AT3G57690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017935
Physical Location & Seq
Forward (+)
21384146 .. 21384605
460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57690.1

Sequence Viewer

Length: 186 bp
ATGGAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATGGCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACCTGCATCCGCCGCCTCGGCTGCGTTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGCTACTACTTGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

5.97

Weight (kDa)

5.48

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41905 AT3G57690
malus_domestica MD02G1314100.v1.1
prunus_persica Prupe.2G010700_v2.0.a1 Prupe.6G023400_v2.0.a1
pyrus_communis pycom07g00660
rosa_chinensis RchiOBHm_Chr1g0315711
rosa_roxburghii Rroxscaffold_4G00331520
rosa_rugosa Rorug01G0005300
rosa_samantha Rh1AG016000
rosa_wichuraiana Rw1G000940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 131
AciI CCGC 4 cut(s) 24, 54, 105, 108
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 92, 131
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 4 cut(s) 83, 128, 149, 171
AluI AGCT 4 cut(s) 83, 128, 149, 171
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 98
ApeKI GCWGC 4 cut(s) 38, 41, 65, 116
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 25, 28, 52, 103
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 106
BglI GCCNNNNNGGC 2 cut(s) 62, 113
BisI GCNGC 5 cut(s) 39, 42, 66, 108, 117
BlsI GCNGC 5 cut(s) 40, 43, 67, 109, 118
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 131
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 92, 131
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 25, 28, 52, 103
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 92, 131
BsmAI GTCTC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 85
BspACI CCGC 4 cut(s) 24, 54, 105, 108
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 22, 126
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 163
BstMWI GCNNNNNNNGC 5 cut(s) 62, 107, 113, 116, 125
BstNI CCWGG 1 cut(s) 93
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 4 cut(s) 25, 28, 52, 103
BtsCI GGATG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 22, 126
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 2 cut(s) 49, 61
CviJI RGCY 7 cut(s) 65, 83, 116, 128, 135, 149, 171
CviKI_1 RGCY 7 cut(s) 65, 83, 116, 128, 135, 149, 171
DdeI CTNAG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 2 cut(s) 52, 64
FaiI YATR 2 cut(s) 50, 62
FatI CATG 2 cut(s) 48, 60
Fnu4HI GCNGC 5 cut(s) 39, 42, 66, 108, 117
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 5 cut(s) 39, 42, 66, 108, 117
GluI GCNGC 5 cut(s) 39, 42, 66, 108, 117
HapII CCGG 1 cut(s) 86
Hin1II CATG 2 cut(s) 52, 64
HpaII CCGG 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 101, 181
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 107, 113, 116, 125
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 52, 64
LmnI GCTCC 3 cut(s) 80, 88, 146
LpnPI CCDG 5 cut(s) 78, 99, 105, 111, 138
Lsp1109I GCAGC 4 cut(s) 25, 28, 52, 103
LweI GCATC 1 cut(s) 110
MboII GAAGA 3 cut(s) 22, 25, 157
MhlI GDGCHC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 58, 124
MnlI CCTC 4 cut(s) 55, 64, 121, 173
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 5 cut(s) 62, 107, 113, 116, 125
NlaIII CATG 2 cut(s) 52, 64
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 5 cut(s) 40, 43, 67, 109, 118
PpuMI RGGWCCY 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 85
SatI GCNGC 5 cut(s) 39, 42, 66, 108, 117
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 85, 100, 130, 151, 173
SfaNI GCATC 1 cut(s) 110
SinI GGWCC 1 cut(s) 95
SsiI CCGC 4 cut(s) 24, 54, 105, 108
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 91
TauI GCSGC 1 cut(s) 110
TseI GCWGC 4 cut(s) 38, 41, 65, 116
TspDTI ATGAA 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.