Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019185

Physical Location & Seq

Genomic Coordinates Forward (+)

18983626 .. 18985869

Gene Structure 2244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGATGATGATTCCAAGGATGGTTAAGAACAAAACCCCTGCTCCGGTTCAAATCACGGCGGAGCAGGTTTTGAAGGAGGCGAGAGAGAGAGAGGACAGTCGCATCCTGCGGCCGCCTAAACAGAAGATCACAGATTCGGATGAGCTTGCCGAGTACAGACTCCGACGTCGGAAGGAGTTTGAGGACCAGATCCGCGGCGCAAAAACGAACTCACAAGTTTGGGTGAGGTATGCTGATTGGGAAGAGTCTCAGAAGGATCACGATCGTGCTCGGAGCGTGTGGGAACGAGCTTTGGAAGACGAGAGTTACAGGAACCATACGCTCTGGCTCAAATACGCAGAGTTCGAGATGAGGAACAAATCCGTCAACCATGCGAGGAACGTTTGGGATCGAGCCGTGAAGATTCTACCTCGCGTGGACCAGTTTTGGTATAAGTATATTCACATGGAGGAGATACTTGGTAATATCGACGGAGCTAGAAAGATTTTTGAACGGTGGATGGATTGGTCACCAGATCAACAAGCTTGGCTCTGTTTTATCAAATTCGAACTTAGGTATAACGAAATCGAACGGTCAAGATCGATTTACGAGAGATTTGTGCTTTGCCATCCTAAAGCTTCTTCCTTTATTCGATACGCAAAGTTTGAGATGAAGAACAGTCAAGTTTCGCTTGCGAGGATTGTGTACGAACGCGCCATTGAGATGCTTAAAGACGTCGAAGAAGAAGCTGAGATGATCTTTGTGGCCTTTGCTGAGTTTGAAGAACTATGTAAAGAAGTGGAACGGGCTAGGTTTCTTTACAAGTATGCTCTTGATCATATCCCTAAAGGAAGAGCTGAGGATTTGTACAAGAAGTTTGTGGCGTTTGAGAAGCAGTATGGGAATAAGGAAGGTATTGATGATGCCATTGTTGGCAGGAGAAAGTTACAGTATGAAGGTGAAGTGAGGAAGAACCCTTTGAACTACGATTCTTGGTTCGATTACATTAGCTTAGAGGAGACTTTGGGGGATAAAGATAGGATCAGAGAAGTCTATGAGAGGGCTATTGCTAATGTTCCACTCGCTGAGGAGAAACGATACTGGCAGAGATATATCTACTTGTGGATTGATTATGCACTGTTTGAAGAGATTCTAGCTGAAGACGTGGAGCGTACTCGAGCTGTGTACAGAGAATGCCTCAATCTTATCCCCTCACTCCAAATTCTCTTTTGCCAAGATATGGTTGCTCGCTGCACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT TPR_8

Protein Analysis

413

Amino Acids

50.11

Weight (kDa)

