATTGGGAATTGCTATGCGATCAGTTCAGAGAGAGTGATCGCACGCTTTCCGGGCCTCAAGTCCCTTACTTTGAAGGGAAAGCCTCACTTTGCTGACTTCAATTTGGTCCCTCATGGCTGGGGAGGCTCCGTTGACCCTTGGATTGAAGCCCTGGCTGAGAGCCGTGTTGGCTTGGAGGAGCTCAGGCTCAAGAGAATGGTGGTCTCCGATGAAATCCTTGACTTGCTTTCCAGGTCCTTTCTGAATTTTAAGTCTTTGGTTCTTGTTAGCTGCGAAGGTTTTACCACCGATGGCCTCGCTGCTATAGCTGCCAATTGTAGGTTTCTTAGGGAGCTGGATCTGCAGGAAAATGACATTGATGATCATAGAGGCCATTGGCTTAGCTGCTTTCCCGATAGCTGTACCTCTCTTGTATCCCTTAATTTCGCATGCCTGAAAGGAGAAATTAATCTAGCTGCTCTTGTGAGACTTGTGGCTAGATCTCCGAACCTCAAAGTCCTGAGGGTTAACCGTGCTGTCCCTCCTGACACCCTCCAAAAAGTATTGATGCAAGCACCTCAACTCGTTGATTTGGGCACCGGGTCTTATGTCCTAGATCCTGACTCTGAATCCTACAGCAAACTGAAGGCTACAATTCTTAAATGTAGATCAATCAAGAGCTTGTCAGGGTTTTTAGAGGTTGCTCCTCGTTCTCTCCCAGCCTTTTACCCTATATGCTTGACCCTGACATCCTTGAACCTTAGCTACGCTCCTGGAGTTCATGGTAGTGATCTCATAAAGTTAATTCGCCAGTGTGGGAGGCTTCAGCGTTTATGGATACTGGATTGTATCGGAGACAAAGGACTAGCAGTTGTAGCATCAACTTGTAAAGAATTGCAGGAATTGAGAGTTTTTCCCTCTGATCCATTTGGAGTTGGGCATGCCGCTGTAACAGAAGAAGGCCTTGTTGCCATATCTGCTGGCTGCCCAAAGCTTCATTCATTGCTTTACTTCTGCCAGCAGATGACCAATGCTGCTCTTATAACTGTTGCCAAGAACTGCCCTAATTTCATACGGTTCAGGTTGTGCATCCTTGATCCCACAAAACCTGACCCTGTCACTATGCAGCCACTAGATGAAGGTTTTGGGGCAATTGTTCAGGCGTGCAAAAAGCTTAGGCGGTTGTCACTCTCTGGCCTTTTGACCGACCAAGTTTTCCTATACATTGGGATGTATGCTGAGCAGCTTGAAATGCTTTCTATTGCTTTTGCTGGGGACAGCGACAAAGGTATGCTTTATGTGTTGAACGGATGCAAGAAGCTGAGGAAGCTTGAGATTAGGGACAGCCCCTTTGGTGACGGGGCACTTCTGAAGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTTACCCTTGGAGGCTGCAAGACTCTTGCAATGAACATGCCGGGCCTTAATGTGGAGATCATAAATGAAAATGATCAGATGGAATTCATTATTGATGATGAGCAAAAGGTGGAGAAGATGTACGTCTACCGCACATTAGTAGGGCCGAGGGAGGATAAGCCAGAGTTTGTGTGGACTCTGTAG

Protein Analysis

572

Amino Acids

63.92

Weight (kDa)

6.72

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 41 1.2e-17 F-box
F-box-like PF12937 5 - 35 2.9e-06 F-box-like
Transp_inhibit PF18791 61 - 107 6e-23 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12820 AT3G26810
fragaria_vesca FvH4_6g54140
malus_domestica MD09G1005000.v1.1 MD17G1009000.v1.1
prunus_persica Prupe.3G311800_v2.0.a1
pyrus_communis pycom111g00370
rosa_chinensis RchiOBHm_Chr2g0176311
rosa_laevigata RLG00000022402
rosa_multiflora Rmu_sc0000405.1_g000027
rosa_roxburghii Rroxscaffold_2G00076580
rosa_rugosa Rorug02G0593100
rosa_samantha Rh2CG645600 Rh2DG696400
rosa_wichuraiana Rw2G055070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
AccB1I GGYRCC 1 cut(s) 707
AccI GTMKAC 1 cut(s) 1662
AciI CCGC 4 cut(s) 58, 1056, 1291, 1666
AclWI GGATC 5 cut(s) 477, 722, 1028, 1202, 1506
AcsI RAATTY 2 cut(s) 376, 1619
