AT3G44220

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0023602
Physical Location & Seq
Forward (+)
15927939 .. 15929839
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44220.1

Sequence Viewer

Length: 621 bp
ATGACTGAGAAGGAATGTGAACATCACCACGACGAAGATGAGAAGATGAGGAAACGTATAGGAGCATTGGTGCTTGGGTTTCTCGCAGCTGTTCTTTTCGTGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCACGTTTTGTTCTTCAAGACGCAACCATTTACGCGTTCAACGTTTCTCAGCCTAATTATCTCACTTCTAATCTTCAGGTCACTCTTTCTTCACGAAATCCTAATGACAAGATCGGAATCTTCTATGACCGCCTTGACATCTACGCATCTTACCGCAACCAACAGGTGACGTTGGCGACGTTATTGCCGGCGACTTACCAAGGCCACCTTGATGTGACAATATGGTCGCCGTTTCTGTATGGAACAACTGTACCGGTGGCACCATATTTTTCTCCGGCGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATCAAGATCGATGGTTGGGTTAGATGGAAAGTGGGAACGTGGGTCTCCGGTAGGTACCGCCTCCACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCTGGTGATGGTCCAGCCGTGAAGTACCAGCTTGTCCAACGATGTGCCGTTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

206

Amino Acids

23.25

Weight (kDa)

7.77

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 74 - 177 7.4e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44220 AT5G22200
prunus_persica Prupe.6G141400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 510
AccB1I GGYRCC 2 cut(s) 397, 510
AccII CGCG 1 cut(s) 173
AciI CCGC 4 cut(s) 268, 292, 437, 514
AclI AACGTT 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 3 cut(s) 390, 512, 587
AflIII ACRYGT 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 391
AgsI TTSAA 2 cut(s) 155, 178
AjiI CACGTC 1 cut(s) 523
AluBI AGCT 3 cut(s) 89, 536, 592
AluI AGCT 3 cut(s) 89, 536, 592
Alw26I GTCTC 1 cut(s) 505
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 391
Asp718I GGTACC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 137, 572
AsuHPI GGTGA 4 cut(s) 17, 119, 316, 578
AvaII GGWCC 2 cut(s) 137, 572
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BanI GGYRCC 2 cut(s) 397, 510
BbvI GCAGC 1 cut(s) 98
BccI CCATC 4 cut(s) 436, 461, 474, 563
BceAI ACGGC 4 cut(s) 352, 450, 563, 593
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BcoDI GTCTC 1 cut(s) 505
BglII AGATCT 1 cut(s) 427
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 137, 572
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 137, 572
BmiI GGNNCC 2 cut(s) 399, 512
BmsI GCATC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 547
Bsa29I ATCGAT 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 2 cut(s) 391, 503
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse118I RCCGGY 2 cut(s) 325, 391
Bse8I GATNNNNATC 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 447
BseJI GATNNNNATC 1 cut(s) 254
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 2 cut(s) 397, 510
BshTI ACCGGT 1 cut(s) 391
BshVI ATCGAT 1 cut(s) 465
BsiSI CCGG 5 cut(s) 326, 392, 413, 504, 552
BsmAI GTCTC 1 cut(s) 505
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 249, 427, 462
BspACI CCGC 4 cut(s) 268, 292, 437, 514
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 465
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 399, 512
BspT107I GGYRCC 2 cut(s) 397, 510
BspTNI GGTCTC 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 325, 391
BssAI RCCGGY 2 cut(s) 325, 391
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 249, 427, 462
BssT1I CCWWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 6, 186, 547
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 3 cut(s) 252, 430, 465
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 3 cut(s) 249, 427, 462
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 465
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 1 cut(s) 327
Cfr10I RCCGGY 2 cut(s) 325, 391
Cfr13I GGNCC 2 cut(s) 137, 572
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 389, 511, 586
CspAI ACCGGT 1 cut(s) 391
CspCI CAANNNNNGTGG 2 cut(s) 509, 544
CviJI RGCY 8 cut(s) 89, 190, 342, 423, 536, 551, 578, 592
CviKI_1 RGCY 8 cut(s) 89, 190, 342, 423, 536, 551, 578, 592
CviQI GTAC 3 cut(s) 389, 511, 586
DdeI CTNAG 3 cut(s) 6, 186, 547
DpnI GATC 3 cut(s) 251, 429, 464
DpnII GATC 3 cut(s) 249, 427, 462
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 137, 572
Eco57I CTGAAG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaiI YATR 5 cut(s) 59, 264, 361, 378, 403
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 342
HapII CCGG 5 cut(s) 326, 392, 413, 504, 552
HgaI GACGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 255
HpaII CCGG 5 cut(s) 326, 392, 413, 504, 552
HphI GGTGA 4 cut(s) 17, 119, 316, 578
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 254, 453
Hpy188III TCNNGA 3 cut(s) 155, 231, 460
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 35, 319
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 7 cut(s) 55, 142, 180, 308, 317, 494, 522
HpyF3I CTNAG 3 cut(s) 6, 186, 547
HpySE526I ACGT 7 cut(s) 55, 142, 180, 308, 317, 494, 522
KpnI GGTACC 1 cut(s) 514
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Kzo9I GATC 3 cut(s) 249, 427, 462
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 293
MaeII ACGT 7 cut(s) 55, 142, 180, 308, 317, 494, 522
MaeIII GTNAC 3 cut(s) 217, 304, 352
MalI GATC 3 cut(s) 251, 429, 464
MboI GATC 3 cut(s) 249, 427, 462
MboII GAAGA 6 cut(s) 47, 55, 143, 203, 219, 250
MfeI CAATTG 1 cut(s) 526
MflI RGATCY 1 cut(s) 427
MluCI AATT 2 cut(s) 193, 526
MluI ACGCGT 1 cut(s) 171
MnlI CCTC 2 cut(s) 42, 527
MroNI GCCGGC 1 cut(s) 325
MseI TTAA 2 cut(s) 419, 619
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 326, 392, 413, 504, 552
MunI CAATTG 1 cut(s) 526
MvnI CGCG 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 327
NdeII GATC 3 cut(s) 249, 427, 462
NgoMIV GCCGGC 1 cut(s) 325
NlaIV GGNNCC 2 cut(s) 399, 512
NmuCI GTSAC 3 cut(s) 217, 304, 352
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 314
PdiI GCCGGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 255
PinAI ACCGGT 1 cut(s) 391
PkrI GCNGC 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 399, 512
PspPI GGNCC 2 cut(s) 137, 572
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 3 cut(s) 390, 512, 587
RsaNI GTAC 3 cut(s) 389, 511, 586
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 419, 619
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 3 cut(s) 249, 427, 462
Sau96I GGNCC 2 cut(s) 137, 572
SfaNI GCATC 1 cut(s) 293
SinI GGWCC 2 cut(s) 137, 572
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 2 cut(s) 193, 526
SsiI CCGC 4 cut(s) 268, 292, 437, 514
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 7 cut(s) 58, 145, 183, 311, 320, 497, 525
TaqI TCGA 1 cut(s) 465
TasI AATT 2 cut(s) 193, 526
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 419, 619
Tru9I TTAA 2 cut(s) 419, 619
TseFI GTSAC 3 cut(s) 217, 304, 352
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 3 cut(s) 217, 304, 352
TspGWI ACGGA 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 137, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.