Rh1AG393700

glycerol-3-phosphate transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
62225050 .. 62228400
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG393700.1

Sequence Viewer

Length: 1572 bp
ATGGGACCAATGGAAGAGGGAGCTGCTGAGACAAATTACACCAAGCCCTTGGGGATTCGATACATAGAGTACATAAAGAGATCGAAGATTTCATACAAAACCCACCAAGTTATTGTTTTGATTGTTACTTTTCTAGCCTATGCAAGCTACCATGCTGCCCGGAAAACCACTAGTGTGGTCAAGAGTACTCTTGATCCTGCATCCGATGAGGTGGGGTTGAGGTTCTTGTCATGGAGGATGAGTTACTTGGGTCAACCAGGGGAAAGAAGGAGACGATTTTCGTGGATTCTTGGAGATGGATGGGCACCATTTGATGGATCAGATGGAACAGCCTTGCTTGGTGAAATTGATGTAGCTTTTCTAGCTGTTTATGCTATAGGAATGTACTTTTCTGGTCATTTGGGTGATAGATTAAATTTGAGGATTTTTTTGACTATAGGAATGGTGGGAACAGGTGTGTTTACTTCGCTGTTTGGAATTGGGTATTGGGGAAACATTCACAGCTTCTATTACTACCTTGGGGTTCAAATGCTTGCTGGTTTGTTCCAATCGACGGGGTGGCCTTCGGTGGTTGCAGTGGTTGGTAATTGGTTTGGGAAGAAGAAGAGAGGGTTGATAATGGGGATATGGAATGCTCACACTTCTGTTGGGAACATTACTGGGTCTTTGGTTGCTTCTGCTTTATTGCAATATGGATGGGGTTGGTCTTTTGTAGTGCCTGGTTTGATGATTGCTACAATTGGTGTGGTGGTTTTTCTTTTCTTACCGGTTAGTCCTGAGTCTGTGGGAGTTAGCGAAGAGGATGAATTAGACTCTCCAAAGAAAAGCGGGCCGGAAGAGACTGAACCATTGTTGACATCAAGGGCAGAGGTGAAGGATCAACCTGTGGGGTTCATTGAAGCTTGGAAAATTCCTGGTGTTGCTCCTTTTGCTCTTTGCCTGTTCTTTTCCAAATTGGTGGCTTATACATTTCTCTATTGGCTTCCTTTCTACATTAGCCATACAGCTATTGATGGGCAATACTTATCAGATGCGGCGTCTGGTACCTTATCGACATTGTTTGATGTAGGAGGTGTGCTTGGAGGAATCCTTGCCGGACATATTTCTGACCGGTTAGATGCTAGAGCAATAACAGCTGCTAGTTTCATGTATTGTGCTATCCCTGCTCTCTTTTTATACCGGAGCTATGGAAGCATATCCTTGACTGTAAACATTATCCTTATGTTCATCACCGGCATGTTTGTTAATGGGCCATATGCTCTAATAACAACGGCCGTCTCAGCAGACCTGGGAACACATAGCTCGTTGCGTGGAAACTCGAGGGCATTGGCAACTGTAACTGCTATTATCGATGGAACAGGCTCCGTAGGGGCTGCAATTGGTCCATTGGTAACTGGCTACATTTCTGCCGAGAGCTGGAGTGCAGTTTTCACAATGCTGATGGGAGCAGCTCTAATTGCAGGGTTGCTTCTAACTAGGCTTGTTATAGCCGAGGTTTCTGCAAAGATCGAAGAATCAAGAATGCGTAGGGGGTCTACTTCAAGGTCTCAACCTGCTGTAGTTGATGTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

56.42

Weight (kDa)

7.1

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 113 - 432 2.1e-42 Major Facilitator Superfamily
MFS_1 PF07690 343 - 500 6.6e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1561
Acc65I GGTACC 1 cut(s) 1043
AccB1I GGYRCC 2 cut(s) 304, 1043
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 1 cut(s) 1535
AciI CCGC 2 cut(s) 828, 1034
AclWI GGATC 3 cut(s) 188, 325, 885
AcoI YGGCCR 1 cut(s) 1272
AcsI RAATTY 2 cut(s) 415, 909
AcyI GRCGYC 1 cut(s) 1037
AfaI GTAC 4 cut(s) 71, 187, 386, 1045
AfiI CCNNNNNNNGG 3 cut(s) 314, 553, 1416
AgeI ACCGGT 2 cut(s) 766, 1110
AgsI TTSAA 3 cut(s) 527, 899, 1542
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 4 cut(s) 256, 718, 913, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AleI CACNNNNGTG 1 cut(s) 173