6.23

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	59 - 205	7.5e-17	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf	PF05843	62 - 205	6.2e-08	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	69 - 172	1.7e-15	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	70 - 301	2.9e-20	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	72 - 168	8.8e-09	PRP39 N-terminal HAT repeat
HAT_PRP39_N	PF23240	171 - 296	4.2e-06	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	174 - 276	4.3e-10	PRP39 C-terminal HAT repeat
HAT	PF02184	188 - 216	9.4e-11	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_N	PF23233	309 - 410	2.6e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51110
malus_domestica	MD08G1044800.v1.1 MD08G1045500.v1.1
pyrus_communis	pycom08g03610 pycom08g03630 pycom08g03750 pycom08g03760
rosa_samantha	Rh5BG087000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	165
AatII	GACGTC	2 cut(s)	169, 717
Acc36I	ACCTGC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	1219
AccII	CGCG	3 cut(s)	195, 414, 693
AciI	CCGC	5 cut(s)	59, 109, 113, 193, 195
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	4 cut(s)	184, 264, 396, 1028
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	542, 1200
AcuI	CTGAAG	1 cut(s)	1158
AcyI	GRCGYC	2 cut(s)	166, 714
AfaI	GTAC	5 cut(s)	155, 686, 848, 1153, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	43, 1219
AgsI	TTSAA	6 cut(s)	50, 73, 491, 761, 961, 1124
AjiI	CACGTC	1 cut(s)	1144
AleI	CACNNNNGTG	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	252, 992
AlwI	GGATC	4 cut(s)	184, 264, 396, 1028
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	110, 744
ApeKI	GCWGC	1 cut(s)	1230
ApoI	RAATTY	2 cut(s)	542, 1200
Asp700I	GAANNNNTTC	1 cut(s)	1128
AspLEI	GCGC	2 cut(s)	200, 695
AspS9I	GGNCC	2 cut(s)	184, 418
AsuHPI	GGTGA	3 cut(s)	235, 501, 950
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	1155
AvaII	GGWCC	2 cut(s)	184, 418
BbsI	GAAGAC	2 cut(s)	303, 1146
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	2 cut(s)	837, 1065
BbvI	GCAGC	1 cut(s)	1217
BccI	CCATC	3 cut(s)	13, 493, 615
BceAI	ACGGC	2 cut(s)	72, 380
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	252, 992
BfaI	CTAG	3 cut(s)	477, 789, 1133
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	4 cut(s)	110, 113, 196, 1231
BlsI	GCNGC	4 cut(s)	111, 114, 197, 1232
Bme18I	GGWCC	2 cut(s)	184, 418
BmeT110I	CYCGRG	1 cut(s)	1155
BmgBI	CACGTC	1 cut(s)	1144
BmgT120I	GGNCC	2 cut(s)	184, 418
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	3 cut(s)	111, 693, 892
BpiI	GAAGAC	2 cut(s)	303, 1146
BplI	GAGNNNNNCTC	2 cut(s)	1161, 1193
Bpu10I	CCTNAGC	2 cut(s)	837, 1065
Bpu14I	TTCGAA	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	581
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	2 cut(s)	166, 714
BsaJI	CCNNGG	2 cut(s)	14, 193
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 1219
Bse1I	ACTGG	2 cut(s)	421, 1085
Bse8I	GATNNNNATC	1 cut(s)	261
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	14, 193
BseGI	GGATG	5 cut(s)	24, 102, 145, 504, 607
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	43, 1219
BseMII	CTCAG	5 cut(s)	263, 720, 744, 828, 1056
BseNI	ACTGG	2 cut(s)	421, 1085
BseRI	GAGGAG	3 cut(s)	464, 1010, 1082
BseX3I	CGGCCG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	1217
BsgI	GTGCAG	1 cut(s)	1216
Bsh1236I	CGCG	3 cut(s)	195, 414, 693
Bsh1285I	CGRYCG	2 cut(s)	113, 265
BshFI	GGCC	2 cut(s)	112, 746
BshVI	ATCGAT	1 cut(s)	581
