Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020148

Physical Location & Seq

Genomic Coordinates Reverse (-)

21188397 .. 21189967

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTGAATCAAGGAGCTTAGCCTCACCACCAATGTTGATGATTCTTCTCAGCCTTGTAATAGCTTCCTTCTTCAACCACACAGCTGGACAAATCGGAGTATGCTACGGGATGCTAGGCGATACCTTGCCAAGTCCATCGGACGTTGTGGCTCTTTACAAACAACAAAACATCCAGCGAATGCGGCTCTACGGCCCTGACCCAGGCGCTCTTGCCGCTCTCCGTGGCTCTGACATCGAGCTCATCCTCGACGTTCCCAGTTCAGATCTTGAACGTCTCGCCTCCAGTCAAACGGAGGCCGACAAGTGGGTTCAAGAAAACGTTCAGAGCTACAGAGATGGTGTCAGATTCCGGTACATCAACGTTGGAAATGAGGTGAAACCCTCAGTTGGGGGGTTTCTCTTACAAGCAATGCAGAACATCGAGAACGCGGTTTCTGGAGCAGGGCTTGAAGTCAAGGTCTCAACAGCTATAGCCACTGACACCACCACTGATACGTCTCCTCCGTCTCAAGGAAGGTTCAGGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTGGCAAGCAAGCAATCTCCCTTGCTCGTGAATCTCTACCCTTACTTCAGCTACATGGGAGACACGGCCAACATCCATCTAGACTACGCTCTGTTCACCGCCCAGTCCACTGTTGATAACGATCCAGGGTACTCATACCAAAACCTATTCGACGCAAATCTCGACTCGGTTTATGCAGCATTGGAGAAATCAGGGGGCGGATCGTTGGAAATCGTGGTGTCGGAGACCGGTTGGCCCACAGAGGGAGCAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACATGTGAAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAGACTTATATATTCGCTATGTTCGATGAGAATAAGAAGGAACCAACGTATGAGAAGTTTTGGGGACTGTTTCATCCAGATCGACAGTCTAAGTATGAAGTTAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002376 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008422 GO:0008810 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009814 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

339

Amino Acids

37.34

Weight (kDa)