Alw26I GTCTC 5 cut(s) 23, 265, 833, 1282, 1551
AlwI GGATC 3 cut(s) 188, 325, 885
Ama87I CYCGRG 1 cut(s) 1318
AoxI GGCC 4 cut(s) 560, 830, 1250, 1272
ApeKI GCWGC 5 cut(s) 23, 155, 1136, 1373, 1448
ApoI RAATTY 2 cut(s) 415, 909
AsiGI ACCGGT 2 cut(s) 766, 1110
Asp718I GGTACC 1 cut(s) 1043
AspS9I GGNCC 4 cut(s) 5, 830, 1250, 1382
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 4 cut(s) 353, 416, 883, 1222
AvaI CYCGRG 1 cut(s) 1318
AvaII GGWCC 2 cut(s) 5, 1382
BaeGI GKGCMC 1 cut(s) 307
BanI GGYRCC 2 cut(s) 304, 1043
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
BbvI GCAGC 5 cut(s) 10, 142, 1123, 1360, 1460
BccI CCATC 8 cut(s) 290, 294, 308, 317, 690, 1007, 1346, 1435
BceAI ACGGC 2 cut(s) 1259, 1287
BcgI CGANNNNNNTGC 2 cut(s) 1481, 1515
BciT130I CCWGG 4 cut(s) 258, 720, 915, 1289
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 5 cut(s) 23, 265, 833, 1282, 1551
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 6 cut(s) 134, 171, 362, 1122, 1140, 1476
BfmI CTRYAG 3 cut(s) 375, 435, 1557
BfuAI ACCTGC 1 cut(s) 1561
BisI GCNGC 6 cut(s) 24, 156, 1035, 1137, 1374, 1449
BlsI GCNGC 6 cut(s) 25, 157, 1036, 1138, 1375, 1450
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 5 cut(s) 160, 258, 720, 915, 1289
Bme18I GGWCC 2 cut(s) 5, 1382
BmeT110I CYCGRG 1 cut(s) 1318
BmgT120I GGNCC 4 cut(s) 5, 830, 1250, 1382
BmiI GGNNCC 4 cut(s) 6, 306, 1045, 1363
BmrFI CCNGG 5 cut(s) 160, 258, 720, 915, 1289
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 3 cut(s) 209, 1021, 1108
BmuI ACTGGG 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 1438
BpuMI CCSGG 1 cut(s) 160
Bsa29I ATCGAT 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 1037
BsaI GGTCTC 1 cut(s) 1551
BsaJI CCNNGG 5 cut(s) 48, 257, 517, 1288, 1491
BsaWI WCCGGW 3 cut(s) 766, 1110, 1179
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 553, 1416
Bse118I RCCGGY 3 cut(s) 766, 1110, 1232
Bse1I ACTGG 2 cut(s) 664, 1399
BseBI CCWGG 4 cut(s) 258, 720, 915, 1289
BseCI ATCGAT 1 cut(s) 1350
BseDI CCNNGG 5 cut(s) 48, 257, 517, 1288, 1491
BseGI GGATG 5 cut(s) 200, 243, 305, 701, 808
BseLI CCNNNNNNNGG 3 cut(s) 314, 553, 1416
BseMII CTCAG 3 cut(s) 18, 768, 1293
BseNI ACTGG 2 cut(s) 664, 1399
BseSI GKGCMC 1 cut(s) 307
BseX3I CGGCCG 1 cut(s) 1272
BseXI GCAGC 5 cut(s) 10, 142, 1123, 1360, 1460
BsgI GTGCAG 1 cut(s) 1443
Bsh1285I CGRYCG 1 cut(s) 1275
BshFI GGCC 4 cut(s) 562, 832, 1252, 1274
BshNI GGYRCC 2 cut(s) 304, 1043
BshTI ACCGGT 2 cut(s) 766, 1110
BshVI ATCGAT 1 cut(s) 1350
BsiEI CGRYCG 1 cut(s) 1275
BsiHKCI CYCGRG 1 cut(s) 1318
