AT3G58520

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014471
Physical Location & Seq
Reverse (-)
21643770 .. 21645548
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58520.1

Sequence Viewer

Length: 1257 bp
ATGTTCGTCAAATCACAAAGCTTTCTCTTTTCGGTGAGTAAGCTGTTTCACCAGCATCAACAATGGCGAGGAATGGGTGCAATGACAAAGGTGAGACTGAAGTGGGTGAAGAACAAGAACCTGGATCACGTCATTGATACTGAGACCGATCTCAAAGCAGCTTGTATCCTCAAAGACGCCATAAAGCGATCTCCCACTGGTTTCCTCACCGCAAAATCCGTCGCCGATTGGCAAAAACTCCTTGGTCTCACCGTCCCTGTTCTCCGCTTCTTGCGCAGGTATCCGACTCTGTTTCACGAATTTCCTCATGCTCGTTACGCAAGCTTACCATGTTTCAAGCTAACGGACACAGCACTAATGCTTGACTCACAAGAAGAGATTATTCATCAAAGCCACGAGGCTGATACAGTGGAGAGACTCTGTAGAGTTCTGATGATGATGAGATCAAAAACTGTCTCTCTTAGATCACTACATTCTCTCAAATTCGATCTCGGTTTACCCGATAACTACGAAAAGACGCTAGTCATGAAATACCCTGATCATTTCTGCTTCGTCAAGGCTTCTAATGGTAACCCGTGTTTAAAGCTTGTAAAATGGCGTGATGAGTTCGCATTCTCGGCGCTGCAGAAGCGAAACGAGGACAATGATGTTTCCGGGGAGGAGTCTAGATACCGCGAGTTCAAGAGAGGTCAGTCTACGTTGACTTTTCCTATGAGTTTCCCTAGAGGATATGGAGCACAGAAGAAGGTCAAAGCATGGATGGATGAGTTTCAAAAACTTCCCTACATATCTCCTTACGATGACCCGAGTAACATTGATCCGGAAAGCGATCTCATGGAGAAACGAGCTGTGGCTGTTTTGCACGAGCTCTTGAGCTTGACTATCCACAAGAAAACCAAGAGGAACTACTTGAGAAGCATGAGAGCGGAGCTCAACATTCCGCACAAGTTCACTCGTCTATTCACGCGATACCCCGGCATTTTCTACCTCTCATTGAAGTGTAAGACAACAACTGTGATCCTCAAAGAAGGGTATCGCCGAGGAAAACTAGTGGATCCGCATCCTCTCACTCGTCTTCGAGATAAGTTTTATCATGTGATGAGAACAGGGTTTCTTTATCGGGCGAGAGGGCTAGGCATGGTCTCTAAAGAGGAACTTTTGCTTGATAGGCCAGAGGATGACCTTGAGGAAGAAGGCTCTGAAGAAGAAGAGATTGTGGAAGGAAGTGAGCTTGAAGAAGATTCTGAAGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

418

Amino Acids

48.82

Weight (kDa)

