AT3G47420

glycerol-3-phosphate transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17472297 .. 17475274
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47420.3

Sequence Viewer

Length: 1572 bp
ATGGGTTCTCTAATGCAATCTGAACCAGAGATGGAGAAAAAACCGATAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAGTGCTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGCTATCACGCTGCAAGAAAAACAACAAGTATTGTCAAAAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAAACTCACTTCTTTTGAGATTTACTTCGTTTGGTTCCTCTGTAAAAGAAGAAGGTGGTTGGGCTCCTTTCAATGGTCCTGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTTGCGGTTTACGCTTTCGGAATGTATTTCGCTGGACATTTGGGGGATAGGATGAATCTTAGGATCTTCTTGACTGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGTTATTGGGGTAACATTCATAGCTTTTACTATTTCTTGATAATGCAAATGTTAGCTGGTTTGTTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTTGTTGGAAACTGGTTTAACAAGAAGAAGAGAGGTTTGATCATGGGGATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGCTCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGTGTTATCATTGTGGTGATTGGTTTGGTGAATTACGCTTTCTTGCCTGTTAGTCCAGAGAATGTTGGAGCAGAGCGAGACGAGGTTCTTGATTCTTCGTCTGAGAAAATCGGAAACTCTGTTAATGAGCCGTTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTTGGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTCTGTCTCTTCTTTGCTAAGTTGGTCGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCGATTGAAGGCGAATATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTAGGAGGTGTGGTTGGTGGAATCATGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCTATTACGGCTGCGAGTTTCATGTACTGCTCAATTCCAGCTTTGTTCTTCTACCGTAGCTACGGACATGTATCGTTATTAGCCAACGCGTCTCTCATGTTCTTGACCGGGATGTTGGTTAACGGTCCTTACGCTTTGATTACAACGGCAGTTTCAGCTGATCTTGGAACACACAGCTCGTTGAAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATTATCGATGGAACGGGATCCGTTGGAGCGGCGGTCGGACCCTTACTAACGGGTTACATATCGTCGAGGGGTAGCTGGACCGCGGTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTAATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCTAGGCCATCGGAAGAATGTAGATCTCCGGTGGACTATGTCCAAGATCATGTGATGGAAGTGTGA

Protein Analysis

523

Amino Acids

56.31

Weight (kDa)