BsiSI CCGG 7 cut(s) 160, 767, 833, 1095, 1111, 1180, 1233
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 314, 553, 1416
BsmAI GTCTC 5 cut(s) 23, 265, 833, 1282, 1551
BsmBI CGTCTC 2 cut(s) 265, 1282
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 2 cut(s) 637, 1527
BsnI GGCC 4 cut(s) 562, 832, 1252, 1274
Bso31I GGTCTC 1 cut(s) 1551
BsoBI CYCGRG 1 cut(s) 1318
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 5 cut(s) 80, 193, 317, 877, 1506
BspACI CCGC 2 cut(s) 828, 1034
BspANI GGCC 4 cut(s) 562, 832, 1252, 1274
BspCNI CTCAG 3 cut(s) 19, 769, 1292
BspDI ATCGAT 1 cut(s) 1350
BspLI GGNNCC 4 cut(s) 6, 306, 1045, 1363
BspMI ACCTGC 1 cut(s) 1561
BspPI GGATC 3 cut(s) 188, 325, 885
BspT107I GGYRCC 2 cut(s) 304, 1043
BspTNI GGTCTC 1 cut(s) 1551
BsrFI RCCGGY 3 cut(s) 766, 1110, 1232
BsrI ACTGG 2 cut(s) 664, 1399
BssAI RCCGGY 3 cut(s) 766, 1110, 1232
BssECI CCNNGG 5 cut(s) 48, 257, 517, 1288, 1491
BssMI GATC 5 cut(s) 80, 193, 317, 877, 1506
BssNI GRCGYC 1 cut(s) 1037
BssT1I CCWWGG 2 cut(s) 48, 517
Bst2UI CCWGG 4 cut(s) 258, 720, 915, 1289
Bst4CI ACNGT 2 cut(s) 1207, 1336
Bst6I CTCTTC 4 cut(s) 9, 599, 792, 831
BstACI GRCGYC 1 cut(s) 1037
BstC8I GCNNGC 3 cut(s) 145, 534, 830
BstDEI CTNAG 3 cut(s) 27, 777, 1279
BstF5I GGATG 5 cut(s) 200, 243, 305, 701, 808
BstKTI GATC 5 cut(s) 83, 196, 320, 880, 1509
BstMAI GTCTC 5 cut(s) 23, 265, 833, 1282, 1551
BstMBI GATC 5 cut(s) 80, 193, 317, 877, 1506
BstMCI CGRYCG 1 cut(s) 1275
BstMWI GCNNNNNNNGC 8 cut(s) 362, 371, 929, 1133, 1163, 1191, 1280, 1457
BstNI CCWGG 4 cut(s) 258, 720, 915, 1289
BstNSI RCATGY 1 cut(s) 1240
BstSCI CCNGG 5 cut(s) 158, 256, 718, 913, 1287
BstSFI CTRYAG 3 cut(s) 375, 435, 1557
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 5 cut(s) 10, 142, 1123, 1360, 1460
BstXI CCANNNNNNTGG 3 cut(s) 49, 175, 958
BstZI CGGCCG 1 cut(s) 1272
Bsu15I ATCGAT 1 cut(s) 1350
BsuRI GGCC 4 cut(s) 562, 832, 1252, 1274
BsuTUI ATCGAT 1 cut(s) 1350
BtsCI GGATG 5 cut(s) 200, 243, 305, 701, 808
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
BveI ACCTGC 1 cut(s) 1561
Cac8I GCNNGC 3 cut(s) 145, 534, 830
Cfr10I RCCGGY 3 cut(s) 766, 1110, 1232
Cfr13I GGNCC 4 cut(s) 5, 830, 1250, 1382
ClaI ATCGAT 1 cut(s) 1350
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 4 cut(s) 70, 186, 385, 1044
CspAI ACCGGT 2 cut(s) 766, 1110
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 4 cut(s) 152, 231, 1147, 1237
CviQI GTAC 4 cut(s) 70, 186, 385, 1044
DdeI CTNAG 3 cut(s) 27, 777, 1279
DpnI GATC 5 cut(s) 82, 195, 319, 879, 1508
DpnII GATC 5 cut(s) 80, 193, 317, 877, 1506
EaeI YGGCCR 1 cut(s) 1272