8.96

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 36 - 370 2.8e-121 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58520 AT3G58520
fragaria_vesca FvH4_6g21580
malus_domestica MD14G1051500.v1.1
prunus_persica Prupe.7G084500_v2.0.a1
pyrus_communis pycom14g04280
rosa_chinensis RchiOBHm_Chr3g0478831
rosa_laevigata RLG00000023622
rosa_multiflora Rmu_sc0004831.1_g000011 Rmu_sc0005751.1_g000005 Rmu_sc0037242.1_g000002
rosa_roxburghii Rroxscaffold_6G00403040
rosa_rugosa Rorug03G0168500
rosa_samantha Rh3BG252100 Rh3CG249000 Rh3DG245200
rosa_wichuraiana Rw3G019800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 926
AccI GTMKAC 1 cut(s) 695
AccII CGCG 2 cut(s) 675, 967
AccIII TCCGGA 1 cut(s) 820
AciI CCGC 6 cut(s) 210, 265, 673, 926, 941, 1058
AclWI GGATC 5 cut(s) 132, 812, 1012, 1049, 1062
AcsI RAATTY 2 cut(s) 299, 482
AcuI CTGAAG 2 cut(s) 119, 1221
AcyI GRCGYC 1 cut(s) 177
AgsI TTSAA 5 cut(s) 337, 682, 773, 997, 1235
AhlI ACTAGT 1 cut(s) 1048
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 120
Alw21I GWGCWC 3 cut(s) 739, 870, 933
Alw26I GTCTC 6 cut(s) 88, 137, 251, 409, 460, 1147
AlwI GGATC 5 cut(s) 132, 812, 1012, 1049, 1062
Ama87I CYCGRG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 820
AoxI GGCC 1 cut(s) 1169
ApeKI GCWGC 2 cut(s) 158, 622
ApoI RAATTY 2 cut(s) 299, 482
AspLEI GCGC 2 cut(s) 276, 622
AsuC2I CCSGG 2 cut(s) 655, 975
AsuHPI GGTGA 6 cut(s) 41, 46, 103, 118, 199, 241
AvaI CYCGRG 1 cut(s) 805
BamHI GGATCC 1 cut(s) 1054
BanII GRGCYC 2 cut(s) 870, 933
BauI CACGAG 2 cut(s) 395, 863
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 3 cut(s) 739, 870, 933
BbvI GCAGC 2 cut(s) 170, 609
BccI CCATC 1 cut(s) 754
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 2 cut(s) 176, 291
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 2 cut(s) 655, 975
BcoDI GTCTC 6 cut(s) 88, 137, 251, 409, 460, 1147
BcuI ACTAGT 1 cut(s) 1048
BfaI CTAG 5 cut(s) 521, 666, 723, 1049, 1133
BfmI CTRYAG 2 cut(s) 421, 623
BfoI RGCGCY 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 267
BfuI GTATCC 2 cut(s) 176, 291
BisI GCNGC 2 cut(s) 159, 623
BlsI GCNGC 2 cut(s) 160, 624
Bme1390I CCNGG 3 cut(s) 122, 655, 975
BmeT110I CYCGRG 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 1056
BmrFI CCNGG 3 cut(s) 122, 655, 975
BmsI GCATC 2 cut(s) 64, 1069
BoxI GACNNNNGTC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 1067
BplI GAGNNNNNCTC 2 cut(s) 915, 947
BpuEI CTTGAG 3 cut(s) 892, 931, 1205
BpuMI CCSGG 2 cut(s) 655, 975
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 3 cut(s) 137, 251, 1147
BsaJI CCNNGG 4 cut(s) 241, 654, 973, 1039
BsaWI WCCGGW 1 cut(s) 820
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 1059
BseAI TCCGGA 1 cut(s) 820
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 4 cut(s) 241, 654, 973, 1039
BseGI GGATG 4 cut(s) 765, 769, 1060, 1183
BseJI GATNNNNATC 1 cut(s) 1059
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 2 cut(s) 170, 609
Bsh1236I CGCG 2 cut(s) 675, 967
BshFI GGCC 1 cut(s) 1171
BsiHKAI GWGCWC 3 cut(s) 739, 870, 933
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 654, 821, 975
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 6 cut(s) 88, 137, 251, 409, 460, 1147
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 1 cut(s) 1171
Bso31I GGTCTC 3 cut(s) 137, 251, 1147
