AT3G46410

leucine-rich repeat protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17079093 .. 17080684
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46410.1

Sequence Viewer

Length: 876 bp
ATGACAAGTAACTTTCAAAGAGCTCTTGGTGAAGGAGGCTTTGGCATTGTCTATCATGGTTATTTGAATGGTTCAGAGGAAGTAGCCGTTAAAGTTGAACTTCTACTGAGAGTTCACCACACGAACTTGGTAAGCCTTGTCGGGTATTGCGATGAACGAGGTCACTTGGCTCTCATCTACGAATATATGTCCAACGTAGACTTAAAACATCACTTGTCAGGAAAGCATGATGTCTCTATTTTGAAGTGGAGTACTCGATTAAGAATAGCCATTGATGCCGCACTAGGATTGGAATACTTACATATTGGTTGTCGACCATCAATGGTACATAGAGATGTCAAAAGTACAAATATATTGTTGGACGATCAATTTACTGCCAAAATTGCGGATTTTGGGCTTTCAAGATCTTTCCAACTCGGAGATGAATCTCATATTTCAACAGTTGTTGCTGGTACTCCTGGATACCTTGATCCTGAAACGGGTCGGTTGGCTGAGATGAGCGATGTCTACAGCTTCGGGATTGTGTTATTGGAGATGATGACAAACCAACGTGTGATTGACCAAAACCGTGAAAAGCGACACATAACAGAATGGGTAGCTTTAGTGCTTAACAGAGGAGACATTACCAAGATCATGGATCCTAATCTTTACGGCGATTACAACTCAAATTCTGTTTGGAAAGCTCTTGAATTGGCTATGTCATGTGCAAACCCATCTTCCGAAAAACGACCAAGCATGTCCCAAGTTATCAGCGTACTAAAAGAGTGTCTTACTTCTGAAAACTTGATGAGAAATAAGAATCATGACATGGAATCCGATAGTTCCCTTGAACTGACCAAGAGCTTTGATACAGAAGTTGTCCCTCGTGCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

291

Amino Acids

32.7

Weight (kDa)

