AT3G54840

Ras-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
20318412 .. 20321106
2695 bp
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UTR
Exon/CDS
Intron
AT3G54840.2

Sequence Viewer

Length: 609 bp
ATGGGATGTGCTTCTTCTCTTCCAGATAGGAACTCTGGAACTTTAAGTGGTCTTAGCAATTCAGAGAATGCTGTTCCAGCTGATGCCAAAAATCTACGTGTGAAGTTAGTTCTATTAGGAGACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCTACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACTATAGCATTGCAAGACTCTACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAGGAGAGGTATTCTGCTCTTGCACCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGCCCTGAATCGTTCAAGAAAGCACAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATTGTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGA

Protein Analysis

202

Amino Acids

21.89

Weight (kDa)

6.16

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 31 - 188 4.1e-10 ADP-ribosylation factor family
Ras PF00071 35 - 189 3.4e-58 Ras family
Roc PF08477 35 - 150 2e-35 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54840 AT3G54840 AT3G54840
fragaria_vesca FvH4_7g18850
malus_domestica MD01G1103700.v1.1 MD07G1170500.v1.1
prunus_persica Prupe.2G209500_v2.0.a1
pyrus_communis pycom01g13030 pycom07g16450
rosa_chinensis RchiOBHm_Chr1g0362731
rosa_laevigata RLG00000027627
rosa_multiflora Rmu_sc0000046.1_g000017
rosa_roxburghii Rroxscaffold_4G00293830
rosa_rugosa Rorug01G0300900
rosa_samantha Rh1BG273200 Rh1CG290200 Rh1DG303800
rosa_wichuraiana Rw1G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 2 cut(s) 162, 471
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 2 cut(s) 257, 367
AluBI AGCT 4 cut(s) 80, 320, 446, 493
AluI AGCT 4 cut(s) 80, 320, 446, 493
Alw26I GTCTC 2 cut(s) 114, 518
BccI CCATC 1 cut(s) 476
BceAI ACGGC 1 cut(s) 523
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 114, 518
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 571, 603
BpmI CTGGAG 1 cut(s) 342
BsaAI YACGTR 2 cut(s) 98, 164
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 313
BsaXI ACNNNNNCTCC 4 cut(s) 309, 315, 339, 345
Bse3DI GCAATG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 11, 487
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 114, 518
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 527
Bst4CI ACNGT 5 cut(s) 196, 247, 314, 378, 561
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 527
BstBAI YACGTR 2 cut(s) 98, 164
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 53, 186, 477
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 11, 487
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 114, 518
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 77, 326, 539
BstNSI RCATGY 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 11, 487
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 495
CciI TCATGA 1 cut(s) 605
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 161, 470
CviAII CATG 4 cut(s) 404, 455, 511, 606
CviQI GTAC 2 cut(s) 161, 470
DdeI CTNAG 3 cut(s) 53, 186, 477
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 4 cut(s) 407, 458, 514, 609
FaqI GGGAC 1 cut(s) 199
FatI CATG 4 cut(s) 403, 454, 510, 605
FokI GGATG 2 cut(s) 18, 494
GsuI CTGGAG 1 cut(s) 342
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 4 cut(s) 407, 458, 514, 609
HinfI GANTC 3 cut(s) 122, 236, 359
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 4 cut(s) 23, 36, 367, 606
HpyAV CCTTC 2 cut(s) 161, 609
HpyCH4III ACNGT 5 cut(s) 196, 247, 314, 378, 561
HpyCH4IV ACGT 3 cut(s) 97, 163, 527
HpyCH4V TGCA 4 cut(s) 232, 299, 397, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 326, 539
HpyF3I CTNAG 3 cut(s) 53, 186, 477
HpySE526I ACGT 3 cut(s) 97, 163, 527
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 4 cut(s) 407, 458, 514, 609
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 4 cut(s) 200, 317, 490, 601
LweI GCATC 1 cut(s) 73
MaeII ACGT 3 cut(s) 97, 163, 527
MaeIII GTNAC 2 cut(s) 190, 437
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 4 cut(s) 6, 11, 508, 514
MluCI AATT 2 cut(s) 58, 570
MlyI GAGTC 2 cut(s) 116, 230
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 6 cut(s) 214, 276, 472, 559, 573, 597
MseI TTAA 2 cut(s) 44, 387
MspA1I CMGCKG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 77, 326, 539
NdeII GATC 1 cut(s) 448
NlaIII CATG 4 cut(s) 407, 458, 514, 609
NlaIV GGNNCC 1 cut(s) 202
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 605
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 359
PleI GAGTC 2 cut(s) 116, 230
PpsI GAGTC 2 cut(s) 116, 230
Ppu21I YACGTR 2 cut(s) 98, 164
PspN4I GGNNCC 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 162, 471
RsaNI GTAC 2 cut(s) 161, 470
SaqAI TTAA 2 cut(s) 44, 387
Sau3AI GATC 1 cut(s) 448
SchI GAGTC 2 cut(s) 116, 230
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 58, 570
TaaI ACNGT 5 cut(s) 196, 247, 314, 378, 561
TaiI ACGT 3 cut(s) 100, 166, 530
TaqI TCGA 1 cut(s) 154
TasI AATT 2 cut(s) 58, 570
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 44, 387
Tru9I TTAA 2 cut(s) 44, 387
TscAI CASTG 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 471, 508
TspRI CASTG 1 cut(s) 252
XceI RCATGY 1 cut(s) 514
ZraI GACGTC 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.