Prupe.6G141400_v2.0.a1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0023602
Physical Location & Seq
Reverse (-)
11443820 .. 11444455
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G141400.1

Sequence Viewer

Length: 636 bp
ATGAGTGAAAAGATAGCCAGCGTCAACGTCGGCTGCATTAGCAGCAGGAAACTAAAGTGGTTCGCATGGGGCACCGGTGGCCTTATTGTCTTTATTGGCCTCCTAGTGTTTGTTGTGTTCCTCGTTCTCCACCCCTCCAAGCCAAGCTTCAACCTCGAAGACGTCACCGTTTATCAGTTCAACGTCTCCAAGGCACCGCCCTACGCCATCACCATCATCATGCAGGTCACACTGTCCTCTAGAAACCCTAATTCTCGGATAGGCGTAGATTACCAGCCTCTCCACGTCTACGCCACATATCGAGACCAGCAGATAACAATGGCTTATCTCTTGCCTCCTACGTACCAAGGGCACAAGGAACCTGTGGTGTGGTCACCTCCTTTGACTGGCTACGACATGCCGATTTCTCCATATTCACAGCAGTCTTTGGATCAAGATTGGCATACTGGGGTTGTCCTGATGAATATCAAGCTTCAAGGGGACGTGAAGTGGAAAGTAGGGACTTGGATTTCGCCCAAGTATCACTTGTACGTGCATTGCCCGGCGAATATCAGGTTGGGGGATTTGAACAACGGTGGTCCAAACCTCATCAAGGGTCAGCCGGTGGATAATTGCGATGTGGAGATTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

212

Amino Acids

23.63

Weight (kDa)

