AT3G46355

leucine-rich repeat protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0023657
Physical Location & Seq
Forward (+)
17039609 .. 17041680
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46355.1

Sequence Viewer

Length: 876 bp
ATGACAAACAACTTCCAAAGAGCTCTCGGTGAAGGAGGGTTTGGTACCGTATATCATGGTGATCTAGATAGTTCACAACAAGTAGCTGTCAAGGTCGATCTCCTTCTAAGGGTTCACCACATAAATTTGTTAAACCTGGTCGGTTATTGCGATGAACGAGATCACTTGGCTCTTATCTACGAATACATGTCGAATGGAGACCTAAAACACCATTTGTCAGGAGAACATGGTGGCTCTGTCTTGAGTTGGAATATACGACTACGAATAGCTGTCGATGCCGCACTAGGGTTGGAATACTTACATATTGGATGTCGACCATCAATGGTGCATAGAGATGTAAAAAGTACAAATATACTGTTGGACGAGAATTTCATGGCAAAAATTGCTGATTTTGGACTTTCAAGATCTTTCATACTCGGAGGTGAATCTCATGTGTCGACTGTTGTTGCTGGTTCACTTGGATATCTTGATCCCGAAACAAGTCGATTGGCTGAGATGAGCGATGTGTACAGTTTTGGGATTGTGTTATTGGAGATAATCACAAACCAACGTGTGATTGACAAAACCCGTGAAAAGCCCCACATAACAGAATGGACGGCATTTATGCTTAATAGAGGAGATATTACCAGAATCATGGATCCTAACCTTAACGGTGATTACAACTCCCATTCAGTCTGGAGAGCTCTTGAATTGGCAATGTCATGTGCAAATCCTTCGTCAGAAAATAGACCAAGCATGTCCCAGGTTGTTGCTGAACTGAAAGAGTGTCTTATTTCTGAAAACTCGCTGAGAAGTAAGAATCAAGATATGAGCTCACAAAGATCCTTGGACATGAGCATGAACTTTGATACCAAGGATGTCCCAAGTGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001653 GO:0002229 GO:0002237 GO:0002238 GO:0002239 GO:0002376 GO:0002831 GO:0002832 GO:0002833 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009960 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010646 GO:0010648 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031348 GO:0031349 GO:0032101 GO:0032102 GO:0032103 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042995 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0043901 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0046983 GO:0048316 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0090351 GO:0090406 GO:0098542 GO:0120025 GO:0140096 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901700 GO:1902288 GO:1902289 GO:1905957 GO:1905958 GO:2000071
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

291

Amino Acids

32.51

Weight (kDa)

