Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0020148

Physical Location & Seq

Genomic Coordinates Forward (+)

30058201 .. 30058920

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1224300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAAACCTTGCAAAGGGCATTGAGGTCTGGGGGTCTTGATCACATCAAGGCCTCAACTTCAATTGCAACATCAGTTTTGGGTGAATCTTACCTTCCTTTGACCGCGAACTTTTCTGAAGCCGCCATGGCTTACAAGGCACCTATCGCGCGATACCTAAACGACATCACTGTGCCATTACTAGCCAATGTGTATACTTATTTTTCCTACAGTGGAAACTCAAAAGACATCCCCCTACCTTATGCATTGTTCACTTCTAACAGTGCTGTCGTGACCGATGGTGGTCTAAGTTACTACAACCTGTTTGATGCCATGGTGGATGGACTATACGCATCACTGGAGAAAGCAGCGGCACCTCGTGTCCAGGTGGTGGTGTCTGAGGCCGGTTGGCCCTCCGACGGGAATGGAAACGTGACAGCACCCGGCAATGCGCAAACATACAACTCGAATTTAATAAAGCATGTGTTGTCGTCCAGGGGAACTCCAAGGCTGCCGGGAAGCTCCATCGAGACGTACATTTTTTCCATGTTTAATGAGAACATGAAGCCCGGCGATGCAGTGGAGCAACACCGGGGTCTGTTTTATCCGAACAAGAGTTCCGTTTATCCAATCAACTTCGGGAGCAAAAGATCGAGAGACATACAAGTAGCATACTATGTTGTTGCTGCTTTTGTTATTATACTACTTTTGATAGGTTATGGGAAGATGCAATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002376 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008422 GO:0008810 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009814 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

240

Amino Acids

26.0

Weight (kDa)

