Rh1CG132400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
29060020 .. 29063226
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG132400.1

Sequence Viewer

Length: 327 bp
ATGGCCGAAAACACTGAAATTGTAAGCAGAGATGAAGGCCCTAAAAAACCCATCAACTTATTCGCCCTCTTTCCTAAGTTTAAGCTTCAATTTCCATTCTGGAAGCAGCAAGAACAAAAACCAGGGGTGGTGCCTGTTGAAGATGAAGCTACCAACACTGGCACTCAGAAACCGGTCACTGTGAGGTTCCCAAAAGCCCAACCCGTTGTTCCTACTGTGGCTGCTGAGGTTGAAGAACCCGTGACCAAGACTTCCAATCCCATTATAGTCTGGCAGGATGTGATGAATTACTCCACGAGACCAGAAATGACCTGCGCAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

5.17

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013025)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 3
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 3 cut(s) 89, 140, 233
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 2 cut(s) 85, 149
AluI AGCT 2 cut(s) 85, 149
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 2 cut(s) 3, 37
ApeKI GCWGC 2 cut(s) 106, 221
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 130
BauI CACGAG 1 cut(s) 295
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 118, 208
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 2 cut(s) 107, 222
BlsI GCNGC 2 cut(s) 108, 223
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 132, 188
BmrFI CCNGG 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 179, 216
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 118, 208
BshFI GGCC 2 cut(s) 5, 39
BshNI GGYRCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 2 cut(s) 5, 39
Bso31I GGTCTC 1 cut(s) 292
BspANI GGCC 2 cut(s) 5, 39
BspCNI CTCAG 2 cut(s) 178, 217
BspLI GGNNCC 2 cut(s) 132, 188
BspMI ACCTGC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 122
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 181, 217
BstDEI CTNAG 3 cut(s) 75, 165, 225
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 118, 208
BsuRI GGCC 2 cut(s) 5, 39
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 12, 156, 177
BveI ACCTGC 1 cut(s) 320
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 38
CspAI ACCGGT 1 cut(s) 172
CviJI RGCY 6 cut(s) 5, 39, 85, 149, 197, 221
CviKI_1 RGCY 6 cut(s) 5, 39, 85, 149, 197, 221
DdeI CTNAG 3 cut(s) 75, 165, 225
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 121
FaiI YATR 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 107, 222
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 107, 222
FspI TGCGCA 1 cut(s) 316
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 107, 222
HaeIII GGCC 2 cut(s) 5, 39
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 317
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 83
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 181, 217
HpyF3I CTNAG 3 cut(s) 75, 165, 225
HspAI GCGC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 85, 108, 135, 144, 147, 186, 256, 260, 315
Lsp1109I GCAGC 2 cut(s) 118, 208
MaeIII GTNAC 2 cut(s) 175, 241
MboII GAAGA 2 cut(s) 152, 245
MluCI AATT 3 cut(s) 18, 89, 286
MnlI CCTC 3 cut(s) 77, 177, 220
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NlaIV GGNNCC 2 cut(s) 132, 188
NmuCI GTSAC 2 cut(s) 175, 241
NsbI TGCGCA 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 2 cut(s) 108, 223
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 132, 188
PspPI GGNCC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 107, 222
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 123
SetI ASST 5 cut(s) 87, 151, 188, 231, 314
Sse9I AATT 3 cut(s) 18, 89, 286
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 181, 217
TasI AATT 3 cut(s) 18, 89, 286
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 3 cut(s) 19, 163, 184
TseFI GTSAC 2 cut(s) 175, 241
TseI GCWGC 2 cut(s) 106, 221
Tsp45I GTSAC 2 cut(s) 175, 241
TspDTI ATGAA 3 cut(s) 48, 159, 299
TspRI CASTG 3 cut(s) 19, 163, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.