5.95

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 93 - 251 8.4e-06 Sugar (and other) transporter
MFS_1 PF07690 105 - 427 2e-41 Major Facilitator Superfamily
MFS_1 PF07690 339 - 499 2.6e-12 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1361
AccII CGCG 3 cut(s) 920, 1202, 1415
AciI CCGC 7 cut(s) 338, 1028, 1361, 1364, 1413, 1415, 1490
AclWI GGATC 4 cut(s) 185, 404, 1344, 1357
AcoI YGGCCR 2 cut(s) 533, 1479
AfaI GTAC 2 cut(s) 301, 1139
AfiI CCNNNNNNNGG 2 cut(s) 209, 287
AflIII ACRYGT 2 cut(s) 1180, 1200
AgsI TTSAA 5 cut(s) 286, 521, 887, 1001, 1297
AjnI CCWGG 1 cut(s) 691
Alw21I GWGCWC 2 cut(s) 187, 839
Alw26I GTCTC 3 cut(s) 765, 932, 1209
AlwI GGATC 4 cut(s) 185, 404, 1344, 1357
Ama87I CYCGRG 1 cut(s) 1306
AoxI GGCC 3 cut(s) 533, 1479, 1511
ApeKI GCWGC 5 cut(s) 152, 647, 650, 1124, 1439
Asp700I GAANNNNTTC 1 cut(s) 1036
AspLEI GCGC 2 cut(s) 913, 922
AspS9I GGNCC 4 cut(s) 290, 1238, 1370, 1410
AsuC2I CCSGG 2 cut(s) 903, 1222
AsuHPI GGTGA 3 cut(s) 326, 721, 733
AsuNHI GCTAGC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 1306
AvaII GGWCC 4 cut(s) 290, 1238, 1370, 1410
BalI TGGCCA 1 cut(s) 535
BamHI GGATCC 1 cut(s) 1349
BanII GRGCYC 2 cut(s) 280, 839
Bbv12I GWGCWC 2 cut(s) 187, 839
BbvI GCAGC 5 cut(s) 139, 634, 637, 1111, 1426
BccI CCATC 8 cut(s) 25, 290, 544, 669, 1334, 1426, 1522, 1555
BceAI ACGGC 4 cut(s) 808, 1137, 1275, 1344
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 45
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 2 cut(s) 903, 1222
BcoDI GTCTC 3 cut(s) 765, 932, 1209
BfaI CTAG 2 cut(s) 141, 1509
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 1529
BisI GCNGC 6 cut(s) 153, 648, 651, 1125, 1362, 1440
BlsI GCNGC 6 cut(s) 154, 649, 652, 1126, 1363, 1441
Bme1390I CCNGG 3 cut(s) 693, 903, 1222
Bme18I GGWCC 4 cut(s) 290, 1238, 1370, 1410
BmeT110I CYCGRG 1 cut(s) 1306
BmgT120I GGNCC 4 cut(s) 290, 1238, 1370, 1410
BmiI GGNNCC 5 cut(s) 250, 279, 971, 1351, 1372
BmrFI CCNGG 3 cut(s) 693, 903, 1222
BmtI GCTAGC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 903, 1222
Bsa29I ATCGAT 2 cut(s) 321, 1338
BsaJI CCNNGG 1 cut(s) 1413
BsaWI WCCGGW 1 cut(s) 1534
BsaXI ACNNNNNCTCC 4 cut(s) 1050, 1080, 1350, 1380
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 287
Bse1I ACTGG 4 cut(s) 430, 566, 637, 971
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 2 cut(s) 321, 1338
BseDI CCNNGG 1 cut(s) 1413
BseGI GGATG 3 cut(s) 390, 680, 1230
BseLI CCNNNNNNNGG 2 cut(s) 209, 287
BseMII CTCAG 2 cut(s) 786, 1494
BseNI ACTGG 4 cut(s) 430, 566, 637, 971
BseXI GCAGC 5 cut(s) 139, 634, 637, 1111, 1426
Bsh1236I CGCG 3 cut(s) 920, 1202, 1415
Bsh1285I CGRYCG 1 cut(s) 1368
BshFI GGCC 3 cut(s) 535, 1481, 1513
BshVI ATCGAT 2 cut(s) 321, 1338
BsiEI CGRYCG 1 cut(s) 1368
BsiHKAI GWGCWC 2 cut(s) 187, 839
BsiHKCI CYCGRG 1 cut(s) 1306
BsiSI CCGG 3 cut(s) 903, 1221, 1535
BslI CCNNNNNNNGG 2 cut(s) 209, 287
BsmAI GTCTC 3 cut(s) 765, 932, 1209
BsmBI CGTCTC 2 cut(s) 765, 1209
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 3 cut(s) 535, 1481, 1513
BsoBI CYCGRG 1 cut(s) 1306
Bsp1286I GDGCHC 3 cut(s) 187, 280, 839
BspACI CCGC 7 cut(s) 338, 1028, 1361, 1364, 1413, 1415, 1490
BspANI GGCC 3 cut(s) 535, 1481, 1513
BspCNI CTCAG 2 cut(s) 787, 1495
BspDI ATCGAT 2 cut(s) 321, 1338
BspFNI CGCG 3 cut(s) 920, 1202, 1415
BspLI GGNNCC 5 cut(s) 250, 279, 971, 1351, 1372
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 4 cut(s) 185, 404, 1344, 1357
BsrBI CCGCTC 1 cut(s) 1361
BsrI ACTGG 4 cut(s) 430, 566, 637, 971
