AT3G52075

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
19313247 .. 19313420
174 bp
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UTR
Exon/CDS
Intron
AT3G52075.1

Sequence Viewer

Length: 174 bp
ATGGTTAGGAATCTCTCTTTCTTTCTAACAATTACGGTCAAAGTTTTGGTTTTCAAGGCATACTCAGCGACTCTGCCCGAGGCTCTTGCATCTCCTTTCGGCTCTAAAACAAAGAGCCTTAACTGGTTGATAGTGTTATCGCAATGGTTGGTTTGCCTTTTCTGCCGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

9.9

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52075
pyrus_communis pycom07g01200 pycom07g01240 pycom07g01270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BmeT110I CYCGRG 1 cut(s) 77
BmsI GCATC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 65, 162
CviJI RGCY 3 cut(s) 83, 102, 117
CviKI_1 RGCY 3 cut(s) 83, 102, 117
DdeI CTNAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 77
FaiI YATR 1 cut(s) 61
HapII CCGG 1 cut(s) 166
HinfI GANTC 2 cut(s) 10, 70
HpaII CCGG 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 162
HpyF3I CTNAG 1 cut(s) 64
LpnPI CCDG 1 cut(s) 109
LweI GCATC 1 cut(s) 98
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 1 cut(s) 73
MseI TTAA 2 cut(s) 120, 172
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 65, 162
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 120, 172
SchI GAGTC 1 cut(s) 64
SfaNI GCATC 1 cut(s) 98
SgeI CNNG 5 cut(s) 67, 89, 91, 98, 136
Sse9I AATT 1 cut(s) 30
TaaI ACNGT 1 cut(s) 37
TasI AATT 1 cut(s) 30
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 120, 172
Tru9I TTAA 2 cut(s) 120, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.