4.85

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	48 - 354	2.7e-115	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57260 AT3G57260
malus_domestica	MD12G1224300.v1.1 MD14G1078800.v1.1
pyrus_communis	pycom12g20990
rosa_rugosa	Rorug06G0414000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	431
AciI	CCGC	5 cut(s)	184, 216, 431, 663, 762
AclI	AACGTT	2 cut(s)	321, 363
AclWI	GGATC	3 cut(s)	680, 772, 886
AcoI	YGGCCR	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	2 cut(s)	356, 695
AfiI	CCNNNNNNNGG	7 cut(s)	203, 306, 389, 390, 512, 557, 806
AflIII	ACRYGT	1 cut(s)	865
AgeI	ACCGGT	1 cut(s)	791
AgsI	TTSAA	5 cut(s)	76, 272, 314, 452, 1015
AjnI	CCWGG	3 cut(s)	202, 688, 892
AluBI	AGCT	9 cut(s)	18, 65, 86, 241, 330, 470, 540, 615, 902
AluI	AGCT	9 cut(s)	18, 65, 86, 241, 330, 470, 540, 615, 902
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	7 cut(s)	281, 466, 504, 513, 618, 782, 902
AlwI	GGATC	3 cut(s)	680, 772, 886
AoxI	GGCC	5 cut(s)	193, 297, 630, 797, 890
ApeKI	GCWGC	1 cut(s)	740
AsiGI	ACCGGT	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	194, 798
AsuHPI	GGTGA	4 cut(s)	18, 388, 652, 873
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	752
BccI	CCATC	3 cut(s)	145, 332, 648
BceAI	ACGGC	2 cut(s)	208, 645
BciT130I	CCWGG	3 cut(s)	204, 690, 894
BcoDI	GTCTC	7 cut(s)	281, 466, 504, 513, 618, 782, 902
BfaI	CTAG	2 cut(s)	116, 644
BfmI	CTRYAG	3 cut(s)	331, 471, 903
BfoI	RGCGCY	1 cut(s)	210
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	3 cut(s)	185, 216, 741
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	3 cut(s)	186, 217, 742
Bme1390I	CCNGG	3 cut(s)	204, 690, 894
BmgT120I	GGNCC	2 cut(s)	194, 798
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	3 cut(s)	204, 690, 894
BmrI	ACTGGG	2 cut(s)	252, 661
BmsI	GCATC	1 cut(s)	102
BmuI	ACTGGG	2 cut(s)	252, 661
BpmI	CTGGAG	2 cut(s)	268, 459
Bpu1102I	GCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	684
BsaI	GGTCTC	2 cut(s)	466, 782
BsaJI	CCNNGG	4 cut(s)	202, 223, 689, 893
BsaWI	WCCGGW	2 cut(s)	351, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	7 cut(s)	203, 306, 389, 390, 512, 557, 806
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	4 cut(s)	258, 285, 551, 667
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	3 cut(s)	204, 690, 894
BseDI	CCNNGG	4 cut(s)	202, 223, 689, 893
BseGI	GGATG	6 cut(s)	117, 171, 243, 532, 636, 979
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	7 cut(s)	203, 306, 389, 390, 512, 557, 806
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	64, 399
BseNI	ACTGG	4 cut(s)	258, 285, 551, 667
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	5 cut(s)	195, 299, 632, 799, 892
BshTI	ACCGGT	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	352, 792
BslFI	GGGAC	2 cut(s)	832, 984
BslI	CCNNNNNNNGG	7 cut(s)	203, 306, 389, 390, 512, 557, 806
BsmAI	GTCTC	7 cut(s)	281, 466, 504, 513, 618, 782, 902
BsmBI	CGTCTC	3 cut(s)	281, 504, 513
BsmFI	GGGAC	2 cut(s)	832, 984
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	5 cut(s)	195, 299, 632, 799, 892
Bso31I	GGTCTC	2 cut(s)	466, 782
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	265, 685, 764, 878, 985
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	184, 216, 431, 663, 762
BspANI	GGCC	5 cut(s)	195, 299, 632, 799, 892
BspCNI	CTCAG	2 cut(s)	63, 398
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	3 cut(s)	680, 772, 886
BspTNI	GGTCTC	2 cut(s)	466, 782
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	4 cut(s)	258, 285, 551, 667
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	4 cut(s)	202, 223, 689, 893
BssMI	GATC	5 cut(s)	265, 685, 764, 878, 985
BssSI	CACGAG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	3 cut(s)	204, 690, 894
Bst4CI	ACNGT	3 cut(s)	676, 975, 993
BstC8I	GCNNGC	2 cut(s)	571, 575
BstDEI	CTNAG	4 cut(s)	19, 50, 385, 996
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	6 cut(s)	117, 171, 243, 532, 636, 979
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	5 cut(s)	268, 688, 767, 881, 988
BstMAI	GTCTC	7 cut(s)	281, 466, 504, 513, 618, 782, 902
BstMBI	GATC	5 cut(s)	265, 685, 764, 878, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 215
BstNI	CCWGG	3 cut(s)	204, 690, 894
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	3 cut(s)	202, 688, 892
BstSFI	CTRYAG	3 cut(s)	331, 471, 903
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	5 cut(s)	195, 299, 632, 799, 892
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	6 cut(s)	117, 171, 243, 532, 636, 979
BtsIMutI	CAGTG	4 cut(s)	477, 489, 558, 672
Cac8I	GCNNGC	2 cut(s)	571, 575
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	2 cut(s)	194, 798