BssECI CCNNGG 1 cut(s) 1413
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 6 cut(s) 95, 304, 409, 1169, 1238, 1324
Bst6I CTCTTC 2 cut(s) 572, 935
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 392, 795, 939, 1503
BstDSI CCRYGG 1 cut(s) 1413
BstF5I GGATG 3 cut(s) 390, 680, 1230
BstFNI CGCG 3 cut(s) 920, 1202, 1415
BstHHI GCGC 2 cut(s) 913, 922
BstMAI GTCTC 3 cut(s) 765, 932, 1209
BstMCI CGRYCG 1 cut(s) 1368
BstMWI GCNNNNNNNGC 9 cut(s) 104, 335, 344, 917, 919, 1121, 1268, 1448, 1487
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 1 cut(s) 1184
BstSCI CCNGG 3 cut(s) 691, 901, 1220
BstUI CGCG 3 cut(s) 920, 1202, 1415
BstV1I GCAGC 5 cut(s) 139, 634, 637, 1111, 1426
BstX2I RGATCY 3 cut(s) 396, 1349, 1529
BstYI RGATCY 3 cut(s) 396, 1349, 1529
Bsu15I ATCGAT 2 cut(s) 321, 1338
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 3 cut(s) 535, 1481, 1513
BsuTUI ATCGAT 2 cut(s) 321, 1338
BtgI CCRYGG 1 cut(s) 1413
BtsCI GGATG 3 cut(s) 390, 680, 1230
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 2 cut(s) 913, 922
Cfr13I GGNCC 4 cut(s) 290, 1238, 1370, 1410
Cfr42I CCGCGG 1 cut(s) 1416
ClaI ATCGAT 2 cut(s) 321, 1338
CseI GACGC 1 cut(s) 1191
Csp6I GTAC 2 cut(s) 300, 1138
CviAII CATG 6 cut(s) 592, 1078, 1135, 1181, 1210, 1556
CviQI GTAC 2 cut(s) 300, 1138
DdeI CTNAG 4 cut(s) 392, 795, 939, 1503
EaeI YGGCCR 2 cut(s) 533, 1479
Eam1104I CTCTTC 2 cut(s) 572, 935
EarI CTCTTC 2 cut(s) 572, 935
Ecl136II GAGCTC 1 cut(s) 837
Eco24I GRGCYC 2 cut(s) 280, 839
Eco47I GGWCC 4 cut(s) 290, 1238, 1370, 1410
Eco53kI GAGCTC 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 1306
EcoICRI GAGCTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 691
EcoT38I GRGCYC 2 cut(s) 280, 839
Esp3I CGTCTC 2 cut(s) 765, 1209
FaeI CATG 6 cut(s) 595, 1081, 1138, 1184, 1213, 1559
FatI CATG 6 cut(s) 591, 1077, 1134, 1180, 1209, 1555
FauI CCCGC 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 588
Fnu4HI GCNGC 6 cut(s) 153, 648, 651, 1125, 1362, 1440
FokI GGATG 3 cut(s) 397, 687, 1237
FriOI GRGCYC 2 cut(s) 280, 839
Fsp4HI GCNGC 6 cut(s) 153, 648, 651, 1125, 1362, 1440
FspBI CTAG 2 cut(s) 141, 1509
GlaI GCGC 2 cut(s) 912, 921
GluI GCNGC 6 cut(s) 153, 648, 651, 1125, 1362, 1440
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 3 cut(s) 535, 1481, 1513
HapII CCGG 3 cut(s) 903, 1221, 1535
HgaI GACGC 1 cut(s) 1191
HhaI GCGC 2 cut(s) 913, 922
Hin1II CATG 6 cut(s) 595, 1081, 1138, 1184, 1213, 1559
Hin6I GCGC 2 cut(s) 911, 920
HinP1I GCGC 2 cut(s) 911, 920
HincII GTYRAC 2 cut(s) 1234, 1464
HindII GTYRAC 2 cut(s) 1234, 1464
HinfI GANTC 8 cut(s) 57, 388, 785, 845, 879, 898, 1074, 1505
HpaI GTTAAC 1 cut(s) 1234
HpaII CCGG 3 cut(s) 903, 1221, 1535
HphI GGTGA 3 cut(s) 326, 721, 733
Hpy166II GTNNAC 5 cut(s) 343, 435, 1234, 1464, 1540
Hpy8I GTNNAC 5 cut(s) 343, 435, 1234, 1464, 1540
Hpy99I CGWCG 2 cut(s) 844, 1399
HpyAV CCTTC 2 cut(s) 260, 995
HpyCH4III ACNGT 6 cut(s) 95, 304, 409, 1169, 1238, 1324
HpyCH4IV ACGT 3 cut(s) 67, 125, 981
HpyCH4V TGCA 4 cut(s) 16, 155, 499, 1109
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 335, 344, 917, 919, 1121, 1268, 1448, 1487
HpyF3I CTNAG 4 cut(s) 392, 795, 939, 1503
HpySE526I ACGT 3 cut(s) 67, 125, 981
Hsp92II CATG 6 cut(s) 595, 1081, 1138, 1184, 1213, 1559
HspAI GCGC 2 cut(s) 911, 920
Ksp22I TGATCA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 1234
KspI CCGCGG 1 cut(s) 1416
LmnI GCTCC 5 cut(s) 283, 761, 975, 1358, 1436
Lsp1109I GCAGC 5 cut(s) 139, 634, 637, 1111, 1426
