Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013100

Physical Location & Seq

Genomic Coordinates Reverse (-)

13602496 .. 13605193

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGTTGCTCAGCCTCCCTTCCAGATAGGAGTTCTGGGCTGTTGGCCGGGCCAAATTCCGAAAACGGTGGAGCTTCTGATGCCAAAAATCTACGCGTAAAGCTAGTATTGTTGGGCGACTCTGGTGTTGGTAAAAGCTGTATTGTTCTGCGTTTTGTTCGTGGTCAGTTTGACCCCACATCCAAGGTGACTGTTGGAGCTTCATTCTTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAATTTGAAATATGGGACACTGCAGGACAAGAGAGGTATGCTGCATTGGCCCCACTTTATTATCGTGGTGCTGCGGTTGCAGTTATTGTGTATGATATAACAAGTCCTGATTCTTTCAACAAAGCGCAGTATTGGGTTAAGGAGCTACAGAAACATGGGAGCCCTGATATCGTCTTGGCCTTGGTCGGTAACAAAGCTGATCTTCATGAGAAACGTGAAGTTCCTGTTCAAGAGGGAATTGAATACGCTGAAAAGAATGGAATGTTCTTTATCGAGACATCTGCAAAGACAGCAGATAATATTAATCAGCTGTTTGAGGAAATTGCCAAGCGACTACCCCGTCCAGCCCCTTCATCAACGCAGCAGAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

22.29

Weight (kDa)

6.15

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	30 - 192	1.8e-10	ADP-ribosylation factor family
Ras	PF00071	34 - 194	3.7e-59	Ras family
Roc	PF08477	34 - 149	1.5e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54840 AT3G54840 AT3G54840
fragaria_vesca	FvH4_7g18850
malus_domestica	MD01G1103700.v1.1 MD07G1170500.v1.1
prunus_persica	Prupe.2G209500_v2.0.a1
pyrus_communis	pycom01g13030 pycom07g16450
rosa_chinensis	RchiOBHm_Chr1g0362731
rosa_laevigata	RLG00000027627
rosa_multiflora	Rmu_sc0000046.1_g000017
rosa_roxburghii	Rroxscaffold_4G00293830
rosa_rugosa	Rorug01G0300900
rosa_samantha	Rh1BG273200 Rh1CG290200 Rh1DG303800
rosa_wichuraiana	Rw1G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	55, 248
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	254, 364, 476, 488
AluBI	AGCT	8 cut(s)	74, 103, 138, 200, 224, 391, 443, 556
AluI	AGCT	8 cut(s)	74, 103, 138, 200, 224, 391, 443, 556
Alw26I	GTCTC	1 cut(s)	515
AoxI	GGCC	4 cut(s)	45, 50, 294, 423
ApeKI	GCWGC	3 cut(s)	287, 317, 607
ApoI	RAATTY	2 cut(s)	55, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	50, 295
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	274, 304
BcgI	CGANNNNNNTGC	4 cut(s)	208, 242, 509, 543
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	2 cut(s)	267, 392
BisI	GCNGC	3 cut(s)	288, 318, 608
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	3 cut(s)	289, 319, 609
Bme1390I	CCNGG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	50, 295
BmiI	GGNNCC	2 cut(s)	297, 407
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	183, 426
BseDI	CCNNGG	2 cut(s)	183, 426
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	274, 304
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	47, 52, 296, 425
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	47, 52, 296, 425
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	445
Bsp1720I	GCTNAGC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	4 cut(s)	47, 52, 296, 425
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	297, 407
BspMAI	CTGCAG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	183, 426
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	183, 426
Bst4CI	ACNGT	3 cut(s)	68, 193, 244
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	2 cut(s)	267, 392
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	274, 304
BsuRI	GGCC	4 cut(s)	47, 52, 296, 425
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	50, 295
CviAII	CATG	3 cut(s)	401, 452, 618
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	585
DseDI	GACNNNNNNGTC	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	183, 426
Eco24I	GRGCYC	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	183, 426
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	2 cut(s)	183, 426
FaeI	CATG	3 cut(s)	404, 455, 621
FaiI	YATR	7 cut(s)	259, 285, 339, 344, 402, 453, 619
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	3 cut(s)	400, 451, 617
Fnu4HI	GCNGC	3 cut(s)	288, 318, 608
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	3 cut(s)	288, 318, 608
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	288, 318, 608
HaeIII	GGCC	4 cut(s)	47, 52, 296, 425
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	404, 455, 621
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	4 cut(s)	119, 233, 356, 613
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	61, 79
Hpy188III	TCNNGA	5 cut(s)	23, 353, 452, 476, 520
HpyAV	CCTTC	2 cut(s)	29, 606
HpyCH4III	ACNGT	3 cut(s)	68, 193, 244
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	229, 269, 290, 326, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	404, 455, 621
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	4 cut(s)	71, 197, 388, 405
LpnPI	CCDG	9 cut(s)	21, 36, 61, 108, 255, 366, 423, 483, 603
Lsp1109I	GCAGC	2 cut(s)	274, 304
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	187, 210, 434
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	4 cut(s)	55, 248, 483, 567
MluI	ACGCGT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	25, 273, 472, 556
MseI	TTAA	3 cut(s)	246, 384, 549
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	80, 293, 323, 536
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	404, 455, 621
NlaIV	GGNNCC	2 cut(s)	297, 407
NmuCI	GTSAC	2 cut(s)	187, 210
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	233, 356, 613
PkrI	GCNGC	3 cut(s)	289, 319, 609
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	297, 407
PspPI	GGNCC	2 cut(s)	50, 295
PstI	CTGCAG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	246, 384, 549
SatI	GCNGC	3 cut(s)	288, 318, 608
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	50, 295
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	2 cut(s)	267, 392
Sse9I	AATT	4 cut(s)	55, 248, 483, 567
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	183, 426
TaaI	ACNGT	3 cut(s)	68, 193, 244
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	519
TasI	AATT	4 cut(s)	55, 248, 483, 567
TfiI	GAWTC	3 cut(s)	233, 356, 613
Tru1I	TTAA	3 cut(s)	246, 384, 549
Tru9I	TTAA	3 cut(s)	246, 384, 549
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	187, 210
TseI	GCWGC	3 cut(s)	287, 317, 607
Tsp45I	GTSAC	2 cut(s)	187, 210
TspDTI	ATGAA	3 cut(s)	192, 440, 588
TspRI	CASTG	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	55, 248
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.