EagI CGGCCG 1 cut(s) 1272
Eam1104I CTCTTC 4 cut(s) 9, 599, 792, 831
EarI CTCTTC 4 cut(s) 9, 599, 792, 831
EclXI CGGCCG 1 cut(s) 1272
Eco130I CCWWGG 2 cut(s) 48, 517
Eco31I GGTCTC 1 cut(s) 1551
Eco47I GGWCC 2 cut(s) 5, 1382
Eco52I CGGCCG 1 cut(s) 1272
Eco88I CYCGRG 1 cut(s) 1318
EcoRII CCWGG 4 cut(s) 256, 718, 913, 1287
EcoT14I CCWWGG 2 cut(s) 48, 517
ErhI CCWWGG 2 cut(s) 48, 517
Esp3I CGTCTC 2 cut(s) 265, 1282
FaeI CATG 4 cut(s) 155, 234, 1150, 1240
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 151, 230, 1146, 1236
FauI CCCGC 1 cut(s) 821
FauNDI CATATG 1 cut(s) 1255
FblI GTMKAC 1 cut(s) 1535
Fnu4HI GCNGC 6 cut(s) 24, 156, 1035, 1137, 1374, 1449
FokI GGATG 5 cut(s) 187, 250, 312, 708, 815
Fsp4HI GCNGC 6 cut(s) 24, 156, 1035, 1137, 1374, 1449
FspBI CTAG 6 cut(s) 134, 171, 362, 1122, 1140, 1476
GluI GCNGC 6 cut(s) 24, 156, 1035, 1137, 1374, 1449
GsuI CTGGAG 1 cut(s) 1438
HaeIII GGCC 4 cut(s) 562, 832, 1252, 1274
HapII CCGG 7 cut(s) 160, 767, 833, 1095, 1111, 1180, 1233
HgaI GACGC 1 cut(s) 1026
Hin1I GRCGYC 1 cut(s) 1037
Hin1II CATG 4 cut(s) 155, 234, 1150, 1240
HincII GTYRAC 2 cut(s) 254, 855
HindII GTYRAC 2 cut(s) 254, 855
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 6 cut(s) 55, 286, 779, 812, 1086, 1514
HpaII CCGG 7 cut(s) 160, 767, 833, 1095, 1111, 1180, 1233
HphI GGTGA 4 cut(s) 353, 416, 883, 1222
Hpy166II GTNNAC 5 cut(s) 254, 462, 855, 1210, 1536
Hpy188I TCNGA 4 cut(s) 205, 322, 1030, 1108
Hpy188III TCNNGA 4 cut(s) 181, 191, 776, 1518
Hpy8I GTNNAC 5 cut(s) 254, 462, 855, 1210, 1536
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 3 cut(s) 261, 573, 868
HpyCH4III ACNGT 2 cut(s) 1207, 1336
HpyCH4V TGCA 8 cut(s) 143, 200, 575, 688, 1376, 1424, 1460, 1502
HpyF10VI GCNNNNNNNGC 8 cut(s) 362, 371, 929, 1133, 1163, 1191, 1280, 1457
HpyF3I CTNAG 3 cut(s) 27, 777, 1279
Hsp92I GRCGYC 1 cut(s) 1037
Hsp92II CATG 4 cut(s) 155, 234, 1150, 1240
KpnI GGTACC 1 cut(s) 1047
Kzo9I GATC 5 cut(s) 80, 193, 317, 877, 1506
LmnI GCTCC 5 cut(s) 20, 928, 1182, 1367, 1445
Lsp1109I GCAGC 5 cut(s) 10, 142, 1123, 1360, 1460
LweI GCATC 3 cut(s) 209, 1021, 1108
MaeI CTAG 6 cut(s) 134, 171, 362, 1122, 1140, 1476
MaeIII GTNAC 4 cut(s) 124, 242, 1336, 1390
MalI GATC 5 cut(s) 82, 195, 319, 879, 1508
MboI GATC 5 cut(s) 80, 193, 317, 877, 1506
MboII GAAGA 8 cut(s) 26, 97, 610, 613, 616, 809, 848, 1523
MfeI CAATTG 2 cut(s) 738, 1377
MhlI GDGCHC 1 cut(s) 307
MlyI GAGTC 2 cut(s) 788, 806
MseI TTAA 2 cut(s) 413, 1245
MslI CAYNNNNRTG 3 cut(s) 173, 402, 1235
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 7 cut(s) 160, 767, 833, 1095, 1111, 1180, 1233