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 739, 870, 933
Bsp13I TCCGGA 1 cut(s) 820
BspACI CCGC 6 cut(s) 210, 265, 673, 926, 941, 1058
BspANI GGCC 1 cut(s) 1171
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 820
BspFNI CGCG 2 cut(s) 675, 967
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 1056
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 5 cut(s) 132, 812, 1012, 1049, 1062
BspTNI GGTCTC 3 cut(s) 137, 251, 1147
BsrBI CCGCTC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 4 cut(s) 241, 654, 973, 1039
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 2 cut(s) 395, 863
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 2 cut(s) 395, 863
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 253, 409, 454, 1015
Bst6I CTCTTC 2 cut(s) 369, 1203
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 141, 461
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 4 cut(s) 765, 769, 1060, 1183
BstFNI CGCG 2 cut(s) 675, 967
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 2 cut(s) 276, 622
BstMAI GTCTC 6 cut(s) 88, 137, 251, 409, 460, 1147
BstMWI GCNNNNNNNGC 5 cut(s) 273, 317, 617, 628, 1168
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 521
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 3 cut(s) 120, 653, 973
BstSFI CTRYAG 2 cut(s) 421, 623
BstUI CGCG 2 cut(s) 675, 967
BstV1I GCAGC 2 cut(s) 170, 609
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
BsuI GTATCC 2 cut(s) 176, 291
BsuRI GGCC 1 cut(s) 1171
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 4 cut(s) 765, 769, 1060, 1183
BtsIMutI CAGTG 2 cut(s) 195, 414
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 525
CfoI GCGC 2 cut(s) 276, 622
CseI GACGC 2 cut(s) 185, 526
CviAII CATG 8 cut(s) 308, 330, 526, 756, 835, 919, 1094, 1138
DdeI CTNAG 2 cut(s) 141, 461
DraI TTTAAA 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 369, 1203
EarI CTCTTC 2 cut(s) 369, 1203
Ecl136II GAGCTC 2 cut(s) 868, 931
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 870, 933
Eco31I GGTCTC 3 cut(s) 137, 251, 1147
Eco53kI GAGCTC 2 cut(s) 868, 931
Eco57I CTGAAG 2 cut(s) 119, 1221
Eco88I CYCGRG 1 cut(s) 805
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 2 cut(s) 868, 931
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 870, 933
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 8 cut(s) 311, 333, 529, 759, 838, 922, 1097, 1141
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FaqI GGGAC 1 cut(s) 239
FatI CATG 8 cut(s) 307, 329, 525, 755, 834, 918, 1093, 1137
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 2 cut(s) 159, 623
FokI GGATG 4 cut(s) 772, 776, 1047, 1190
FriOI GRGCYC 2 cut(s) 870, 933
Fsp4HI GCNGC 2 cut(s) 159, 623
FspBI CTAG 5 cut(s) 521, 666, 723, 1049, 1133
FspI TGCGCA 1 cut(s) 275
GlaI GCGC 2 cut(s) 275, 621
GluI GCNGC 2 cut(s) 159, 623
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 1 cut(s) 1171
HapII CCGG 3 cut(s) 654, 821, 975
HgaI GACGC 2 cut(s) 185, 526
HhaI GCGC 2 cut(s) 276, 622
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 8 cut(s) 311, 333, 529, 759, 838, 922, 1097, 1141
Hin6I GCGC 2 cut(s) 274, 620
HinP1I GCGC 2 cut(s) 274, 620
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HindIII AAGCTT 3 cut(s) 19, 322, 584
HinfI GANTC 5 cut(s) 286, 365, 417, 662, 1241