AcuI CTGAAG 3 cut(s) 776, 920, 1502
AfaI GTAC 2 cut(s) 535, 1658
AfiI CCNNNNNNNGG 3 cut(s) 19, 450, 1588
AgsI TTSAA 6 cut(s) 205, 232, 278, 868, 1361, 1417
AjiI CACGTC 1 cut(s) 1489
AjnI CCWGG 3 cut(s) 282, 362, 883
AjuI GAANNNNNNNTTGG 4 cut(s) 1093, 1125, 1527, 1559
Alw21I GWGCWC 2 cut(s) 33, 315
Alw26I GTCTC 3 cut(s) 340, 592, 960
AlwI GGATC 5 cut(s) 477, 722, 1028, 1202, 1506
AoxI GGCC 7 cut(s) 184, 424, 502, 1072, 1306, 1579, 1679
ApoI RAATTY 2 cut(s) 376, 1619
ArsI GACNNNNNNTTYG 2 cut(s) 1445, 1477
AseI ATTAAT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 6 cut(s) 61, 184, 238, 366, 1579, 1679
AsuC2I CCSGG 3 cut(s) 183, 712, 1578
AsuHPI GGTGA 1 cut(s) 1478
AvaII GGWCC 3 cut(s) 61, 238, 366
AxyI CCTNAGG 1 cut(s) 632
BaeGI GKGCMC 2 cut(s) 710, 1477
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 33, 315
BbvCI CCTCAGC 1 cut(s) 1433
BccI CCATC 2 cut(s) 416, 1609
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 3 cut(s) 284, 364, 885
BciVI GTATCC 2 cut(s) 556, 942
BclI TGATCA 2 cut(s) 493, 1609
BcnI CCSGG 3 cut(s) 183, 712, 1578
BcoDI GTCTC 3 cut(s) 340, 592, 960
BfaI CTAG 5 cut(s) 584, 609, 725, 977, 1244
BfmI CTRYAG 4 cut(s) 435, 473, 745, 1715
BfuI GTATCC 2 cut(s) 556, 942
BglI GCCNNNNNGGC 1 cut(s) 300
BglII AGATCT 1 cut(s) 611
BlpI GCTNAGC 2 cut(s) 512, 1350
Bme1390I CCNGG 6 cut(s) 183, 284, 364, 712, 885, 1578
Bme18I GGWCC 3 cut(s) 61, 238, 366
BmgBI CACGTC 1 cut(s) 1489
BmgT120I GGNCC 6 cut(s) 61, 184, 238, 366, 1579, 1679
BmiI GGNNCC 4 cut(s) 62, 240, 259, 709
BmrFI CCNGG 6 cut(s) 183, 284, 364, 712, 885, 1578
BmsI GCATC 4 cut(s) 669, 998, 1209, 1412
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 4 cut(s) 314, 872, 1286, 1433
Bpu1102I GCTNAGC 2 cut(s) 512, 1350
BpuEI CTTGAG 3 cut(s) 173, 305, 1463
BpuMI CCSGG 3 cut(s) 183, 712, 1578
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 4 cut(s) 269, 282, 1543, 1682
BsaXI ACNNNNNCTCC 4 cut(s) 246, 276, 1640, 1670
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 450, 1588
Bse1I ACTGG 2 cut(s) 922, 957
Bse21I CCTNAGG 1 cut(s) 632
Bse3DI GCAATG 2 cut(s) 1112, 1572
BseBI CCWGG 3 cut(s) 284, 364, 885
BseDI CCNNGG 4 cut(s) 269, 282, 1543, 1682
BseGI GGATG 5 cut(s) 860, 1200, 1347, 1427, 1527
BseLI CCNNNNNNNGG 3 cut(s) 19, 450, 1588
BseMI GCAATG 2 cut(s) 1112, 1572
BseMII CTCAG 5 cut(s) 279, 328, 623, 1341, 1424
BseNI ACTGG 2 cut(s) 922, 957
BseRI GAGGAG 2 cut(s) 323, 807
BseSI GKGCMC 2 cut(s) 710, 1477
BseYI CCCAGC 3 cut(s) 249, 829, 1382
