AT3G50790

Embryogenesis-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006715
Physical Location & Seq
Reverse (-)
18879893 .. 18882237
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50790.2

Sequence Viewer

Length: 1227 bp
ATGGCGAGAGTCGCCTTTGCCACATCATCGCCGCCGTTAATCTCATCAGTTCGTACTCTCCGCCGTCATTTCTCAGTTTTCGCCGCCGCGAATCCAGAAATGTCTCGTCCCTCTCACCACAGCTCTCTCGAAGTTATCGGCGGAGGAAGTGATCGTTTCTTACCGTCGTTAAAGGACTCACTCGCTAAACCGTACAATGCGTTTCCTCTAATCGGATTTAACCGCCACGTGGAGACAATCTACGCATCTTTCTTTCGTTCTGTTCCTTTCGTTAGACTCCGCCGTGAATGTCTCCGAACTAAAGACAACGGCTCTGTTGCTTTGGATTGGGTCGCCGGCGAAGATAGGCACTTTCCTCCTGATTCACCAATCCTCATTTTGTTGCCAGGTTTAACAGGAGGAAGTCAAGATTCGTATGTTAGACATATGTTGTTAAGAGCTCAAAGTAAAAAATGGCGTTGTGTTGTGTTTAATAGCCGTGGTTGTGGAGATAGTCCTGTGACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGACATTGGTGAAGTGATTGATCATGTTGTTGATAAATTCCCAAAAGCCAATTTGTATGCTGCTGGATGGTCTCTTGGAGGCAACATTCTTGTTAACTATTTGGGTCAGGAATCTCATAACTGTCCTCTCACTGCTGCTGTTTCTTTGTGCAATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCATAAGGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAAACATTCTCTTCTTTTTGAAGACATAGGAGGTGAATTTAACATTCCTTTGGCTGCAAATGCTGAGACGGTTAGGGATTTCGATGATGGCTTAACCCGAGTCTCGTTCGGTTTCAAATCAGTAGATGAGTACTATTCCAAGTCGAGCAGCTCCAAAGCTATAAAACATGTCCGCATACCCTTGCTTTGCATTCAGGCAGCAAATGATCCCATTGCTCCTGAGAGAGGTATCCCTCGCGATGACATCAAGGCAAACCCAAACTGCGTGTTGATTGTGACACCAAGAGGAGGGCACTTGGGATGGGTGGCAGGTGAAGAAGCTCCCAACGGAGCTCCTTGGACCGACCAAGTGGTTATGGAGTTTCTGCAACATGTAGAGAATCGTGAAACCATTAACGGGGAGAGATCTTTCGAGGATGTCCATGATCAGATTCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

408

Amino Acids

45.17

Weight (kDa)

