MD02G1314100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017935
Physical Location & Seq
Forward (+)
36947773 .. 36947970
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1314100.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGAAATGAAGAAGATTGCTTGTGCTGTCCTCTTCGCAGCCGCCTCTGTCAGCTCTGTGATGGCTCATGCAGGCCACGCCCACGCGCCCGCCCCGGGACCAGGAGCAGCCCCAAGTGATGCCTCTGCCAGCCTCCCCGTCCTAGGGTCCGTGGTTGGTGCATCCGTTGTGTCATTCATTGCTTACTACATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.37

Weight (kDa)

6.89

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41905 AT3G57690
malus_domestica MD02G1314100.v1.1
prunus_persica Prupe.2G010700_v2.0.a1 Prupe.6G023400_v2.0.a1
pyrus_communis pycom07g00660
rosa_chinensis RchiOBHm_Chr1g0315711
rosa_roxburghii Rroxscaffold_4G00331520
rosa_rugosa Rorug01G0005300
rosa_samantha Rh1AG016000
rosa_wichuraiana Rw1G000940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 42, 90
AfiI CCNNNNNNNGG 4 cut(s) 95, 101, 143, 144
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 38, 107
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 98, 147
AsuC2I CCSGG 2 cut(s) 95, 96
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 2 cut(s) 98, 147
AvrII CCTAGG 1 cut(s) 142
BbvI GCAGC 2 cut(s) 50, 119
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 2 cut(s) 95, 96
BfaI CTAG 1 cut(s) 143
BisI GCNGC 3 cut(s) 39, 42, 108
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 3 cut(s) 40, 43, 109
Bme1390I CCNGG 3 cut(s) 95, 96, 102
Bme18I GGWCC 2 cut(s) 98, 147
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 98, 147
BmiI GGNNCC 2 cut(s) 99, 148
BmrFI CCNGG 3 cut(s) 95, 96, 102
BmsI GCATC 2 cut(s) 109, 170
BpuMI CCSGG 2 cut(s) 95, 96
BsaJI CCNNGG 4 cut(s) 93, 94, 142, 150
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 101, 143, 144
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 93, 94, 142, 150
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 4 cut(s) 95, 101, 143, 144
BseMI GCAATG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 50, 119
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 4 cut(s) 95, 101, 143, 144
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 94
BspACI CCGC 2 cut(s) 42, 90
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 99, 148
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 4 cut(s) 93, 94, 142, 150
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 73, 90, 130
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 93, 94, 100
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 50, 119
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 73, 90, 130
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 98, 147
Cfr9I CCCGGG 1 cut(s) 94
CviAII CATG 2 cut(s) 68, 190
CviJI RGCY 6 cut(s) 41, 54, 65, 75, 110, 132
CviKI_1 RGCY 6 cut(s) 41, 54, 65, 75, 110, 132
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 98, 147
Eco88I CYCGRG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 71, 193
FaiI YATR 2 cut(s) 69, 191
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 67, 189
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 39, 42, 108
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 39, 42, 108
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 39, 42, 108
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 71, 193
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HpaII CCGG 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 71, 161, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 71, 193
HspAI GCGC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 5 cut(s) 57, 87, 108, 114, 142
Lsp1109I GCAGC 2 cut(s) 50, 119
LweI GCATC 2 cut(s) 109, 170
MaeI CTAG 1 cut(s) 143
MboII GAAGA 3 cut(s) 22, 25, 25
MnlI CCTC 4 cut(s) 41, 55, 133, 143
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 1 cut(s) 196
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 3 cut(s) 95, 96, 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 2 cut(s) 95, 96
NlaIII CATG 2 cut(s) 71, 193
NlaIV GGNNCC 2 cut(s) 99, 148
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 193
PkrI GCNGC 3 cut(s) 40, 43, 109
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 99, 148
PspPI GGNCC 2 cut(s) 98, 147
SaqAI TTAA 1 cut(s) 196
SatI GCNGC 3 cut(s) 39, 42, 108
Sau96I GGNCC 2 cut(s) 98, 147
ScrFI CCNGG 3 cut(s) 95, 96, 102
SetI ASST 1 cut(s) 56
SfaNI GCATC 2 cut(s) 109, 170
SinI GGWCC 2 cut(s) 98, 147
SmaI CCCGGG 1 cut(s) 96
SsiI CCGC 2 cut(s) 42, 90
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 93, 94, 100
StyI CCWWGG 1 cut(s) 142
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseI GCWGC 2 cut(s) 38, 107
TspDTI ATGAA 2 cut(s) 23, 166
TspGWI ACGGA 2 cut(s) 139, 154
TspMI CCCGGG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 98, 147
XceI RCATGY 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 94
XmaJI CCTAGG 1 cut(s) 142
XspI CTAG 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.