BshFI GGCC 7 cut(s) 186, 426, 504, 1074, 1308, 1581, 1681
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 33, 315
BsiSI CCGG 3 cut(s) 182, 711, 1577
BslFI GGGAC 6 cut(s) 74, 178, 224, 635, 1400, 1466
BslI CCNNNNNNNGG 3 cut(s) 19, 450, 1588
BsmAI GTCTC 3 cut(s) 340, 592, 960
BsmFI GGGAC 6 cut(s) 74, 178, 224, 635, 1400, 1466
BsnI GGCC 7 cut(s) 186, 426, 504, 1074, 1308, 1581, 1681
Bso31I GGTCTC 1 cut(s) 340
Bsp1286I GDGCHC 4 cut(s) 33, 315, 710, 1477
Bsp1720I GCTNAGC 2 cut(s) 512, 1350
BspACI CCGC 4 cut(s) 58, 1056, 1291, 1666
BspANI GGCC 7 cut(s) 186, 426, 504, 1074, 1308, 1581, 1681
BspCNI CTCAG 5 cut(s) 280, 327, 624, 1342, 1425
BspLI GGNNCC 4 cut(s) 62, 240, 259, 709
BspMAI CTGCAG 1 cut(s) 477
BspPI GGATC 5 cut(s) 477, 722, 1028, 1202, 1506
BspT107I GGYRCC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 2 cut(s) 1112, 1572
BsrI ACTGG 2 cut(s) 922, 957
BssECI CCNNGG 4 cut(s) 269, 282, 1543, 1682
BssT1I CCWWGG 2 cut(s) 269, 1543
Bst2UI CCWGG 3 cut(s) 284, 364, 885
Bst4CI ACNGT 3 cut(s) 644, 1159, 1188
BstC8I GCNNGC 7 cut(s) 175, 562, 684, 1053, 1093, 1130, 1276
BstDEI CTNAG 9 cut(s) 288, 314, 458, 512, 632, 872, 1286, 1350, 1433
BstF5I GGATG 5 cut(s) 860, 1200, 1347, 1427, 1527
BstMAI GTCTC 3 cut(s) 340, 592, 960
BstNI CCWGG 3 cut(s) 284, 364, 885
BstNSI RCATGY 3 cut(s) 564, 1055, 1576
BstSCI CCNGG 6 cut(s) 181, 282, 362, 710, 883, 1576
BstSFI CTRYAG 4 cut(s) 435, 473, 745, 1715
BstSLI GKGCMC 2 cut(s) 710, 1477
BstX2I RGATCY 3 cut(s) 469, 611, 727
BstYI RGATCY 3 cut(s) 469, 611, 727
Bsu36I CCTNAGG 1 cut(s) 632
BsuI GTATCC 2 cut(s) 556, 942
BsuRI GGCC 7 cut(s) 186, 426, 504, 1074, 1308, 1581, 1681
BtrI CACGTC 1 cut(s) 1489
BtsCI GGATG 5 cut(s) 860, 1200, 1347, 1427, 1527
BtsIMutI CAGTG 1 cut(s) 929
Cac8I GCNNGC 7 cut(s) 175, 562, 684, 1053, 1093, 1130, 1276
Cfr13I GGNCC 6 cut(s) 61, 184, 238, 366, 1579, 1679
Csp6I GTAC 2 cut(s) 534, 1657
CviAII CATG 6 cut(s) 93, 245, 561, 893, 1052, 1573
CviQI GTAC 2 cut(s) 534, 1657
DdeI CTNAG 9 cut(s) 288, 314, 458, 512, 632, 872, 1286, 1350, 1433
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 269, 1543
Eco147I AGGCCT 1 cut(s) 1074
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 61, 238, 366
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 776, 920, 1502
Eco81I CCTNAGG 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 366
EcoRI GAATTC 1 cut(s) 1619
EcoRII CCWGG 3 cut(s) 282, 362, 883
EcoT14I CCWWGG 2 cut(s) 269, 1543
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 269, 1543
