Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013100

Physical Location & Seq

Genomic Coordinates Reverse (-)

54344077 .. 54347256

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTTGCTCCTCCTCCCTTCCAGATAGAGGTTCTGGGCGGTTGGTTGGGCCGAATGTGGAAAACGGTGGAGCTGCAGACGCCAAAAATTTACGCGTGAAGCTAGTTTTGTTGGGTGATTCTGGTGTTGGTAAGAGCTGCATAGTTCTTCGTTTTGTTCGTGGTCAGTTTGATCCCACATCCAAGGTGACTGTTGGAGCCTCATTCTTGTCTCAGACGATAGCTTTGCAAGATTCTACAACAGTTAAATTTGAGATATGGGACACTGCTGGCCAAGAAAGGTACGCTGCATTGGCCCCCCTTTATTATCGAGGTGCAGCAGTGGCAGTCATTGTATATGATATCACAAGTCCAGAGTCTTTCAACAAAGCACAGTATTGGGTCAAGGAGCTGCAAAAACATGGGACCCCTGATATTGTCTTGGCCTTGGTTGGTAACAAAGCTGATCTTCATGAGAAACGTGAAGTTTCTGTTCAAGATGGCATGGGCTATGCAGAAAAGAATGGGATGTTCTTTATCGAGACATCTGCAAAGACAGCAGATAATATTAATCTGCTGTTTGAGGAAATAGCCAAGCGTCTACCCCGTCCGGCTTTATCATCATCCTCATCAATACAGAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

22.44

Weight (kDa)