BsiEI	CGRYCG	2 cut(s)	113, 265
BsiHKAI	GWGCWC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	43, 1219
BsmAI	GTCTC	2 cut(s)	252, 992
BsmI	GAATGC	1 cut(s)	1178
BsnI	GGCC	2 cut(s)	112, 746
BsoBI	CYCGRG	1 cut(s)	1155
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp1407I	TGTACA	2 cut(s)	846, 1164
BspACI	CCGC	5 cut(s)	59, 109, 113, 193, 195
BspANI	GGCC	2 cut(s)	112, 746
BspCNI	CTCAG	5 cut(s)	262, 721, 745, 829, 1057
BspDI	ATCGAT	1 cut(s)	581
BspFNI	CGCG	3 cut(s)	195, 414, 693
BspLI	GGNNCC	1 cut(s)	314
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	4 cut(s)	184, 264, 396, 1028
BspQI	GCTCTTC	1 cut(s)	826
BspT104I	TTCGAA	1 cut(s)	546
BsrGI	TGTACA	2 cut(s)	846, 1164
BsrI	ACTGG	2 cut(s)	421, 1085
BssECI	CCNNGG	2 cut(s)	14, 193
BssNI	GRCGYC	2 cut(s)	166, 714
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	7 cut(s)	98, 495, 573, 659, 930, 1119, 1237
Bst6I	CTCTTC	3 cut(s)	237, 826, 1119
BstACI	GRCGYC	2 cut(s)	166, 714
BstAUI	TGTACA	2 cut(s)	846, 1164
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	147, 672, 1228
BstDEI	CTNAG	7 cut(s)	249, 551, 729, 753, 837, 991, 1065
BstDSI	CCRYGG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	507
BstF5I	GGATG	5 cut(s)	24, 102, 145, 504, 607
BstFNI	CGCG	3 cut(s)	195, 414, 693
BstHHI	GCGC	2 cut(s)	200, 695
BstMAI	GTCTC	2 cut(s)	252, 992
BstMCI	CGRYCG	2 cut(s)	113, 265
BstPI	GGTNACC	1 cut(s)	507
BstUI	CGCG	3 cut(s)	195, 414, 693
BstV1I	GCAGC	1 cut(s)	1217
BstV2I	GAAGAC	2 cut(s)	303, 1146
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BstZI	CGGCCG	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	112, 746
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	1144
BtsCI	GGATG	5 cut(s)	24, 102, 145, 504, 607
BtsIMutI	CAGTG	1 cut(s)	1115
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	147, 672, 1228
CciNI	GCGGCCGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	200, 695
Cfr13I	GGNCC	2 cut(s)	184, 418
Cfr42I	CCGCGG	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	5 cut(s)	154, 685, 847, 1152, 1165
CviAII	CATG	2 cut(s)	371, 445
CviQI	GTAC	5 cut(s)	154, 685, 847, 1152, 1165
DdeI	CTNAG	7 cut(s)	249, 551, 729, 753, 837, 991, 1065
DrdI	GACNNNNNNGTC	1 cut(s)	165
DseDI	GACNNNNNNGTC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	110
EagI	CGGCCG	1 cut(s)	110
Eam1104I	CTCTTC	3 cut(s)	237, 826, 1119
EarI	CTCTTC	3 cut(s)	237, 826, 1119
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	184, 418
Eco52I	CGGCCG	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	1158
Eco88I	CYCGRG	1 cut(s)	1155
Eco91I	GGTNACC	1 cut(s)	507
EcoO65I	GGTNACC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	374, 448
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FatI	CATG	2 cut(s)	370, 444
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	4 cut(s)	110, 113, 196, 1231
FokI	GGATG	5 cut(s)	31, 89, 152, 511, 594
Fsp4HI	GCNGC	4 cut(s)	110, 113, 196, 1231
FspBI	CTAG	3 cut(s)	477, 789, 1133
GlaI	GCGC	2 cut(s)	199, 694
GluI	GCNGC	4 cut(s)	110, 113, 196, 1231
HaeIII	GGCC	2 cut(s)	112, 746
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	2 cut(s)	200, 695
Hin1I	GRCGYC	2 cut(s)	166, 714
Hin1II	CATG	2 cut(s)	374, 448
Hin6I	GCGC	2 cut(s)	198, 693
HinP1I	GCGC	2 cut(s)	198, 693
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	522, 615
HinfI	GANTC	7 cut(s)	10, 134, 159, 245, 403, 968, 1129
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	235, 501, 950
Hpy166II	GTNNAC	4 cut(s)	367, 418, 685, 1165
Hpy188I	TCNGA	6 cut(s)	139, 164, 171, 252, 273, 1025
