MD14G1078800.v1.1

Glucan endo-1,3-beta-glucosidase, basic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0020148
Physical Location & Seq
Forward (+)
9017021 .. 9017615
595 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1078800.v1.1.491

Sequence Viewer

Length: 387 bp
ATGCGAAATATTGAAAAGGCGATTTCTCTTGCTGGCCTTGCCAAACAAATTAAAATTTCCACTGCCATAGACACTGGAGCACTTGGAGAAGCCTATCCTTCGTCAAATGGCTCATTCAAAAGGTTGGGGGAGGGTCATTGGAAATTGTTGTATCAGAGACGGGCTGGCCATCAGCTGGTGGAATGGAAACTACAATTGATAATGCAAAGACATTACTTACACTTGATTCAACATGTGAAAGAAGGGACTCCAAGAAGGCCAGCAAAACCCATAGAAACTTATATATTTGCCATGTTTGATGACAATCAAAAGACACCAGAACTTGAGAAACATTGCGGGGTTTTTTATCCCAAAAAACAGCCTAAATACCCATTTATTTTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

129

Amino Acids

14.85

Weight (kDa)

9.78

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 74 - 124 4.5e-18 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57260 AT3G57260
malus_domestica MD12G1224300.v1.1 MD14G1078800.v1.1
pyrus_communis pycom12g20990
rosa_rugosa Rorug06G0414000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 14, 118, 230, 382
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 3 cut(s) 34, 166, 257
ApoI RAATTY 1 cut(s) 54
BalI TGGCCA 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 82
BccI CCATC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 79
BshFI GGCC 3 cut(s) 36, 168, 259
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 3 cut(s) 36, 168, 259
Bsp1286I GDGCHC 1 cut(s) 82
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 36, 168, 259
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 34, 166, 261
BstMAI GTCTC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 236
BsuRI GGCC 3 cut(s) 36, 168, 259
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 60, 72
Cac8I GCNNGC 3 cut(s) 34, 166, 261
CviAII CATG 2 cut(s) 233, 292
CviJI RGCY 8 cut(s) 36, 92, 111, 164, 168, 175, 259, 361
CviKI_1 RGCY 8 cut(s) 36, 92, 111, 164, 168, 175, 259, 361
EaeI YGGCCR 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 236, 295
FaiI YATR 6 cut(s) 68, 234, 272, 282, 284, 293
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 232, 291
FauI CCCGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 36, 168, 259
Hin1II CATG 2 cut(s) 236, 295
HinfI GANTC 2 cut(s) 226, 247
Hpy188I TCNGA 1 cut(s) 156
HpyAV CCTTC 3 cut(s) 108, 236, 249
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 236, 295
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 6 cut(s) 18, 60, 150, 161, 273, 330
MfeI CAATTG 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 5 cut(s) 48, 54, 143, 194, 382
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
MseI TTAA 2 cut(s) 51, 385
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 175
MunI CAATTG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 236, 295
NspI RCATGY 1 cut(s) 236
PciI ACATGT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 175
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PscI ACATGT 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 51, 385
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 1 cut(s) 82
SetI ASST 2 cut(s) 125, 177
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 5 cut(s) 48, 54, 143, 194, 382
SsiI CCGC 1 cut(s) 336
SspI AATATT 1 cut(s) 10
TasI AATT 5 cut(s) 48, 54, 143, 194, 382
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 51, 385
Tru9I TTAA 2 cut(s) 51, 385
TscAI CASTG 2 cut(s) 67, 79
TspRI CASTG 2 cut(s) 67, 79
Van91I CCANNNNNTGG 1 cut(s) 175
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.