FaeI CATG 6 cut(s) 96, 248, 564, 896, 1055, 1576
FalI AAGNNNNNCTT 8 cut(s) 203, 235, 1059, 1091, 1389, 1421, 1527, 1559
FaqI GGGAC 6 cut(s) 74, 178, 224, 635, 1400, 1466
FatI CATG 6 cut(s) 92, 244, 560, 892, 1051, 1572
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 2 cut(s) 493, 1609
FblI GTMKAC 1 cut(s) 1662
FokI GGATG 5 cut(s) 847, 1187, 1354, 1434, 1534
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 5 cut(s) 584, 609, 725, 977, 1244
GsaI CCCAGC 3 cut(s) 253, 833, 1386
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 7 cut(s) 186, 426, 504, 1074, 1308, 1581, 1681
HapII CCGG 3 cut(s) 182, 711, 1577
Hin1II CATG 6 cut(s) 96, 248, 564, 896, 1055, 1576
HincII GTYRAC 2 cut(s) 265, 640
HindII GTYRAC 2 cut(s) 265, 640
HindIII AAGCTT 3 cut(s) 1103, 1283, 1439
HinfI GANTC 4 cut(s) 734, 740, 1558, 1711
HpaI GTTAAC 1 cut(s) 640
HpaII CCGG 3 cut(s) 182, 711, 1577
HphI GGTGA 1 cut(s) 1478
Hpy166II GTNNAC 4 cut(s) 265, 640, 1663, 1710
Hpy188I TCNGA 9 cut(s) 160, 340, 375, 618, 739, 965, 1033, 1482, 1614
Hpy188III TCNNGA 7 cut(s) 46, 322, 524, 631, 656, 731, 787
Hpy8I GTNNAC 4 cut(s) 265, 640, 1663, 1710
HpyAV CCTTC 6 cut(s) 199, 401, 751, 1064, 1244, 1477
HpyCH4III ACNGT 3 cut(s) 644, 1159, 1188
HpyCH4IV ACGT 2 cut(s) 1488, 1659
HpyCH4V TGCA 9 cut(s) 475, 682, 1009, 1200, 1237, 1278, 1425, 1554, 1565
HpyF3I CTNAG 9 cut(s) 288, 314, 458, 512, 632, 872, 1286, 1350, 1433
HpySE526I ACGT 2 cut(s) 1488, 1659
Hsp92II CATG 6 cut(s) 96, 248, 564, 896, 1055, 1576
Ksp22I TGATCA 2 cut(s) 493, 1609
KspAI GTTAAC 1 cut(s) 640
LmnI GCTCC 5 cut(s) 263, 310, 463, 820, 886
LweI GCATC 4 cut(s) 669, 998, 1209, 1412
MaeI CTAG 5 cut(s) 584, 609, 725, 977, 1244
MaeII ACGT 2 cut(s) 1488, 1659
MaeIII GTNAC 6 cut(s) 46, 1060, 1228, 1296, 1466, 1537
MboII GAAGA 3 cut(s) 28, 1079, 1663
MfeI CAATTG 2 cut(s) 445, 1263
MflI RGATCY 3 cut(s) 469, 611, 727
MhlI GDGCHC 4 cut(s) 33, 315, 710, 1477
MlyI GAGTC 3 cut(s) 728, 1552, 1705
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 7 cut(s) 381, 552, 579, 639, 771, 914, 1584
MslI CAYNNNNRTG 2 cut(s) 897, 1340
MspA1I CMGCKG 2 cut(s) 58, 1058
MspI CCGG 3 cut(s) 182, 711, 1577
MspR9I CCNGG 6 cut(s) 183, 284, 364, 712, 885, 1578
MunI CAATTG 2 cut(s) 445, 1263
MvaI CCWGG 3 cut(s) 284, 364, 885
NciI CCSGG 3 cut(s) 183, 712, 1578
NlaIII CATG 6 cut(s) 96, 248, 564, 896, 1055, 1576
NlaIV GGNNCC 4 cut(s) 62, 240, 259, 709
NmeAIII GCCGAG 1 cut(s) 1707
NmuCI GTSAC 4 cut(s) 46, 1228, 1296, 1466
NspI RCATGY 3 cut(s) 564, 1055, 1576