5.84

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 26 - 250 6.4e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 33 - 252 1.5e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023657)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45920 AT3G46355 AT3G46410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 198, 313, 507
AciI CCGC 2 cut(s) 279, 386
AclWI GGATC 3 cut(s) 464, 632, 645
AcsI RAATTY 1 cut(s) 667
AfaI GTAC 5 cut(s) 253, 327, 346, 454, 756
AfiI CCNNNNNNNGG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 8 cut(s) 17, 67, 98, 244, 402, 438, 689, 830
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 23, 513, 599, 683, 843
AluI AGCT 5 cut(s) 23, 513, 599, 683, 843
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 238, 612
AlwI GGATC 3 cut(s) 464, 632, 645
ApoI RAATTY 1 cut(s) 667
AsuHPI GGTGA 2 cut(s) 41, 107
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BamHI GGATCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 1 cut(s) 864
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 2 cut(s) 325, 721
BceAI ACGGC 2 cut(s) 71, 667
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 238, 612
BfaI CTAG 2 cut(s) 284, 870
BfmI CTRYAG 1 cut(s) 508
BfuI GTATCC 1 cut(s) 455
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 642
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 2 cut(s) 98, 483
BseRI GAGGAG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 25
BslFI GGGAC 2 cut(s) 724, 845
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 238, 612
BsmFI GGGAC 2 cut(s) 724, 845
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 5 cut(s) 364, 404, 469, 630, 637
BspACI CCGC 2 cut(s) 279, 386
BspCNI CTCAG 2 cut(s) 99, 484
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 3 cut(s) 464, 632, 645
BssMI GATC 5 cut(s) 364, 404, 469, 630, 637
BssSI CACGAG 1 cut(s) 864
Bst2BI CACGAG 1 cut(s) 864
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 442, 569
BstDEI CTNAG 2 cut(s) 107, 492
BstKTI GATC 5 cut(s) 367, 407, 472, 633, 640
BstMAI GTCTC 2 cut(s) 238, 612
BstMBI GATC 5 cut(s) 364, 404, 469, 630, 637
BstMWI GCNNNNNNNGC 2 cut(s) 275, 383
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 457
BstSFI CTRYAG 1 cut(s) 508
BstX2I RGATCY 2 cut(s) 404, 637
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 2 cut(s) 404, 637
BsuI GTATCC 1 cut(s) 455
BtgZI GCGATG 2 cut(s) 165, 516
CciI TCATGA 1 cut(s) 802
Csp6I GTAC 5 cut(s) 252, 326, 345, 453, 755
CviAII CATG 7 cut(s) 56, 227, 634, 702, 736, 803, 808
CviQI GTAC 5 cut(s) 252, 326, 345, 453, 755
DdeI CTNAG 2 cut(s) 107, 492
DpnI GATC 5 cut(s) 366, 406, 471, 632, 639
DpnII GATC 5 cut(s) 364, 404, 469, 630, 637
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 7 cut(s) 59, 230, 637, 705, 739, 806, 811
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 753, 785
FaqI GGGAC 2 cut(s) 724, 845
FatI CATG 7 cut(s) 55, 226, 633, 701, 735, 802, 807
FblI GTMKAC 3 cut(s) 198, 313, 507
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 284, 870
GluI GCNGC 1 cut(s) 279
Hin1II CATG 7 cut(s) 59, 230, 637, 705, 739, 806, 811
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 3 cut(s) 425, 799, 812
HphI GGTGA 2 cut(s) 41, 107
Hpy166II GTNNAC 4 cut(s) 115, 199, 314, 508
Hpy188I TCNGA 5 cut(s) 76, 419, 721, 778, 817
Hpy188III TCNNGA 6 cut(s) 219, 402, 473, 517, 686, 803
Hpy8I GTNNAC 4 cut(s) 115, 199, 314, 508
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 442, 569
HpyCH4IV ACGT 2 cut(s) 195, 550
HpyCH4V TGCA 1 cut(s) 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 383
HpyF3I CTNAG 2 cut(s) 107, 492
HpySE526I ACGT 2 cut(s) 195, 550
Hsp92II CATG 7 cut(s) 59, 230, 637, 705, 739, 806, 811
Kzo9I GATC 5 cut(s) 364, 404, 469, 630, 637
LpnPI CCDG 5 cut(s) 204, 435, 444, 471, 486
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 284, 870
MaeII ACGT 2 cut(s) 195, 550
MaeIII GTNAC 2 cut(s) 8, 161
MalI GATC 5 cut(s) 366, 406, 471, 632, 639
MboI GATC 5 cut(s) 364, 404, 469, 630, 637
MboII GAAGA 1 cut(s) 708
MflI RGATCY 2 cut(s) 404, 637
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 4 cut(s) 368, 381, 667, 689
MmeI TCCRAC 3 cut(s) 216, 339, 436
MnlI CCTC 5 cut(s) 29, 70, 152, 608, 873
MseI TTAA 4 cut(s) 90, 203, 260, 609
MslI CAYNNNNRTG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 275, 383
NdeII GATC 5 cut(s) 364, 404, 469, 630, 637
NlaIII CATG 7 cut(s) 59, 230, 637, 705, 739, 806, 811
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 739
PagI TCATGA 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 3 cut(s) 425, 799, 812
PfoI TCCNGGA 1 cut(s) 457
PkrI GCNGC 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 639
PsuI RGATCY 2 cut(s) 404, 637
RsaI GTAC 5 cut(s) 253, 327, 346, 454, 756
RsaNI GTAC 5 cut(s) 252, 326, 345, 453, 755
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 25
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 90, 203, 260, 609
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 5 cut(s) 364, 404, 469, 630, 637
ScaI AGTACT 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 4 cut(s) 368, 381, 667, 689
SsiI CCGC 2 cut(s) 279, 386
SspMI CTAG 2 cut(s) 284, 870
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 442, 569
TaiI ACGT 2 cut(s) 198, 553
TaqI TCGA 2 cut(s) 256, 313
TasI AATT 4 cut(s) 368, 381, 667, 689
TatI WGTACW 2 cut(s) 251, 344
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 425, 799, 812
Tru1I TTAA 4 cut(s) 90, 203, 260, 609
Tru9I TTAA 4 cut(s) 90, 203, 260, 609
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 168, 438
XapI RAATTY 1 cut(s) 667
XceI RCATGY 1 cut(s) 739
XmiI GTMKAC 3 cut(s) 198, 313, 507
XspI CTAG 2 cut(s) 284, 870
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.