7.83

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 206	2.7e-60	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57260 AT3G57260
malus_domestica	MD12G1224300.v1.1 MD14G1078800.v1.1
pyrus_communis	pycom12g20990
rosa_rugosa	Rorug06G0414000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	139, 352
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	3 cut(s)	107, 149, 151
AciI	CCGC	3 cut(s)	105, 123, 350
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	4 cut(s)	15, 370, 398, 399
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	363, 473
AloI	GAACNNNNNNTCC	2 cut(s)	581, 613
AluBI	AGCT	1 cut(s)	501
AluI	AGCT	1 cut(s)	501
Alw26I	GTCTC	2 cut(s)	503, 630
AoxI	GGCC	3 cut(s)	51, 381, 389
ApeKI	GCWGC	3 cut(s)	347, 490, 665
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	151, 433
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	4 cut(s)	423, 495, 549, 572
AsuHPI	GGTGA	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	139, 352
BauI	CACGAG	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	359, 477, 652
BccI	CCATC	3 cut(s)	272, 314, 512
BciT130I	CCWGG	2 cut(s)	365, 475
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	4 cut(s)	423, 495, 549, 572
BcoDI	GTCTC	2 cut(s)	503, 630
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	5 cut(s)	123, 348, 351, 491, 666
BlsI	GCNGC	5 cut(s)	124, 349, 352, 492, 667
Bme1390I	CCNGG	6 cut(s)	365, 423, 475, 495, 549, 572
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	141, 354
BmrFI	CCNGG	6 cut(s)	365, 423, 475, 495, 549, 572
BmsI	GCATC	4 cut(s)	298, 341, 544, 696
BpmI	CTGGAG	1 cut(s)	359
BpuMI	CCSGG	4 cut(s)	423, 495, 549, 572
BsaJI	CCNNGG	5 cut(s)	126, 312, 474, 485, 571
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 370, 398, 399
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	365, 475
BseDI	CCNNGG	5 cut(s)	126, 312, 474, 485, 571
BseGI	GGATG	2 cut(s)	228, 325
BseLI	CCNNNNNNNGG	4 cut(s)	15, 370, 398, 399
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	359, 477, 652
Bsh1236I	CGCG	3 cut(s)	107, 149, 151
BshFI	GGCC	3 cut(s)	53, 383, 391
BshNI	GGYRCC	2 cut(s)	139, 352
BsiSI	CCGG	5 cut(s)	384, 423, 494, 549, 571
BslI	CCNNNNNNNGG	4 cut(s)	15, 370, 398, 399
BsmAI	GTCTC	2 cut(s)	503, 630
BsmBI	CGTCTC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	53, 383, 391
Bsp143I	GATC	2 cut(s)	40, 629
Bsp19I	CCATGG	2 cut(s)	126, 312
BspACI	CCGC	3 cut(s)	105, 123, 350
BspANI	GGCC	3 cut(s)	53, 383, 391
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	3 cut(s)	107, 149, 151
BspLI	GGNNCC	2 cut(s)	141, 354
BspT107I	GGYRCC	2 cut(s)	139, 352
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	5 cut(s)	126, 312, 474, 485, 571
BssMI	GATC	2 cut(s)	40, 629
BssNAI	GTATAC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	126, 312, 485
Bst1107I	GTATAC	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	365, 475
Bst4CI	ACNGT	3 cut(s)	172, 212, 263
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	287, 378
BstDSI	CCRYGG	2 cut(s)	126, 312
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	228, 325
BstFNI	CGCG	3 cut(s)	107, 149, 151
BstHHI	GCGC	2 cut(s)	151, 433
BstKTI	GATC	2 cut(s)	43, 632
BstMAI	GTCTC	2 cut(s)	503, 630
BstMBI	GATC	2 cut(s)	40, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 128, 137, 146
BstNI	CCWGG	2 cut(s)	365, 475
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	6 cut(s)	363, 421, 473, 493, 547, 570
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	3 cut(s)	107, 149, 151
BstV1I	GCAGC	3 cut(s)	359, 477, 652
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	53, 383, 391
BtgI	CCRYGG	2 cut(s)	126, 312
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	228, 325
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	5 cut(s)	168, 217, 268, 335, 564
CfoI	GCGC	2 cut(s)	151, 433
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	5 cut(s)	127, 313, 461, 526, 541
CviJI	RGCY	9 cut(s)	53, 122, 131, 185, 383, 391, 490, 501, 547
CviKI_1	RGCY	9 cut(s)	53, 122, 131, 185, 383, 391, 490, 501, 547
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	287, 378
DpnI	GATC	2 cut(s)	42, 631
DpnII	GATC	2 cut(s)	40, 629
DraIII	CACNNNGTG	1 cut(s)	359
Eco130I	CCWWGG	3 cut(s)	126, 312, 485
Eco147I	AGGCCT	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	363, 473
EcoT14I	CCWWGG	3 cut(s)	126, 312, 485
EcoT22I	ATGCAT	1 cut(s)	247
ErhI	CCWWGG	3 cut(s)	126, 312, 485
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	5 cut(s)	130, 316, 464, 529, 544
FatI	CATG	5 cut(s)	126, 312, 460, 525, 540
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	123, 348, 351, 491, 666
FokI	GGATG	2 cut(s)	215, 332
Fsp4HI	GCNGC	5 cut(s)	123, 348, 351, 491, 666
FspBI	CTAG	1 cut(s)	182
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	150, 432
GluI	GCNGC	5 cut(s)	123, 348, 351, 491, 666
GsuI	CTGGAG	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	53, 383, 391
HapII	CCGG	5 cut(s)	384, 423, 494, 549, 571
HhaI	GCGC	2 cut(s)	151, 433
Hin1II	CATG	5 cut(s)	130, 316, 464, 529, 544
Hin6I	GCGC	2 cut(s)	149, 431
HinP1I	GCGC	2 cut(s)	149, 431
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	5 cut(s)	384, 423, 494, 549, 571
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	195, 252
Hpy188I	TCNGA	4 cut(s)	118, 379, 397, 588
Hpy188III	TCNNGA	5 cut(s)	38, 271, 508, 619, 633
Hpy8I	GTNNAC	2 cut(s)	195, 252
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	3 cut(s)	172, 212, 263
HpyCH4IV	ACGT	2 cut(s)	411, 512
HpyCH4V	TGCA	6 cut(s)	4, 13, 68, 245, 557, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 128, 137, 146
HpyF3I	CTNAG	2 cut(s)	287, 378
HpySE526I	ACGT	2 cut(s)	411, 512
Hsp92II	CATG	5 cut(s)	130, 316, 464, 529, 544
HspAI	GCGC	2 cut(s)	149, 431
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 629
LmnI	GCTCC	3 cut(s)	506, 562, 621
Lsp1109I	GCAGC	3 cut(s)	359, 477, 652
LweI	GCATC	4 cut(s)	298, 341, 544, 696
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	411, 512
MaeIII	GTNAC	3 cut(s)	271, 290, 412
MalI	GATC	2 cut(s)	42, 631
MboI	GATC	2 cut(s)	40, 629
MboII	GAAGA	1 cut(s)	715
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	3 cut(s)	63, 448, 710
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	5 cut(s)	18, 64, 366, 373, 403
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	2 cut(s)	452, 531
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	5 cut(s)	384, 423, 494, 549, 571
MspR9I	CCNGG	6 cut(s)	365, 423, 475, 495, 549, 572
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	2 cut(s)	365, 475
MvnI	CGCG	3 cut(s)	107, 149, 151
MwoI	GCNNNNNNNGC	4 cut(s)	10, 128, 137, 146
NciI	CCSGG	4 cut(s)	423, 495, 549, 572
NcoI	CCATGG	2 cut(s)	126, 312
NdeII	GATC	2 cut(s)	40, 629
NlaIII	CATG	5 cut(s)	130, 316, 464, 529, 544
NlaIV	GGNNCC	2 cut(s)	141, 354
NmuCI	GTSAC	2 cut(s)	271, 412
NsbI	TGCGCA	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	124, 349, 352, 492, 667
Psp6I	CCWGG	2 cut(s)	363, 473
PspGI	CCWGG	2 cut(s)	363, 473
PspN4I	GGNNCC	2 cut(s)	141, 354
PspPI	GGNCC	1 cut(s)	390
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	452, 531
SatI	GCNGC	5 cut(s)	123, 348, 351, 491, 666
Sau3AI	GATC	2 cut(s)	40, 629
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	6 cut(s)	365, 423, 475, 495, 549, 572
SfaNI	GCATC	4 cut(s)	298, 341, 544, 696
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	63, 448, 710
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	105, 123, 350
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	6 cut(s)	363, 421, 473, 493, 547, 570
StyI	CCWWGG	3 cut(s)	126, 312, 485
TaaI	ACNGT	3 cut(s)	172, 212, 263
TaiI	ACGT	2 cut(s)	414, 515
TaqI	TCGA	3 cut(s)	446, 507, 632
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	63, 448, 710
TauI	GCSGC	2 cut(s)	125, 353
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	452, 531
Tru9I	TTAA	2 cut(s)	452, 531
TscAI	CASTG	5 cut(s)	175, 217, 268, 342, 564
TseFI	GTSAC	2 cut(s)	271, 412
TseI	GCWGC	3 cut(s)	347, 490, 665
Tsp45I	GTSAC	2 cut(s)	271, 412
TspDTI	ATGAA	1 cut(s)	557
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	5 cut(s)	175, 217, 268, 342, 564
Van91I	CCANNNNNTGG	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.