PaeI GCATGC 2 cut(s) 564, 1055
PceI AGGCCT 1 cut(s) 1074
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 740
PflFI GACNNNGTC 1 cut(s) 1226
PfoI TCCNGGA 1 cut(s) 883
PleI GAGTC 3 cut(s) 728, 1552, 1705
PpsI GAGTC 3 cut(s) 728, 1552, 1705
PpuMI RGGWCCY 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 579
PsiI TTATAA 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 282, 362, 883
PspFI CCCAGC 3 cut(s) 249, 829, 1382
PspGI CCWGG 3 cut(s) 282, 362, 883
PspN4I GGNNCC 4 cut(s) 62, 240, 259, 709
PspPI GGNCC 6 cut(s) 61, 184, 238, 366, 1579, 1679
PspPPI RGGWCCY 1 cut(s) 366
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
PstI CTGCAG 1 cut(s) 477
PsuI RGATCY 3 cut(s) 469, 611, 727
PsyI GACNNNGTC 1 cut(s) 1226
RsaI GTAC 2 cut(s) 535, 1658
RsaNI GTAC 2 cut(s) 534, 1657
RseI CAYNNNNRTG 2 cut(s) 897, 1340
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 7 cut(s) 381, 552, 579, 639, 771, 914, 1584
Sau96I GGNCC 6 cut(s) 61, 184, 238, 366, 1579, 1679
SchI GAGTC 3 cut(s) 728, 1552, 1705
ScrFI CCNGG 6 cut(s) 183, 284, 364, 712, 885, 1578
SduI GDGCHC 4 cut(s) 33, 315, 710, 1477
SfaNI GCATC 4 cut(s) 669, 998, 1209, 1412
SfcI CTRYAG 4 cut(s) 435, 473, 745, 1715
SinI GGWCC 3 cut(s) 61, 238, 366
SmiMI CAYNNNNRTG 2 cut(s) 897, 1340
SmlI CTYRAG 3 cut(s) 188, 320, 1442
SmoI CTYRAG 3 cut(s) 188, 320, 1442
SphI GCATGC 2 cut(s) 564, 1055
SseBI AGGCCT 1 cut(s) 1074
SsiI CCGC 4 cut(s) 58, 1056, 1291, 1666
SspMI CTAG 5 cut(s) 584, 609, 725, 977, 1244
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 1074
StyD4I CCNGG 6 cut(s) 181, 282, 362, 710, 883, 1576
StyI CCWWGG 2 cut(s) 269, 1543
TaaI ACNGT 3 cut(s) 644, 1159, 1188
TaiI ACGT 2 cut(s) 1491, 1662
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 2 cut(s) 78, 1331
TauI GCSGC 1 cut(s) 1058
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 7 cut(s) 381, 552, 579, 639, 771, 914, 1584
Tru9I TTAA 7 cut(s) 381, 552, 579, 639, 771, 914, 1584
TscAI CASTG 1 cut(s) 929
TseFI GTSAC 4 cut(s) 46, 1228, 1296, 1466
Tsp45I GTSAC 4 cut(s) 46, 1228, 1296, 1466
TspGWI ACGGA 2 cut(s) 250, 1434
TspRI CASTG 1 cut(s) 929
Tth111I GACNNNGTC 1 cut(s) 1226
VpaK11BI GGWCC 3 cut(s) 61, 238, 366
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 2 cut(s) 376, 1619
XceI RCATGY 3 cut(s) 564, 1055, 1576
XcmI CCANNNNNNNNNTGG 1 cut(s) 1704
XmiI GTMKAC 1 cut(s) 1662
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 5 cut(s) 584, 609, 725, 977, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.