MspR9I CCNGG 5 cut(s) 160, 258, 720, 915, 1289
MunI CAATTG 2 cut(s) 738, 1377
Mva1269I GAATGC 2 cut(s) 637, 1527
MvaI CCWGG 4 cut(s) 258, 720, 915, 1289
MwoI GCNNNNNNNGC 8 cut(s) 362, 371, 929, 1133, 1163, 1191, 1280, 1457
NciI CCSGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 1255
NdeII GATC 5 cut(s) 80, 193, 317, 877, 1506
NlaIII CATG 4 cut(s) 155, 234, 1150, 1240
NlaIV GGNNCC 4 cut(s) 6, 306, 1045, 1363
NmeAIII GCCGAG 2 cut(s) 1435, 1516
NspI RCATGY 1 cut(s) 1240
OliI CACNNNNGTG 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 1318
PctI GAATGC 2 cut(s) 637, 1527
PfeI GAWTC 4 cut(s) 55, 286, 1086, 1514
PflMI CCANNNNNTGG 1 cut(s) 314
PinAI ACCGGT 2 cut(s) 766, 1110
PkrI GCNGC 6 cut(s) 25, 157, 1036, 1138, 1375, 1450
PleI GAGTC 2 cut(s) 787, 806
PpsI GAGTC 2 cut(s) 787, 806
Psp6I CCWGG 4 cut(s) 256, 718, 913, 1287
PspGI CCWGG 4 cut(s) 256, 718, 913, 1287
PspN4I GGNNCC 4 cut(s) 6, 306, 1045, 1363
PspPI GGNCC 4 cut(s) 5, 830, 1250, 1382
PspXI VCTCGAGB 1 cut(s) 1318
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 4 cut(s) 71, 187, 386, 1045
RsaNI GTAC 4 cut(s) 70, 186, 385, 1044
RseI CAYNNNNRTG 3 cut(s) 173, 402, 1235
SaqAI TTAA 2 cut(s) 413, 1245
SatI GCNGC 6 cut(s) 24, 156, 1035, 1137, 1374, 1449
Sau3AI GATC 5 cut(s) 80, 193, 317, 877, 1506
Sau96I GGNCC 4 cut(s) 5, 830, 1250, 1382
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 2 cut(s) 788, 806
ScrFI CCNGG 5 cut(s) 160, 258, 720, 915, 1289
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 3 cut(s) 209, 1021, 1108
SfcI CTRYAG 3 cut(s) 375, 435, 1557
Sfr274I CTCGAG 1 cut(s) 1318
SinI GGWCC 2 cut(s) 5, 1382
SlaI CTCGAG 1 cut(s) 1318
SmiMI CAYNNNNRTG 3 cut(s) 173, 402, 1235
SmlI CTYRAG 1 cut(s) 1318
SmoI CTYRAG 1 cut(s) 1318
SpeI ACTAGT 1 cut(s) 170
SsiI CCGC 2 cut(s) 828, 1034
SspMI CTAG 6 cut(s) 134, 171, 362, 1122, 1140, 1476
StyD4I CCNGG 5 cut(s) 158, 256, 718, 913, 1287
StyI CCWWGG 2 cut(s) 48, 517
TaaI ACNGT 2 cut(s) 1207, 1336
TaqI TCGA 7 cut(s) 58, 83, 551, 1052, 1319, 1350, 1509
TatI WGTACW 3 cut(s) 69, 185, 384
TauI GCSGC 1 cut(s) 1037
TfiI GAWTC 4 cut(s) 55, 286, 1086, 1514
Tru1I TTAA 2 cut(s) 413, 1245
Tru9I TTAA 2 cut(s) 413, 1245
TscAI CASTG 1 cut(s) 582
TseI GCWGC 5 cut(s) 23, 155, 1136, 1373, 1448
TspDTI ATGAA 5 cut(s) 81, 819, 883, 1135, 1216
TspGWI ACGGA 1 cut(s) 1354
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 5, 1382
XapI RAATTY 2 cut(s) 415, 909
XceI RCATGY 1 cut(s) 1240
XhoI CTCGAG 1 cut(s) 1318
XmiI GTMKAC 1 cut(s) 1535
XspI CTAG 6 cut(s) 134, 171, 362, 1122, 1140, 1476
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.