6.54

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 123 - 361 1.5e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 125 - 364 2.1e-09 Alpha/beta hydrolase family
Hydrolase_4 PF12146 148 - 338 1.1e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 1085
AccII CGCG 2 cut(s) 89, 1023
AciI CCGC 8 cut(s) 32, 61, 84, 87, 141, 223, 280, 958
AclWI GGATC 1 cut(s) 986
AcsI RAATTY 2 cut(s) 572, 821
AcvI CACGTG 1 cut(s) 229
AfaI GTAC 3 cut(s) 55, 194, 917
AfiI CCNNNNNNNGG 5 cut(s) 212, 229, 1010, 1073, 1182
AflIII ACRYGT 2 cut(s) 952, 1156
AgsI TTSAA 3 cut(s) 806, 901, 1220
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 6 cut(s) 123, 440, 936, 944, 1106, 1118
AluI AGCT 6 cut(s) 123, 440, 936, 944, 1106, 1118
Alw21I GWGCWC 2 cut(s) 442, 1120
Alw26I GTCTC 7 cut(s) 108, 227, 296, 531, 612, 845, 892
AlwI GGATC 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 5 cut(s) 596, 671, 839, 933, 983
ApoI RAATTY 2 cut(s) 572, 821
AspS9I GGNCC 1 cut(s) 1125
AsuHPI GGTGA 5 cut(s) 107, 357, 557, 830, 1109
AvaI CYCGRG 1 cut(s) 882
AvaII GGWCC 1 cut(s) 1125
BaeGI GKGCMC 1 cut(s) 1080
BanII GRGCYC 2 cut(s) 442, 1120
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 2 cut(s) 442, 1120
BbvI GCAGC 5 cut(s) 583, 658, 826, 945, 995
BccI CCATC 3 cut(s) 597, 866, 1080
BceAI ACGGC 5 cut(s) 19, 48, 267, 325, 462
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 1 cut(s) 1025
BclI TGATCA 2 cut(s) 556, 1210
BcoDI GTCTC 7 cut(s) 108, 227, 296, 531, 612, 845, 892
BfuAI ACCTGC 1 cut(s) 1085
BfuI GTATCC 1 cut(s) 1025
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 8 cut(s) 32, 84, 87, 597, 672, 840, 934, 984
BlsI GCNGC 8 cut(s) 33, 85, 88, 598, 673, 841, 935, 985
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 1125
BmeT110I CYCGRG 1 cut(s) 882
BmgT120I GGNCC 1 cut(s) 1125
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 478, 1121
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 229, 1010, 1073, 1182
Bse118I RCCGGY 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 478, 1121
BseGI GGATG 3 cut(s) 608, 1091, 1207
BseLI CCNNNNNNNGG 5 cut(s) 212, 229, 1010, 1073, 1182
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 4 cut(s) 87, 524, 840, 996
BseRI GAGGAG 2 cut(s) 498, 1086
BseSI GKGCMC 1 cut(s) 1080
BseXI GCAGC 5 cut(s) 583, 658, 826, 945, 995
Bsh1236I CGCG 2 cut(s) 89, 1023
BshFI GGCC 1 cut(s) 755
BsiHKAI GWGCWC 2 cut(s) 442, 1120
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 5 cut(s) 212, 229, 1010, 1073, 1182
BsmAI GTCTC 7 cut(s) 108, 227, 296, 531, 612, 845, 892
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 1 cut(s) 755
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 882
Bsp1286I GDGCHC 3 cut(s) 442, 1080, 1120
Bsp143I GATC 5 cut(s) 151, 556, 991, 1190, 1210
Bsp68I TCGCGA 1 cut(s) 1023
BspACI CCGC 8 cut(s) 32, 61, 84, 87, 141, 223, 280, 958
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 4 cut(s) 86, 523, 841, 997
BspFNI CGCG 2 cut(s) 89, 1023
BspMI ACCTGC 1 cut(s) 1085
BspPI GGATC 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 478, 1121
BssMI GATC 5 cut(s) 151, 556, 991, 1190, 1210
BssT1I CCWWGG 1 cut(s) 1121
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 4 cut(s) 165, 192, 659, 856
Bst6I CTCTTC 2 cut(s) 774, 801
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 4 cut(s) 73, 510, 849, 1005
BstDSI CCRYGG 1 cut(s) 478
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 3 cut(s) 608, 1091, 1207
BstFNI CGCG 2 cut(s) 89, 1023
BstKTI GATC 5 cut(s) 154, 559, 994, 1193, 1213
BstMAI GTCTC 7 cut(s) 108, 227, 296, 531, 612, 845, 892
BstMBI GATC 5 cut(s) 151, 556, 991, 1190, 1210
BstMWI GCNNNNNNNGC 2 cut(s) 11, 845
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 2 cut(s) 956, 1160
BstSCI CCNGG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 1080
BstUI CGCG 2 cut(s) 89, 1023
BstV1I GCAGC 5 cut(s) 583, 658, 826, 945, 995
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 1 cut(s) 1190
BstYI RGATCY 1 cut(s) 1190
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 1 cut(s) 755
BtgI CCRYGG 1 cut(s) 478
BtgZI GCGATG 2 cut(s) 12, 1038
BtsCI GGATG 3 cut(s) 608, 1091, 1207
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 666
BtuMI TCGCGA 1 cut(s) 1023
BveI ACCTGC 1 cut(s) 1085
Cac8I GCNNGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 1125
Csp6I GTAC 3 cut(s) 54, 193, 916
CviAII CATG 4 cut(s) 560, 953, 1157, 1208
CviQI GTAC 3 cut(s) 54, 193, 916
DdeI CTNAG 4 cut(s) 73, 510, 849, 1005
DpnI GATC 5 cut(s) 153, 558, 993, 1192, 1212
DpnII GATC 5 cut(s) 151, 556, 991, 1190, 1210
Eam1104I CTCTTC 2 cut(s) 774, 801
EarI CTCTTC 2 cut(s) 774, 801
EciI GGCGGA 3 cut(s) 50, 156, 269
Ecl136II GAGCTC 2 cut(s) 440, 1118