7.73

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	30 - 189	4.3e-10	ADP-ribosylation factor family
Ras	PF00071	34 - 194	1.1e-57	Ras family
Roc	PF08477	34 - 149	1.2e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54840 AT3G54840 AT3G54840
fragaria_vesca	FvH4_7g18850
malus_domestica	MD01G1103700.v1.1 MD07G1170500.v1.1
prunus_persica	Prupe.2G209500_v2.0.a1
pyrus_communis	pycom01g13030 pycom07g16450
rosa_chinensis	RchiOBHm_Chr1g0362731
rosa_laevigata	RLG00000027627
rosa_multiflora	Rmu_sc0000046.1_g000017
rosa_roxburghii	Rroxscaffold_4G00293830
rosa_rugosa	Rorug01G0300900
rosa_samantha	Rh1BG273200 Rh1CG290200 Rh1DG303800
rosa_wichuraiana	Rw1G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	580
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	88, 248
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	364, 476
AluBI	AGCT	6 cut(s)	74, 103, 138, 224, 391, 443
AluI	AGCT	6 cut(s)	74, 103, 138, 224, 391, 443
Alw26I	GTCTC	2 cut(s)	216, 515
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	4 cut(s)	50, 271, 294, 423
ApeKI	GCWGC	5 cut(s)	74, 138, 287, 317, 391
ApoI	RAATTY	2 cut(s)	88, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	549
AspS9I	GGNCC	3 cut(s)	50, 295, 405
AsuHPI	GGTGA	2 cut(s)	128, 199
AvaII	GGWCC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	61, 125, 274, 329, 378
BccI	CCATC	1 cut(s)	473
BcgI	CGANNNNNNTGC	4 cut(s)	208, 242, 509, 543
BcoDI	GTCTC	2 cut(s)	216, 515
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	5 cut(s)	75, 139, 288, 318, 392
BlsI	GCNGC	5 cut(s)	76, 140, 289, 319, 393
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	50, 295, 405
BmiI	GGNNCC	4 cut(s)	199, 297, 406, 407
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	183, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	183, 426
BseGI	GGATG	3 cut(s)	179, 513, 602
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	5 cut(s)	61, 125, 274, 329, 378
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	52, 273, 296, 425
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	275, 418
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	216, 515
BsmFI	GGGAC	2 cut(s)	275, 418
BsnI	GGCC	4 cut(s)	52, 273, 296, 425
Bsp143I	GATC	2 cut(s)	172, 445
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	52, 273, 296, 425
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	4 cut(s)	199, 297, 406, 407
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	183, 426
BssMI	GATC	2 cut(s)	172, 445
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	183, 426
Bst4CI	ACNGT	4 cut(s)	68, 193, 244, 375
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	179, 513, 602
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	175, 448
BstMAI	GTCTC	2 cut(s)	216, 515
BstMBI	GATC	2 cut(s)	172, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	5 cut(s)	61, 125, 274, 329, 378
BsuRI	GGCC	4 cut(s)	52, 273, 296, 425
BtsCI	GGATG	3 cut(s)	179, 513, 602
BtsI	GCAGTG	2 cut(s)	264, 327
BtsIMutI	CAGTG	2 cut(s)	264, 327
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	50, 295, 405
CseI	GACGC	2 cut(s)	89, 566
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	4 cut(s)	401, 452, 484, 624
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	174, 447
DpnII	GATC	2 cut(s)	172, 445
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	183, 426
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	183, 426
ErhI	CCWWGG	2 cut(s)	183, 426
FaeI	CATG	4 cut(s)	404, 455, 487, 627
FaiI	YATR	9 cut(s)	143, 259, 337, 339, 402, 453, 485, 492, 625
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	2 cut(s)	275, 418
FatI	CATG	4 cut(s)	400, 451, 483, 623
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	75, 139, 288, 318, 392
FokI	GGATG	3 cut(s)	166, 520, 589
Fsp4HI	GCNGC	5 cut(s)	75, 139, 288, 318, 392
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	5 cut(s)	75, 139, 288, 318, 392
HaeIII	GGCC	4 cut(s)	52, 273, 296, 425
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	2 cut(s)	89, 566
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	404, 455, 487, 627
HinfI	GANTC	3 cut(s)	119, 233, 356
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	128, 199
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	5 cut(s)	23, 353, 452, 476, 520
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	4 cut(s)	68, 193, 244, 375
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	8 cut(s)	77, 141, 229, 290, 317, 394, 494, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	404, 455, 487, 627
KflI	GGGWCCC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	172, 445
LmnI	GCTCC	4 cut(s)	14, 71, 197, 388
LpnPI	CCDG	7 cut(s)	21, 36, 108, 255, 366, 423, 603
Lsp1109I	GCAGC	5 cut(s)	61, 125, 274, 329, 378
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	187, 434
MalI	GATC	2 cut(s)	174, 447
MboI	GATC	2 cut(s)	172, 445
MboII	GAAGA	2 cut(s)	140, 440
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	2 cut(s)	88, 248
MluI	ACGCGT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	22, 23, 25, 211, 305, 556, 616
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	246, 549
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
NdeII	GATC	2 cut(s)	172, 445
NlaIII	CATG	4 cut(s)	404, 455, 487, 627
NlaIV	GGNNCC	4 cut(s)	199, 297, 406, 407
NmuCI	GTSAC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	119, 233
PkrI	GCNGC	5 cut(s)	76, 140, 289, 319, 393
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	199, 297, 406, 407
PspPI	GGNCC	3 cut(s)	50, 295, 405
PspPPI	RGGWCCY	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	246, 549
SatI	GCNGC	5 cut(s)	75, 139, 288, 318, 392
Sau3AI	GATC	2 cut(s)	172, 445
Sau96I	GGNCC	3 cut(s)	50, 295, 405
SchI	GAGTC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	405
Sse9I	AATT	2 cut(s)	88, 248
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	2 cut(s)	183, 426
TaaI	ACNGT	4 cut(s)	68, 193, 244, 375
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	310, 519
TasI	AATT	2 cut(s)	88, 248
TfiI	GAWTC	2 cut(s)	119, 233
Tru1I	TTAA	2 cut(s)	246, 549
Tru9I	TTAA	2 cut(s)	246, 549
TscAI	CASTG	2 cut(s)	271, 327
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	5 cut(s)	74, 138, 287, 317, 391
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	271, 327
VpaK11BI	GGWCC	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	88, 248
XmiI	GTMKAC	1 cut(s)	580
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.