Hpy188III	TCNNGA	4 cut(s)	260, 346, 576, 812
Hpy8I	GTNNAC	4 cut(s)	367, 418, 685, 1165
Hpy99I	CGWCG	4 cut(s)	168, 171, 473, 719
HpyAV	CCTTC	5 cut(s)	67, 166, 247, 884, 929
HpyCH4III	ACNGT	7 cut(s)	98, 495, 573, 659, 930, 1119, 1237
HpyCH4IV	ACGT	4 cut(s)	166, 381, 714, 1143
HpyCH4V	TGCA	2 cut(s)	1115, 1233
HpyF3I	CTNAG	7 cut(s)	249, 551, 729, 753, 837, 991, 1065
HpySE526I	ACGT	4 cut(s)	166, 381, 714, 1143
Hsp92I	GRCGYC	2 cut(s)	166, 714
Hsp92II	CATG	2 cut(s)	374, 448
HspAI	GCGC	2 cut(s)	198, 693
Ksp22I	TGATCA	1 cut(s)	814
KspI	CCGCGG	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	826
LmnI	GCTCC	5 cut(s)	46, 61, 273, 473, 1147
Lsp1109I	GCAGC	1 cut(s)	1217
LweI	GCATC	3 cut(s)	111, 693, 892
MaeI	CTAG	3 cut(s)	477, 789, 1133
MaeII	ACGT	4 cut(s)	166, 381, 714, 1143
MaeIII	GTNAC	3 cut(s)	305, 507, 924
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	2 cut(s)	542, 1200
MlyI	GAGTC	2 cut(s)	153, 254
MmeI	TCCRAC	2 cut(s)	149, 187
MroXI	GAANNNNTTC	1 cut(s)	1128
MseI	TTAA	2 cut(s)	24, 708
MslI	CAYNNNNRTG	2 cut(s)	264, 701
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	1178
MvnI	CGCG	3 cut(s)	195, 414, 693
NlaIII	CATG	2 cut(s)	374, 448
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	507
NotI	GCGGCCGC	1 cut(s)	110
NspV	TTCGAA	1 cut(s)	546
OliI	CACNNNNGTG	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	1155
PciSI	GCTCTTC	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	1 cut(s)	1178
PdmI	GAANNNNTTC	1 cut(s)	1128
PfeI	GAWTC	5 cut(s)	10, 134, 403, 968, 1129
PflMI	CCANNNNNTGG	1 cut(s)	1219
PkrI	GCNGC	4 cut(s)	111, 114, 197, 1232
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	2 cut(s)	153, 253
PpsI	GAGTC	2 cut(s)	153, 253
Psp1406I	AACGTT	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	184, 418
PspXI	VCTCGAGB	1 cut(s)	1155
PsuI	RGATCY	1 cut(s)	189
PvuI	CGATCG	1 cut(s)	265
RsaI	GTAC	5 cut(s)	155, 686, 848, 1153, 1166
RsaNI	GTAC	5 cut(s)	154, 685, 847, 1152, 1165
RseI	CAYNNNNRTG	2 cut(s)	264, 701
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	826
SaqAI	TTAA	2 cut(s)	24, 708
SatI	GCNGC	4 cut(s)	110, 113, 196, 1231
Sau96I	GGNCC	2 cut(s)	184, 418
SchI	GAGTC	2 cut(s)	153, 254
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	3 cut(s)	111, 693, 892
Sfr274I	CTCGAG	1 cut(s)	1155
Sfr303I	CCGCGG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	546
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	184, 418
SlaI	CTCGAG	1 cut(s)	1155
SmiMI	CAYNNNNRTG	2 cut(s)	264, 701
SmlI	CTYRAG	1 cut(s)	1155
SmoI	CTYRAG	1 cut(s)	1155
Sse9I	AATT	2 cut(s)	542, 1200
SsiI	CCGC	5 cut(s)	59, 109, 113, 193, 195
SspMI	CTAG	3 cut(s)	477, 789, 1133
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	7 cut(s)	98, 495, 573, 659, 930, 1119, 1237
TaiI	ACGT	4 cut(s)	169, 384, 717, 1146
TasI	AATT	2 cut(s)	542, 1200
TatI	WGTACW	3 cut(s)	153, 846, 1164
TauI	GCSGC	3 cut(s)	112, 115, 198
TfiI	GAWTC	5 cut(s)	10, 134, 403, 968, 1129
Tru1I	TTAA	2 cut(s)	24, 708
Tru9I	TTAA	2 cut(s)	24, 708
TscAI	CASTG	1 cut(s)	1122
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	1 cut(s)	1230
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	2 cut(s)	665, 948
TspGWI	ACGGA	2 cut(s)	352, 486
TspRI	CASTG	1 cut(s)	1122
Van91I	CCANNNNNTGG	1 cut(s)	1219
VpaK11BI	GGWCC	2 cut(s)	184, 418
XapI	RAATTY	2 cut(s)	542, 1200
XhoI	CTCGAG	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	1128
XspI	CTAG	3 cut(s)	477, 789, 1133
ZraI	GACGTC	2 cut(s)	167, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.