Eco130I CCWWGG 1 cut(s) 1121
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 442, 1120
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 1125
Eco53kI GAGCTC 2 cut(s) 440, 1118
Eco72I CACGTG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 882
EcoICRI GAGCTC 2 cut(s) 440, 1118
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 1121
EcoT38I GRGCYC 2 cut(s) 442, 1120
ErhI CCWWGG 1 cut(s) 1121
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 4 cut(s) 563, 956, 1160, 1211
FaqI GGGAC 1 cut(s) 93
FatI CATG 4 cut(s) 559, 952, 1156, 1207
FauNDI CATATG 1 cut(s) 426
FbaI TGATCA 2 cut(s) 556, 1210
Fnu4HI GCNGC 8 cut(s) 32, 84, 87, 597, 672, 840, 934, 984
FokI GGATG 3 cut(s) 615, 1098, 1214
FriOI GRGCYC 2 cut(s) 442, 1120
Fsp4HI GCNGC 8 cut(s) 32, 84, 87, 597, 672, 840, 934, 984
GluI GCNGC 8 cut(s) 32, 84, 87, 597, 672, 840, 934, 984
HaeIII GGCC 1 cut(s) 755
HapII CCGG 1 cut(s) 336
Hin1II CATG 4 cut(s) 563, 956, 1160, 1211
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 1 cut(s) 336
HphI GGTGA 5 cut(s) 107, 357, 557, 830, 1109
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 3 cut(s) 215, 296, 1215
Hpy188III TCNNGA 8 cut(s) 95, 128, 359, 407, 644, 1004, 1022, 1169
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 165, 192, 659, 856
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 687, 842, 975, 1153
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 845
HpyF3I CTNAG 4 cut(s) 73, 510, 849, 1005
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 4 cut(s) 563, 956, 1160, 1211
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
Ksp22I TGATCA 2 cut(s) 556, 1210
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 151, 556, 991, 1190, 1210
LmnI GCTCC 5 cut(s) 941, 1006, 1111, 1115, 1123
Lsp1109I GCAGC 5 cut(s) 583, 658, 826, 945, 995
LweI GCATC 1 cut(s) 254
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 499, 1060
MalI GATC 5 cut(s) 153, 558, 993, 1192, 1212
MboI GATC 5 cut(s) 151, 556, 991, 1190, 1210
MboII GAAGA 6 cut(s) 353, 728, 761, 788, 818, 1112
MflI RGATCY 1 cut(s) 1190
MhlI GDGCHC 3 cut(s) 442, 1080, 1120
MluCI AATT 3 cut(s) 572, 586, 821
MlyI GAGTC 4 cut(s) 18, 170, 270, 894
MreI CGCCGGCG 1 cut(s) 335
MroNI GCCGGC 1 cut(s) 335
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 1 cut(s) 387
MvnI CGCG 2 cut(s) 89, 1023
MwoI GCNNNNNNNGC 2 cut(s) 11, 845
NaeI GCCGGC 1 cut(s) 337
NdeI CATATG 1 cut(s) 426
NdeII GATC 5 cut(s) 151, 556, 991, 1190, 1210
NgoMIV GCCGGC 1 cut(s) 335
NlaIII CATG 4 cut(s) 563, 956, 1160, 1211
NmeAIII GCCGAG 1 cut(s) 500
NmuCI GTSAC 2 cut(s) 499, 1060
NruI TCGCGA 1 cut(s) 1023
NspI RCATGY 2 cut(s) 956, 1160
PaqCI CACCTGC 1 cut(s) 1085
PceI AGGCCT 1 cut(s) 755
PciI ACATGT 2 cut(s) 952, 1156
PctI GAATGC 1 cut(s) 975
PdiI GCCGGC 1 cut(s) 337
PfeI GAWTC 6 cut(s) 91, 362, 410, 647, 1165, 1216
PkrI GCNGC 8 cut(s) 33, 85, 88, 598, 673, 841, 935, 985
PleI GAGTC 4 cut(s) 17, 170, 270, 893
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 4 cut(s) 17, 170, 270, 893
Ppu21I YACGTR 1 cut(s) 229
PscI ACATGT 2 cut(s) 952, 1156
Psp124BI GAGCTC 2 cut(s) 442, 1120
Psp6I CCWGG 1 cut(s) 385
PspCI CACGTG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 1 cut(s) 1125
PsuI RGATCY 1 cut(s) 1190
RruI TCGCGA 1 cut(s) 1023
RsaI GTAC 3 cut(s) 55, 194, 917
RsaNI GTAC 3 cut(s) 54, 193, 916
SacI GAGCTC 2 cut(s) 442, 1120
SatI GCNGC 8 cut(s) 32, 84, 87, 597, 672, 840, 934, 984
Sau3AI GATC 5 cut(s) 151, 556, 991, 1190, 1210
Sau96I GGNCC 1 cut(s) 1125
ScaI AGTACT 1 cut(s) 917
SchI GAGTC 4 cut(s) 18, 170, 270, 894
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 3 cut(s) 442, 1080, 1120
SfaNI GCATC 1 cut(s) 254
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 1 cut(s) 1125
Sse9I AATT 3 cut(s) 572, 586, 821
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 8 cut(s) 32, 61, 84, 87, 141, 223, 280, 958
SspI AATATT 1 cut(s) 780
SstI GAGCTC 2 cut(s) 442, 1120
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 1121
TaaI ACNGT 4 cut(s) 165, 192, 659, 856
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 129, 761, 867, 929, 1197
TaqII GACCGA 1 cut(s) 1142
TasI AATT 3 cut(s) 572, 586, 821
TatI WGTACW 1 cut(s) 915
TauI GCSGC 3 cut(s) 34, 86, 89
TfiI GAWTC 6 cut(s) 91, 362, 410, 647, 1165, 1216
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 2 cut(s) 499, 1060
TseI GCWGC 5 cut(s) 596, 671, 839, 933, 983
Tsp45I GTSAC 2 cut(s) 499, 1060
TspDTI ATGAA 1 cut(s) 729
TspGWI ACGGA 1 cut(s) 1128
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 1125
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 2 cut(s) 572, 821
XceI RCATGY 2 cut(s) 956, 1160
ZrmI AGTACT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.