MaeI CTAG 2 cut(s) 141, 1509
MaeII ACGT 3 cut(s) 67, 125, 981
MaeIII GTNAC 6 cut(s) 121, 464, 825, 1085, 1324, 1385
MbiI CCGCTC 1 cut(s) 1361
MflI RGATCY 3 cut(s) 396, 1349, 1529
MhlI GDGCHC 3 cut(s) 187, 280, 839
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 3 cut(s) 724, 1101, 1146
MluI ACGCGT 1 cut(s) 1200
MluNI TGGCCA 1 cut(s) 535
MlyI GAGTC 1 cut(s) 1514
MmeI TCCRAC 7 cut(s) 391, 535, 739, 822, 856, 1336, 1348
MnlI CCTC 9 cut(s) 204, 262, 575, 769, 888, 971, 1052, 1392, 1461
Mox20I TGGCCA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 1036
MscI TGGCCA 1 cut(s) 535
MseI TTAA 3 cut(s) 567, 816, 1233
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 535
MspA1I CMGCKG 3 cut(s) 1028, 1271, 1415
MspI CCGG 3 cut(s) 903, 1221, 1535
MspR9I CCNGG 3 cut(s) 693, 903, 1222
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 3 cut(s) 920, 1202, 1415
MwoI GCNNNNNNNGC 9 cut(s) 104, 335, 344, 917, 919, 1121, 1268, 1448, 1487
NciI CCSGG 2 cut(s) 903, 1222
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 6 cut(s) 595, 1081, 1138, 1184, 1213, 1559
NlaIV GGNNCC 5 cut(s) 250, 279, 971, 1351, 1372
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 1184
PaeR7I CTCGAG 1 cut(s) 1306
PciI ACATGT 1 cut(s) 1180
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 1036
PfeI GAWTC 7 cut(s) 57, 388, 785, 845, 879, 898, 1074
PflFI GACNNNGTC 1 cut(s) 1544
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 6 cut(s) 154, 649, 652, 1126, 1363, 1441
PleI GAGTC 1 cut(s) 1513
PpsI GAGTC 1 cut(s) 1513
PscI ACATGT 1 cut(s) 1180
Psp124BI GAGCTC 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 5 cut(s) 250, 279, 971, 1351, 1372
PspPI GGNCC 4 cut(s) 290, 1238, 1370, 1410
PsuI RGATCY 3 cut(s) 396, 1349, 1529
PsyI GACNNNGTC 1 cut(s) 1544
PvuII CAGCTG 1 cut(s) 1271
RsaI GTAC 2 cut(s) 301, 1139
RsaNI GTAC 2 cut(s) 300, 1138
RseI CAYNNNNRTG 1 cut(s) 707
SacI GAGCTC 1 cut(s) 839
SacII CCGCGG 1 cut(s) 1416
SaqAI TTAA 3 cut(s) 567, 816, 1233
SatI GCNGC 6 cut(s) 153, 648, 651, 1125, 1362, 1440
Sau96I GGNCC 4 cut(s) 290, 1238, 1370, 1410
SchI GAGTC 1 cut(s) 1514
ScrFI CCNGG 3 cut(s) 693, 903, 1222
SduI GDGCHC 3 cut(s) 187, 280, 839
Sfr274I CTCGAG 1 cut(s) 1306
Sfr303I CCGCGG 1 cut(s) 1416
SgrBI CCGCGG 1 cut(s) 1416
SinI GGWCC 4 cut(s) 290, 1238, 1370, 1410
SlaI CTCGAG 1 cut(s) 1306
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 1306
SmoI CTYRAG 1 cut(s) 1306
Sse9I AATT 3 cut(s) 724, 1101, 1146
SsiI CCGC 7 cut(s) 338, 1028, 1361, 1364, 1413, 1415, 1490
SspI AATATT 1 cut(s) 1010
SspMI CTAG 2 cut(s) 141, 1509
SstI GAGCTC 1 cut(s) 839
StyD4I CCNGG 3 cut(s) 691, 901, 1220
TaaI ACNGT 6 cut(s) 95, 304, 409, 1169, 1238, 1324
TaiI ACGT 3 cut(s) 70, 128, 984
TaqI TCGA 6 cut(s) 321, 1040, 1050, 1307, 1338, 1397
TaqII GACCGA 1 cut(s) 1113
TasI AATT 3 cut(s) 724, 1101, 1146
TatI WGTACW 1 cut(s) 1137
TauI GCSGC 1 cut(s) 1364
TfiI GAWTC 7 cut(s) 57, 388, 785, 845, 879, 898, 1074
Tru1I TTAA 3 cut(s) 567, 816, 1233
Tru9I TTAA 3 cut(s) 567, 816, 1233
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 5 cut(s) 152, 647, 650, 1124, 1439
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 401, 461, 871, 1123
TspGWI ACGGA 2 cut(s) 1191, 1342
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 1544
VpaK11BI GGWCC 4 cut(s) 290, 1238, 1370, 1410
XceI RCATGY 1 cut(s) 1184
XhoI CTCGAG 1 cut(s) 1306
XmnI GAANNNNTTC 1 cut(s) 1036
XspI CTAG 2 cut(s) 141, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.