HpaII CCGG 3 cut(s) 654, 821, 975
HphI GGTGA 6 cut(s) 41, 46, 103, 118, 199, 241
Hpy166II GTNNAC 4 cut(s) 497, 696, 702, 951
Hpy188I TCNGA 4 cut(s) 285, 432, 1201, 1246
Hpy188III TCNNGA 7 cut(s) 296, 526, 666, 682, 821, 871, 1079
Hpy8I GTNNAC 4 cut(s) 497, 696, 702, 951
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 739, 1022, 1187, 1214
HpyCH4III ACNGT 4 cut(s) 253, 409, 454, 1015
HpyCH4IV ACGT 2 cut(s) 129, 698
HpyCH4V TGCA 3 cut(s) 80, 625, 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 317, 617, 628, 1168
HpyF3I CTNAG 2 cut(s) 141, 461
HpySE526I ACGT 2 cut(s) 129, 698
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 8 cut(s) 311, 333, 529, 759, 838, 922, 1097, 1141
HspAI GCGC 2 cut(s) 274, 620
Kpn2I TCCGGA 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 538
LmnI GCTCC 2 cut(s) 734, 928
Lsp1109I GCAGC 2 cut(s) 170, 609
LweI GCATC 2 cut(s) 64, 1069
MaeI CTAG 5 cut(s) 521, 666, 723, 1049, 1133
MaeII ACGT 2 cut(s) 129, 698
MaeIII GTNAC 3 cut(s) 314, 569, 809
MbiI CCGCTC 1 cut(s) 926
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 3 cut(s) 739, 870, 933
MluCI AATT 2 cut(s) 299, 482
MlyI GAGTC 4 cut(s) 280, 359, 411, 671
MmeI TCCRAC 1 cut(s) 308
MroI TCCGGA 1 cut(s) 820
MseI TTAA 1 cut(s) 581
MslI CAYNNNNRTG 1 cut(s) 997
MspI CCGG 3 cut(s) 654, 821, 975
MspR9I CCNGG 3 cut(s) 122, 655, 975
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 675, 967
MwoI GCNNNNNNNGC 5 cut(s) 273, 317, 617, 628, 1168
NciI CCSGG 2 cut(s) 655, 975
NlaIII CATG 8 cut(s) 311, 333, 529, 759, 838, 922, 1097, 1141
NlaIV GGNNCC 1 cut(s) 1056
NmeAIII GCCGAG 2 cut(s) 596, 1064
NsbI TGCGCA 1 cut(s) 275
PagI TCATGA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PctI GAATGC 1 cut(s) 611
PfeI GAWTC 1 cut(s) 1241
PkrI GCNGC 2 cut(s) 160, 624
PleI GAGTC 4 cut(s) 280, 359, 411, 670
PpsI GAGTC 4 cut(s) 280, 359, 411, 670
PshAI GACNNNNGTC 1 cut(s) 521
Psp124BI GAGCTC 2 cut(s) 870, 933
Psp6I CCWGG 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 1056
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 1054
RseI CAYNNNNRTG 1 cut(s) 997
SacI GAGCTC 2 cut(s) 870, 933
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 2 cut(s) 159, 623
SchI GAGTC 4 cut(s) 280, 359, 411, 671
ScrFI CCNGG 3 cut(s) 122, 655, 975
SduI GDGCHC 3 cut(s) 739, 870, 933
SfaNI GCATC 2 cut(s) 64, 1069
SfcI CTRYAG 2 cut(s) 421, 623
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 3 cut(s) 871, 910, 1184
SmoI CTYRAG 3 cut(s) 871, 910, 1184
SpeI ACTAGT 1 cut(s) 1048
Sse9I AATT 2 cut(s) 299, 482
SsiI CCGC 6 cut(s) 210, 265, 673, 926, 941, 1058
SspMI CTAG 5 cut(s) 521, 666, 723, 1049, 1133
SstI GAGCTC 2 cut(s) 870, 933
StyD4I CCNGG 3 cut(s) 120, 653, 973
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 253, 409, 454, 1015
TaiI ACGT 2 cut(s) 132, 701
TaqI TCGA 2 cut(s) 486, 1078
TaqII GACCGA 1 cut(s) 161
TasI AATT 2 cut(s) 299, 482
TfiI GAWTC 1 cut(s) 1241
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 2 cut(s) 202, 414
TseI GCWGC 2 cut(s) 158, 622
TspDTI ATGAA 2 cut(s) 374, 542
TspGWI ACGGA 2 cut(s) 208, 359
TspRI CASTG 2 cut(s) 202, 414
XapI RAATTY 2 cut(s) 299, 482
XbaI TCTAGA 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 695
XspI CTAG 5 cut(s) 521, 666, 723, 1049, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.