AT3G45920

leucine-rich repeat protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16882182 .. 16883011
830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45920.1

Sequence Viewer

Length: 579 bp
ATGGTGCATAGAGATGTCAAAAGTATAAATATATTATTGGATGAAGAGTTCAAGGCCAAAATTTCGGATTTTGGACTCTCTAGATCGTTTCAAGTTGGAGGCGATCAACCTCAAGTTTCAACAGTTGTTGTTGGTACTCTAGGATACCTTGATCCCGAATATTACTTAACAAGTGAGTTATCCGAGAAGAGTGATGTCTACAGTTTCGGGATCTTGTTACTAGAGATTATCACAAACCAACGAGTGATTGATCAAACCCGTGAAAACCCTAACATAGCAGAATGGGTTACATTTGTGATCAAGAAAGGAGATACTAGTCAAATTGTGGATCCTAAACTTCACGGAAACTATGACACCCACTCTGTCTGGAGAGCTCTTGAAGTAGCAATGTCATGCGCAAATCCTTCTTCAGTCAAACGACCAAACATGTCTCAAGTAATCATCAATCTTAAAGAGTGTCTTGCATCTGAAAACACGAGGATAAGTAGGAATAATCAAAACATGGACTCTGGTCATAGCTCGGATCAGCTTAATGTGACTGTGACCTTTGATACTGATGTGAAGCCTAAGGCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

5.37

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 147 1.1e-18 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 146 1.7e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023657)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45920 AT3G46355 AT3G46410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 397
AccI GTMKAC 1 cut(s) 198
AclWI GGATC 5 cut(s) 146, 218, 323, 336, 531
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 4 cut(s) 52, 92, 120, 380
AhlI ACTAGT 1 cut(s) 314
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 3 cut(s) 374, 519, 529
AluI AGCT 3 cut(s) 374, 519, 529
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 5 cut(s) 146, 218, 323, 336, 531
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 60
AspLEI GCGC 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BamHI GGATCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 376
BciVI GTATCC 1 cut(s) 137
BclI TGATCA 2 cut(s) 250, 297
BcoDI GTCTC 1 cut(s) 435
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 4 cut(s) 81, 140, 221, 315
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 473
BoxI GACNNNNGTC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 388
BpuEI CTTGAG 2 cut(s) 96, 417
Bse21I CCTNAGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 393
BseGI GGATG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 393
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 435
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 5 cut(s) 146, 218, 323, 336, 531
BsrDI GCAATG 1 cut(s) 393
BssMI GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
BssSI CACGAG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 475
Bst4CI ACNGT 3 cut(s) 124, 203, 541
Bst6I CTCTTC 2 cut(s) 39, 182
BstDEI CTNAG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 8 cut(s) 86, 106, 154, 213, 253, 300, 331, 526
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
BstNSI RCATGY 1 cut(s) 430
BstPAI GACNNNNGTC 1 cut(s) 510
BstSFI CTRYAG 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 210, 328
BstYI RGATCY 2 cut(s) 210, 328
Bsu36I CCTNAGG 1 cut(s) 567
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 46
CfoI GCGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 393, 427, 502
CviJI RGCY 5 cut(s) 56, 374, 519, 529, 565
CviKI_1 RGCY 5 cut(s) 56, 374, 519, 529, 565
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 567
DpnI GATC 8 cut(s) 85, 105, 153, 212, 252, 299, 330, 525
DpnII GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
Eam1104I CTCTTC 2 cut(s) 39, 182
EarI CTCTTC 2 cut(s) 39, 182
Ecl136II GAGCTC 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 1 cut(s) 567
EcoICRI GAGCTC 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 376
FaeI CATG 3 cut(s) 396, 430, 505
FaiI YATR 9 cut(s) 9, 26, 32, 275, 351, 394, 428, 503, 516
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 3 cut(s) 392, 426, 501
FbaI TGATCA 2 cut(s) 250, 297
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 376
FspBI CTAG 4 cut(s) 81, 140, 221, 315
FspI TGCGCA 1 cut(s) 397
GlaI GCGC 1 cut(s) 397
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 1 cut(s) 56
HhaI GCGC 1 cut(s) 398
Hin1II CATG 3 cut(s) 396, 430, 505
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 2 cut(s) 75, 506
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 67, 184, 469, 523
Hpy188III TCNNGA 6 cut(s) 81, 155, 208, 301, 367, 377
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 124, 203, 541
HpyCH4V TGCA 2 cut(s) 7, 464
HpyF3I CTNAG 1 cut(s) 567
Hsp92II CATG 3 cut(s) 396, 430, 505
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 2 cut(s) 250, 297
Kzo9I GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
LpnPI CCDG 2 cut(s) 352, 495
LweI GCATC 1 cut(s) 473
MaeI CTAG 4 cut(s) 81, 140, 221, 315
MaeIII GTNAC 4 cut(s) 216, 286, 535, 541
MalI GATC 8 cut(s) 85, 105, 153, 212, 252, 299, 330, 525
MboI GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
MboII GAAGA 3 cut(s) 56, 199, 399
MflI RGATCY 2 cut(s) 210, 328
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 2 cut(s) 60, 321
MlyI GAGTC 2 cut(s) 69, 500
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 92, 120, 471
MseI TTAA 3 cut(s) 167, 450, 531
MslI CAYNNNNRTG 1 cut(s) 12
NdeII GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
NlaIII CATG 3 cut(s) 396, 430, 505
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 535, 541
NsbI TGCGCA 1 cut(s) 397
NspI RCATGY 1 cut(s) 430
PciI ACATGT 1 cut(s) 426
PleI GAGTC 2 cut(s) 69, 500
PpsI GAGTC 2 cut(s) 69, 500
PscI ACATGT 1 cut(s) 426
PshAI GACNNNNGTC 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 330
PsuI RGATCY 2 cut(s) 210, 328
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 3 cut(s) 167, 450, 531
Sau3AI GATC 8 cut(s) 83, 103, 151, 210, 250, 297, 328, 523
SchI GAGTC 2 cut(s) 69, 500
SduI GDGCHC 1 cut(s) 376
SetI ASST 6 cut(s) 112, 150, 376, 521, 531, 548
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 111, 432
SmoI CTYRAG 2 cut(s) 111, 432
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 2 cut(s) 60, 321
SspI AATATT 1 cut(s) 161
SspMI CTAG 4 cut(s) 81, 140, 221, 315
SstI GAGCTC 1 cut(s) 376
TaaI ACNGT 3 cut(s) 124, 203, 541
TasI AATT 2 cut(s) 60, 321
Tru1I TTAA 3 cut(s) 167, 450, 531
Tru9I TTAA 3 cut(s) 167, 450, 531
TseFI GTSAC 2 cut(s) 535, 541
Tsp45I GTSAC 2 cut(s) 535, 541
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 357
XapI RAATTY 1 cut(s) 60
XbaI TCTAGA 1 cut(s) 80
XceI RCATGY 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 4 cut(s) 81, 140, 221, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.