5.61

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 253 2.1e-33 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 251 1.3e-30 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023657)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45920 AT3G46355 AT3G46410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 2 cut(s) 313, 437
AciI CCGC 1 cut(s) 279
AclWI GGATC 4 cut(s) 464, 632, 645, 816
AcsI RAATTY 2 cut(s) 124, 367
AfaI GTAC 3 cut(s) 46, 346, 509
AfiI CCNNNNNNNGG 2 cut(s) 109, 285
AflIII ACRYGT 2 cut(s) 186, 550
AgsI TTSAA 2 cut(s) 402, 689
AjnI CCWGG 2 cut(s) 135, 741
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 23, 86, 269, 683, 813
AluI AGCT 5 cut(s) 23, 86, 269, 683, 813
Alw21I GWGCWC 3 cut(s) 25, 685, 815
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 4 cut(s) 464, 632, 645, 816
ApoI RAATTY 2 cut(s) 124, 367
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
Asp718I GGTACC 1 cut(s) 44
AsuHPI GGTGA 5 cut(s) 41, 71, 107, 434, 665
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 3 cut(s) 25, 685, 815
Bbv12I GWGCWC 3 cut(s) 25, 685, 815
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 612
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 2 cut(s) 137, 743
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 65, 284
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 137, 743
BmiI GGNNCC 2 cut(s) 46, 639
BmrFI CCNGG 2 cut(s) 137, 743
BmsI GCATC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 741, 825, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 285
Bse3DI GCAATG 1 cut(s) 702
BseBI CCWGG 2 cut(s) 137, 743
BseDI CCNNGG 3 cut(s) 741, 825, 852
BseGI GGATG 2 cut(s) 314, 862
BseLI CCNNNNNNNGG 2 cut(s) 109, 285
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 483, 779
BseRI GAGGAG 1 cut(s) 630
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 3 cut(s) 25, 685, 815
BslFI GGGAC 2 cut(s) 724, 845
BslI CCNNNNNNNGG 2 cut(s) 109, 285
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 724, 845
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 25, 685, 815
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 484, 780
BspLI GGNNCC 2 cut(s) 46, 639
BspPI GGATC 4 cut(s) 464, 632, 645, 816
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 702
BsrGI TGTACA 1 cut(s) 507
BssECI CCNNGG 3 cut(s) 741, 825, 852
BssMI GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
BssT1I CCWWGG 2 cut(s) 825, 852
Bst2UI CCWGG 2 cut(s) 137, 743
Bst4CI ACNGT 5 cut(s) 49, 357, 442, 512, 653
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 507
BstDEI CTNAG 3 cut(s) 107, 492, 788
BstF5I GGATG 2 cut(s) 314, 862
BstKTI GATC 7 cut(s) 64, 100, 163, 407, 472, 640, 824
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
BstMWI GCNNNNNNNGC 2 cut(s) 275, 383
BstNI CCWGG 2 cut(s) 137, 743
BstNSI RCATGY 2 cut(s) 190, 739
BstSCI CCNGG 2 cut(s) 135, 741
BstX2I RGATCY 3 cut(s) 404, 637, 821
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 3 cut(s) 404, 637, 821
BtgZI GCGATG 2 cut(s) 165, 516
BtsCI GGATG 2 cut(s) 314, 862
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 3 cut(s) 45, 345, 508
CviJI RGCY 9 cut(s) 23, 86, 170, 234, 269, 491, 577, 683, 813
CviKI_1 RGCY 9 cut(s) 23, 86, 170, 234, 269, 491, 577, 683, 813
CviQI GTAC 3 cut(s) 45, 345, 508
DdeI CTNAG 3 cut(s) 107, 492, 788
DpnI GATC 7 cut(s) 63, 99, 162, 406, 471, 639, 823
DpnII GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
Ecl136II GAGCTC 3 cut(s) 23, 683, 813
Eco130I CCWWGG 2 cut(s) 825, 852
Eco24I GRGCYC 3 cut(s) 25, 685, 815
Eco31I GGTCTC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 464
Eco53kI GAGCTC 3 cut(s) 23, 683, 813
EcoICRI GAGCTC 3 cut(s) 23, 683, 813
EcoRII CCWGG 2 cut(s) 135, 741
EcoRV GATATC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 825, 852
EcoT38I GRGCYC 3 cut(s) 25, 685, 815
ErhI CCWWGG 2 cut(s) 825, 852
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 2 cut(s) 724, 845
FblI GTMKAC 2 cut(s) 313, 437
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 321, 869
FriOI GRGCYC 3 cut(s) 25, 685, 815
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 65, 284
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 697
HincII GTYRAC 2 cut(s) 314, 438
HindII GTYRAC 2 cut(s) 314, 438
HinfI GANTC 3 cut(s) 425, 630, 799
HphI GGTGA 5 cut(s) 41, 71, 107, 434, 665
Hpy166II GTNNAC 6 cut(s) 74, 115, 314, 438, 455, 508
Hpy188I TCNGA 3 cut(s) 419, 721, 778
Hpy188III TCNNGA 9 cut(s) 65, 219, 241, 402, 467, 473, 676, 686, 803
Hpy8I GTNNAC 6 cut(s) 74, 115, 314, 438, 455, 508
HpyAV CCTTC 3 cut(s) 26, 113, 723
HpyCH4III ACNGT 5 cut(s) 49, 357, 442, 512, 653
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 3 cut(s) 328, 707, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 383
HpyF3I CTNAG 3 cut(s) 107, 492, 788
HpySE526I ACGT 1 cut(s) 550
KpnI GGTACC 1 cut(s) 48
Kzo9I GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
LpnPI CCDG 8 cut(s) 122, 149, 204, 435, 640, 661, 728, 755
LweI GCATC 1 cut(s) 265
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 2 cut(s) 65, 284
MaeII ACGT 1 cut(s) 550
MalI GATC 7 cut(s) 63, 99, 162, 406, 471, 639, 823
MboI GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
MflI RGATCY 3 cut(s) 404, 637, 821
MhlI GDGCHC 3 cut(s) 25, 685, 815
MluCI AATT 4 cut(s) 124, 367, 381, 689
MmeI TCCRAC 3 cut(s) 227, 270, 339
MnlI CCTC 3 cut(s) 29, 413, 608
MseI TTAA 3 cut(s) 131, 609, 648
MslI CAYNNNNRTG 2 cut(s) 333, 836
MspR9I CCNGG 2 cut(s) 137, 743
MvaI CCWGG 2 cut(s) 137, 743
MwoI GCNNNNNNNGC 2 cut(s) 275, 383
NdeII GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
NlaIV GGNNCC 2 cut(s) 46, 639
NspI RCATGY 2 cut(s) 190, 739
PciI ACATGT 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 3 cut(s) 425, 630, 799
PkrI GCNGC 1 cut(s) 280
PscI ACATGT 1 cut(s) 186
Psp124BI GAGCTC 3 cut(s) 25, 685, 815
Psp6I CCWGG 2 cut(s) 135, 741
PspGI CCWGG 2 cut(s) 135, 741
PspN4I GGNNCC 2 cut(s) 46, 639
PsuI RGATCY 3 cut(s) 404, 637, 821
RsaI GTAC 3 cut(s) 46, 346, 509
RsaNI GTAC 3 cut(s) 45, 345, 508
RseI CAYNNNNRTG 2 cut(s) 333, 836
SacI GAGCTC 3 cut(s) 25, 685, 815
SalI GTCGAC 2 cut(s) 312, 436
SaqAI TTAA 3 cut(s) 131, 609, 648
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 7 cut(s) 61, 97, 160, 404, 469, 637, 821
ScrFI CCNGG 2 cut(s) 137, 743
SduI GDGCHC 3 cut(s) 25, 685, 815
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 333, 836
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 124, 367, 381, 689
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 65, 284
SstI GAGCTC 3 cut(s) 25, 685, 815
StyD4I CCNGG 2 cut(s) 135, 741
StyI CCWWGG 2 cut(s) 825, 852
TaaI ACNGT 5 cut(s) 49, 357, 442, 512, 653
TaiI ACGT 1 cut(s) 553
TaqI TCGA 6 cut(s) 96, 191, 273, 313, 437, 484
TasI AATT 4 cut(s) 124, 367, 381, 689
TatI WGTACW 2 cut(s) 344, 507
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 425, 630, 799
Tru1I TTAA 3 cut(s) 131, 609, 648
Tru9I TTAA 3 cut(s) 131, 609, 648
TspDTI ATGAA 4 cut(s) 168, 361, 400, 854
XapI RAATTY 2 cut(s) 124, 367
XbaI TCTAGA 1 cut(s) 64
XceI RCATGY 2 cut(s) 190, 739
XmiI GTMKAC 2 cut(s) 313, 437
XspI CTAG 2 cut(s) 65, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.