8.37

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44220 AT5G22200
prunus_persica Prupe.6G141400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 214
AccB1I GGYRCC 2 cut(s) 71, 193
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 344, 530
AfiI CCNNNNNNNGG 2 cut(s) 386, 592
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 151, 181, 476, 568
AjiI CACGTC 2 cut(s) 286, 484
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 539, 571
AluBI AGCT 2 cut(s) 147, 472
AluI AGCT 2 cut(s) 147, 472
Alw26I GTCTC 2 cut(s) 190, 297
AlwI GGATC 1 cut(s) 438
AoxI GGCC 2 cut(s) 79, 97
ApeKI GCWGC 2 cut(s) 33, 42
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AsiGI ACCGGT 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 157, 202, 366
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 2 cut(s) 74, 354
BanI GGYRCC 2 cut(s) 71, 193
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 20, 54
BccI CCATC 2 cut(s) 215, 221
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 190, 297
BfaI CTAG 2 cut(s) 104, 240
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 2 cut(s) 34, 43
BlsI GCNGC 2 cut(s) 35, 44
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 578
BmgBI CACGTC 2 cut(s) 286, 484
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 3 cut(s) 73, 195, 360
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 542
BsaAI YACGTR 2 cut(s) 342, 532
BsaBI GATNNNNATC 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 189, 346
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 592
Bse118I RCCGGY 2 cut(s) 74, 601
Bse1I ACTGG 2 cut(s) 391, 451
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 189, 346
BseJI GATNNNNATC 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 386, 592
BseMI GCAATG 1 cut(s) 535
BseNI ACTGG 2 cut(s) 391, 451
BseSI GKGCMC 2 cut(s) 74, 354
BseXI GCAGC 2 cut(s) 20, 54
BshFI GGCC 2 cut(s) 81, 99
BshNI GGYRCC 2 cut(s) 71, 193
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 3 cut(s) 75, 542, 602
BslFI GGGAC 2 cut(s) 494, 514
BslI CCNNNNNNNGG 2 cut(s) 386, 592
BsmAI GTCTC 2 cut(s) 190, 297
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 494, 514
BsnI GGCC 2 cut(s) 81, 99
Bso31I GGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 74, 354
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 81, 99
BspLI GGNNCC 3 cut(s) 73, 195, 360
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 2 cut(s) 71, 193
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 2 cut(s) 74, 601
BsrI ACTGG 2 cut(s) 391, 451
BssAI RCCGGY 2 cut(s) 74, 601
BssECI CCNNGG 2 cut(s) 189, 346
BssMI GATC 1 cut(s) 430
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 189, 346
Bst4CI ACNGT 3 cut(s) 169, 234, 575
BstACI GRCGYC 1 cut(s) 162
BstBAI YACGTR 2 cut(s) 342, 532
BstC8I GCNNGC 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 590
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 190, 297
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 3 cut(s) 39, 42, 78
BstNSI RCATGY 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 540
BstSLI GKGCMC 2 cut(s) 74, 354
BstSNI TACGTA 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 20, 54
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 81, 99
BtgZI GCGATG 1 cut(s) 630
BtrI CACGTC 2 cut(s) 286, 484
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 2 cut(s) 74, 601
Cfr13I GGNCC 1 cut(s) 578
CseI GACGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 343, 529
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 3 cut(s) 66, 220, 397
CviQI GTAC 2 cut(s) 343, 529
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eco105I TACGTA 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 189, 346
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 578
Eco91I GGTNACC 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 189, 346
ErhI CCWWGG 2 cut(s) 189, 346
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 3 cut(s) 69, 223, 400
FaiI YATR 6 cut(s) 67, 221, 298, 398, 412, 444
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 509, 541
FaqI GGGAC 2 cut(s) 494, 514
FatI CATG 3 cut(s) 65, 219, 396
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 34, 43
Fsp4HI GCNGC 2 cut(s) 34, 43
FspBI CTAG 2 cut(s) 104, 240
GluI GCNGC 2 cut(s) 34, 43
HaeIII GGCC 2 cut(s) 81, 99
HapII CCGG 3 cut(s) 75, 542, 602
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 69, 223, 400
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 2 cut(s) 145, 470
HpaII CCGG 3 cut(s) 75, 542, 602
HphI GGTGA 3 cut(s) 157, 202, 366
Hpy166II GTNNAC 2 cut(s) 25, 289
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 4 cut(s) 240, 302, 434, 457
Hpy8I GTNNAC 2 cut(s) 25, 289
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 169, 234, 575
HpyCH4IV ACGT 7 cut(s) 27, 162, 183, 285, 341, 483, 531
HpyCH4V TGCA 3 cut(s) 36, 223, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 42, 78
HpySE526I ACGT 7 cut(s) 27, 162, 183, 285, 341, 483, 531
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 69, 223, 400
Kzo9I GATC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 20, 54
MaeI CTAG 2 cut(s) 104, 240
MaeII ACGT 7 cut(s) 27, 162, 183, 285, 341, 483, 531
MaeIII GTNAC 3 cut(s) 163, 226, 372
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 74, 354
MluCI AATT 2 cut(s) 250, 610
MnlI CCTC 9 cut(s) 110, 131, 145, 164, 247, 288, 345, 387, 596
MseI TTAA 1 cut(s) 634
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 3 cut(s) 75, 542, 602
MspR9I CCNGG 1 cut(s) 542
MwoI GCNNNNNNNGC 3 cut(s) 39, 42, 78
NciI CCSGG 1 cut(s) 542
NdeII GATC 1 cut(s) 430
NlaIII CATG 3 cut(s) 69, 223, 400
NlaIV GGNNCC 3 cut(s) 73, 195, 360
NmuCI GTSAC 3 cut(s) 163, 226, 372
NspI RCATGY 1 cut(s) 400
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 2 cut(s) 35, 44
Ppu21I YACGTR 2 cut(s) 342, 532
PspEI GGTNACC 1 cut(s) 372
PspN4I GGNNCC 3 cut(s) 73, 195, 360
PspPI GGNCC 1 cut(s) 578
RsaI GTAC 2 cut(s) 344, 530
RsaNI GTAC 2 cut(s) 343, 529
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 2 cut(s) 34, 43
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 2 cut(s) 74, 354
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 218
SnaBI TACGTA 1 cut(s) 342
Sse9I AATT 2 cut(s) 250, 610
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 104, 240
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 189, 346
TaaI ACNGT 3 cut(s) 169, 234, 575
TaiI ACGT 7 cut(s) 30, 165, 186, 288, 344, 486, 534
TaqI TCGA 2 cut(s) 156, 301
TasI AATT 2 cut(s) 250, 610
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 3 cut(s) 163, 226, 372
TseI GCWGC 2 cut(s) 33, 42
Tsp45I GTSAC 3 cut(s) 163, 226, 372
TspDTI ATGAA 1 cut(s) 476
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 578
XagI CCTNNNNNAGG 1 cut(s) 590
XbaI TCTAGA 1 cut(s) 239
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 104, 240
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.