Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0021894

Physical Location & Seq

Genomic Coordinates Forward (+)

964698 .. 965435

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAATGGTTACGCATCATGTTCCAGTTGTTTGGGAAGTACAGGGACATGTCATTGGCTGTTAAAAATCCATGCCACCTTCACATGGCAGCGTCTTTTATAAAGCTCAAGCGTTATGAAGAAGCCATTGGACAATCCAGTATTTCGAATTTTAGTTCCTACGCGACTCATGATCTCTTTGTAAGGGCACGCAAATTTGCGCAGACAGAGCTTGGGCAGACAGATGTTGCGCGGGAAGACTTTCTAAGGGCACGCAAATTTGCACCTCAATACAAAGCTATTGCAAGAGAGTTACGTTTGCTTGCTGAACACAACAAGGCTGTTTATCAGAAACAAAAAGAAATCTGCCAGGGAATTTTCGGACCAACCCCAGAACCTAAACCCAAACGGGATAATTGGTTGATCATCTTTTGGCACTGGTTGTTGTCATTGTTCTGTCGTCTCCTTAGGCGTGAAAGGCATAAAGATGAGGAGTCAAAGATCGTAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

165

Amino Acids

19.55

Weight (kDa)

9.93

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52075
pyrus_communis	pycom07g01200 pycom07g01240 pycom07g01270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
Acc16I	TGCGCA	1 cut(s)	201
AccII	CGCG	2 cut(s)	164, 232
AciI	CCGC	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	148, 194, 257, 354
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	106, 211, 278, 489
AluI	AGCT	4 cut(s)	106, 211, 278, 489
Alw26I	GTCTC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	4 cut(s)	148, 194, 257, 354
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	202, 232
AspS9I	GGNCC	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	190, 253
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	446
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	25, 138, 422
Bse21I	CCTNAGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	3 cut(s)	25, 138, 422
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	2 cut(s)	190, 253
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	164, 232
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	190, 253
Bsp143I	GATC	3 cut(s)	172, 402, 480
BspACI	CCGC	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	164, 232
BspHI	TCATGA	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	25, 138, 422
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	172, 402, 480
Bst2UI	CCWGG	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	190, 253, 303
BstDEI	CTNAG	2 cut(s)	245, 446
BstFNI	CGCG	2 cut(s)	164, 232
BstHHI	GCGC	2 cut(s)	202, 232
BstKTI	GATC	3 cut(s)	175, 405, 483
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	172, 402, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 457
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	2 cut(s)	190, 253
BstUI	CGCG	2 cut(s)	164, 232
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	190, 253, 303
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	2 cut(s)	202, 232
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	5 cut(s)	19, 49, 72, 85, 170
CviJI	RGCY	7 cut(s)	59, 106, 125, 211, 278, 320, 489
CviKI_1	RGCY	7 cut(s)	59, 106, 125, 211, 278, 320, 489
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	245, 446
DpnI	GATC	3 cut(s)	174, 404, 482
DpnII	GATC	3 cut(s)	172, 402, 480
Eco47I	GGWCC	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	5 cut(s)	22, 52, 75, 88, 173
FaiI	YATR	8 cut(s)	20, 50, 73, 86, 101, 117, 171, 462
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	18, 48, 71, 84, 169
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	2 cut(s)	201, 231
GluI	GCNGC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	202, 232
Hin1II	CATG	5 cut(s)	22, 52, 75, 88, 173
Hin6I	GCGC	2 cut(s)	200, 230
HinP1I	GCGC	2 cut(s)	200, 230
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	2 cut(s)	166, 473
Hpy188I	TCNGA	2 cut(s)	330, 362
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	263, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 457
HpyF3I	CTNAG	2 cut(s)	245, 446
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	5 cut(s)	22, 52, 75, 88, 173
HspAI	GCGC	2 cut(s)	200, 230
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	172, 402, 480
LpnPI	CCDG	7 cut(s)	28, 38, 151, 335, 362, 384, 403
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	9, 291
MalI	GATC	3 cut(s)	174, 404, 482
MboI	GATC	3 cut(s)	172, 402, 480
MboII	GAAGA	2 cut(s)	131, 248
MhlI	GDGCHC	2 cut(s)	190, 253
MluCI	AATT	5 cut(s)	148, 194, 257, 354, 394
MlyI	GAGTC	2 cut(s)	160, 482
MnlI	CCTC	2 cut(s)	276, 463
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	164, 232
MwoI	GCNNNNNNNGC	2 cut(s)	208, 457
NdeII	GATC	3 cut(s)	172, 402, 480
NlaIII	CATG	5 cut(s)	22, 52, 75, 88, 173
NsbI	TGCGCA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	52
NspV	TTCGAA	1 cut(s)	146
PagI	TCATGA	1 cut(s)	169
PciI	ACATGT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	160, 481
PpsI	GAGTC	2 cut(s)	160, 481
PscI	ACATGT	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	172, 402, 480
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	160, 482
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	190, 253
SetI	ASST	8 cut(s)	81, 108, 213, 268, 280, 298, 379, 491
SfaNI	GCATC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	148, 194, 257, 354, 394
SsiI	CCGC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	348
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	148, 194, 257, 354, 394
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	17, 132
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	4 cut(s)	148, 194, 257, 354
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.