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	2 cut(s)	355, 694
CspAI	ACCGGT	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	2 cut(s)	619, 866
CviQI	GTAC	2 cut(s)	355, 694
DdeI	CTNAG	4 cut(s)	19, 50, 385, 996
DpnI	GATC	5 cut(s)	267, 687, 766, 880, 987
DpnII	GATC	5 cut(s)	265, 685, 764, 878, 985
EaeI	YGGCCR	1 cut(s)	630
EciI	GGCGGA	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	466, 782
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	202, 688, 892
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	3 cut(s)	281, 504, 513
FaeI	CATG	2 cut(s)	622, 869
FaqI	GGGAC	2 cut(s)	832, 984
FatI	CATG	2 cut(s)	618, 865
Fnu4HI	GCNGC	3 cut(s)	185, 216, 741
FokI	GGATG	6 cut(s)	124, 158, 230, 539, 623, 966
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	185, 216, 741
FspBI	CTAG	2 cut(s)	116, 644
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	3 cut(s)	185, 216, 741
GsuI	CTGGAG	2 cut(s)	268, 459
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	5 cut(s)	195, 299, 632, 799, 892
HapII	CCGG	2 cut(s)	352, 792
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	622, 869
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	5 cut(s)	8, 43, 348, 595, 728
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	2 cut(s)	352, 792
HphI	GGTGA	4 cut(s)	18, 388, 652, 873
Hpy166II	GTNNAC	3 cut(s)	660, 672, 850
Hpy188I	TCNGA	8 cut(s)	7, 98, 142, 232, 265, 327, 347, 787
Hpy8I	GTNNAC	3 cut(s)	660, 672, 850
Hpy99I	CGWCG	2 cut(s)	254, 719
HpyAV	CCTTC	4 cut(s)	79, 510, 882, 937
HpyCH4III	ACNGT	3 cut(s)	676, 975, 993
HpyCH4IV	ACGT	7 cut(s)	144, 252, 274, 321, 363, 497, 953
HpyCH4V	TGCA	2 cut(s)	415, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 215
HpyF3I	CTNAG	4 cut(s)	19, 50, 385, 996
HpySE526I	ACGT	7 cut(s)	144, 252, 274, 321, 363, 497, 953
Hsp92II	CATG	2 cut(s)	622, 869
HspAI	GCGC	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	265, 685, 764, 878, 985
LmnI	GCTCC	3 cut(s)	15, 440, 809
Lsp1109I	GCAGC	1 cut(s)	752
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	116, 644
MaeII	ACGT	7 cut(s)	144, 252, 274, 321, 363, 497, 953
MalI	GATC	5 cut(s)	267, 687, 766, 880, 987
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	5 cut(s)	265, 685, 764, 878, 985
MboII	GAAGA	3 cut(s)	38, 64, 883
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	853, 1009
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	3 cut(s)	346, 750, 765
MnlI	CCTC	8 cut(s)	34, 257, 289, 292, 367, 394, 513, 799
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	849, 1008
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	352, 792
MspR9I	CCNGG	3 cut(s)	204, 690, 894
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	3 cut(s)	204, 690, 894
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	184, 215
NdeII	GATC	5 cut(s)	265, 685, 764, 878, 985
NlaIII	CATG	2 cut(s)	622, 869
NlaIV	GGNNCC	1 cut(s)	948
NspI	RCATGY	1 cut(s)	869
PciI	ACATGT	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	3 cut(s)	503, 723, 927
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	8, 43, 348, 595
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	186, 217, 742
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PscI	ACATGT	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	2 cut(s)	321, 363
Psp6I	CCWGG	3 cut(s)	202, 688, 892
PspGI	CCWGG	3 cut(s)	202, 688, 892
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	194, 798
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	356, 695
RsaNI	GTAC	2 cut(s)	355, 694
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	849, 1008
SatI	GCNGC	3 cut(s)	185, 216, 741
Sau3AI	GATC	5 cut(s)	265, 685, 764, 878, 985
Sau96I	GGNCC	2 cut(s)	194, 798
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	3 cut(s)	204, 690, 894
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	3 cut(s)	331, 471, 903
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	2 cut(s)	853, 1009
SsiI	CCGC	5 cut(s)	184, 216, 431, 663, 762
SspMI	CTAG	2 cut(s)	116, 644
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	202, 688, 892
TaaI	ACNGT	3 cut(s)	676, 975, 993
TaiI	ACGT	7 cut(s)	147, 255, 277, 324, 366, 500, 956
TaqI	TCGA	8 cut(s)	237, 249, 423, 546, 714, 726, 930, 988
TasI	AATT	2 cut(s)	853, 1009
TauI	GCSGC	2 cut(s)	187, 218
TfiI	GAWTC	4 cut(s)	8, 43, 348, 595
Tru1I	TTAA	2 cut(s)	849, 1008
Tru9I	TTAA	2 cut(s)	849, 1008
TscAI	CASTG	4 cut(s)	484, 496, 558, 679
TseI	GCWGC	1 cut(s)	740
TspDTI	ATGAA	2 cut(s)	968, 1017
TspGWI	ACGGA	3 cut(s)	212, 308, 495
TspRI	CASTG	4 cut(s)	484, 496, 558, 679
XagI	CCTNNNNNAGG	1 cut(s)	201
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	116, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.