Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0021894

Physical Location & Seq

Genomic Coordinates Forward (+)

949406 .. 950483

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCATTGACTGAGGAGGCAATGCACCAGTATGAAATGGTTACGCATCATGTTCCAGTTTTTGGGAAGTACAGGGACATGTCATTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCGTCTTTTATAAAGCTCAAGCGTTATGAAGAAGCCATTGGACAATGCAGTATTGTACTGGCAGAGGATGAAAATGACGTCAAGGCACTATTTAGGCGGGCAAAAGCCAAAACGGAGCTTGGGCAGACAGATGTTGCGCGGGAAGACTTTCTAAGGGCACGCAAATTTGCACCTCAATACAAAGCTATTGCAAGAGAGTTACGTTTGCTTGCTGAACACGACAAGGCTGTTTATCAGAAACAAAAAGAAATCTGCCAGGGAATTTTCGGACCAACCCCAGAACCTAAACCCAAACGGGTTAATTGGTTGGTCATCTTTTGGCACTGGTTGTTGTCATTGTTCTGTCGTCTCCTTAGGCGCGAAAGGCATAAAGATGAGTCAAAGATCCTAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

173

Amino Acids

20.23

Weight (kDa)

9.39

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52075
pyrus_communis	pycom07g01200 pycom07g01240 pycom07g01270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AatII	GACGTC	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	2 cut(s)	259, 480
AciI	CCGC	2 cut(s)	217, 259
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	284, 381
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	71, 177
AfiI	CCNNNNNNNGG	2 cut(s)	62, 115
AflIII	ACRYGT	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	136, 238, 305, 513
AluI	AGCT	4 cut(s)	136, 238, 305, 513
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	284, 381
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	259, 480
AspS9I	GGNCC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 115
Bse1I	ACTGG	4 cut(s)	28, 56, 183, 449
Bse21I	CCTNAGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	62, 115
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	4 cut(s)	28, 56, 183, 449
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	259, 480
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	62, 115
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	504
BspACI	CCGC	2 cut(s)	217, 259
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	2 cut(s)	259, 480
BspPI	GGATC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	28, 56, 183, 449
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	504
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	219, 280, 330
BstDEI	CTNAG	4 cut(s)	12, 272, 473, 509
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	259, 480
BstHHI	GCGC	2 cut(s)	259, 480
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	2 cut(s)	259, 480
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	3 cut(s)	219, 280, 330
CfoI	GCGC	2 cut(s)	259, 480
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	70, 176
CviAII	CATG	4 cut(s)	50, 79, 102, 115
CviJI	RGCY	8 cut(s)	89, 136, 155, 227, 238, 305, 347, 513
CviKI_1	RGCY	8 cut(s)	89, 136, 155, 227, 238, 305, 347, 513
CviQI	GTAC	2 cut(s)	70, 176
DdeI	CTNAG	4 cut(s)	12, 272, 473, 509
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	53, 82, 105, 118
FaiI	YATR	8 cut(s)	33, 51, 80, 103, 116, 131, 147, 489
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	49, 78, 101, 114
FauI	CCCGC	2 cut(s)	210, 252
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	2 cut(s)	258, 479
GluI	GCNGC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	259, 480
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	53, 82, 105, 118
Hin6I	GCGC	2 cut(s)	257, 478
HinP1I	GCGC	2 cut(s)	257, 478
HindIII	AAGCTT	1 cut(s)	511
HinfI	GANTC	1 cut(s)	497
Hpy188I	TCNGA	2 cut(s)	357, 389
HpyCH4IV	ACGT	2 cut(s)	198, 322
HpyCH4V	TGCA	4 cut(s)	25, 168, 290, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	4 cut(s)	12, 272, 473, 509
HpySE526I	ACGT	2 cut(s)	198, 322
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	53, 82, 105, 118
HspAI	GCGC	2 cut(s)	257, 478
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	41, 58, 69, 164, 362, 389, 411, 430
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	2 cut(s)	198, 322
MaeIII	GTNAC	2 cut(s)	40, 318
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	2 cut(s)	161, 275
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	3 cut(s)	284, 381, 421
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	7, 10, 178, 303
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	3 cut(s)	93, 111, 420
MslI	CAYNNNNRTG	2 cut(s)	30, 492
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	2 cut(s)	259, 480
MwoI	GCNNNNNNNGC	1 cut(s)	484
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	4 cut(s)	53, 82, 105, 118
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	504
RsaI	GTAC	2 cut(s)	71, 177
RsaNI	GTAC	2 cut(s)	70, 176
RseI	CAYNNNNRTG	2 cut(s)	30, 492
SaqAI	TTAA	3 cut(s)	93, 111, 420
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	9 cut(s)	111, 138, 201, 240, 295, 307, 325, 406, 515
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	30, 492
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	284, 381, 421
SsiI	CCGC	2 cut(s)	217, 259
StyD4I	CCNGG	1 cut(s)	375
TaiI	ACGT	2 cut(s)	201, 325
TasI	AATT	3 cut(s)	284, 381, 421
TatI	WGTACW	2 cut(s)	69, 175
Tru1I	TTAA	3 cut(s)	93, 111, 420
Tru9I	TTAA	3 cut(s)	93, 111, 420
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	48, 162, 204
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	284, 381
XceI	RCATGY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	267
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.