Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013025

Physical Location & Seq

Genomic Coordinates Forward (+)

19371135 .. 19372687

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTGAAGAAGCTCAAGTAGATCGTTCTAATGGCTCTGATTCATCATCTCCTCCCATAAAGTTACCTCCTTTCATCACCAACCTATTCGCCTTTCTTCAACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCTACCGGCGAGAAGGAACCTCTGAAATCGACCTACGAGACTGTCACTTTCCCTTACAATCCACCCAAAAGCGCAGAGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCCAACTCTGTCATCCTTTGGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATGAAAGGAACGAGAGAAGTGACAAAAAGGAGGCGACGGGTGATGATGATCAGAAAGATGATGATGAGGATGATCAATCATCTGATGGGCATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

4.52

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52230
fragaria_vesca	FvH4_7g06450 FvH4_7g06450
prunus_persica	Prupe.2G091100_v2.0.a1
pyrus_communis	pycom02g21010 pycom07g05590
rosa_chinensis	RchiOBHm_Chr1g0334731
rosa_laevigata	RLG00000029426
rosa_multiflora	Rmu_sc0000574.1_g000003 Rmu_sc0006031.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316630
rosa_rugosa	Rorug01G0115400 Rorug01G0115500
rosa_samantha	Rh1AG140400 Rh1BG107600 Rh1CG132400 Rh1DG144500
rosa_wichuraiana	Rw1G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	274
AcuI	CTGAAG	2 cut(s)	27, 335
AfiI	CCNNNNNNNGG	3 cut(s)	251, 283, 319
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	14, 249
AluI	AGCT	2 cut(s)	14, 249
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	70, 389
BanII	GRGCYC	1 cut(s)	246
BccI	CCATC	2 cut(s)	327, 416
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	2 cut(s)	385, 409
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 283, 319
Bse118I	RCCGGY	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	273, 412
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	251, 283, 319
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	42, 102
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	3 cut(s)	251, 283, 319
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	22, 385, 409
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	22, 385, 409
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	105, 240
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	273, 412
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	25, 388, 412
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	22, 385, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	273, 412
BveI	ACCTGC	1 cut(s)	274
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	321
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	9 cut(s)	5, 14, 36, 109, 223, 239, 244, 249, 323
CviKI_1	RGCY	9 cut(s)	5, 14, 36, 109, 223, 239, 244, 249, 323
DdeI	CTNAG	2 cut(s)	105, 240
DpnI	GATC	3 cut(s)	24, 387, 411
DpnII	GATC	3 cut(s)	22, 385, 409
Eco24I	GRGCYC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	27, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	431
FaiI	YATR	4 cut(s)	59, 289, 291, 429
FatI	CATG	1 cut(s)	427
FbaI	TGATCA	2 cut(s)	385, 409
FokI	GGATG	2 cut(s)	260, 419
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	436
GlaI	GCGC	1 cut(s)	217
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	70, 389
Hpy188I	TCNGA	4 cut(s)	40, 168, 390, 421
Hpy188III	TCNNGA	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	105, 240
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	2 cut(s)	385, 409
Kzo9I	GATC	3 cut(s)	22, 385, 409
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	129, 163, 237, 241, 259, 269, 310, 326, 337
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	63, 187, 356
MalI	GATC	3 cut(s)	24, 387, 411
MboI	GATC	3 cut(s)	22, 385, 409
MboII	GAAGA	2 cut(s)	20, 89
MhlI	GDGCHC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	9 cut(s)	63, 78, 120, 123, 174, 229, 293, 361, 397
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	22, 385, 409
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	187, 356
PfeI	GAWTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	321
Sau3AI	GATC	3 cut(s)	22, 385, 409
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	9 cut(s)	16, 70, 87, 106, 148, 166, 179, 251, 288
SfaNI	GCATC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	187, 356
Tsp45I	GTSAC	2 cut(s)	187, 356
TspDTI	ATGAA	3 cut(s)	33, 64, 354
XagI	CCTNNNNNAGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.