Prupe.7G084500_v2.0.a1

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014471
Physical Location & Seq
Forward (+)
11984575 .. 11987505
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G084500.1

Sequence Viewer

Length: 1284 bp
ATGAGTACTTTCCTCTTCTCTCTCCTAAAACCCCACACCACCTCTGAACCCACCAAGCTTCTTCTACATCACCACCACCAATGGCGCGGCATAGCCAAGGTCCGCCTGAAATGGGTCAAGAATCGGAGCTTAGACCACATCATCGACACCGAGACCGATCTCAAAGCTGCTTGCCTCCTCAAAGACGCCATCAAGCGCTCGCCAACTGGCTTCCTTACCGCCAAGTCCTTCGCCGATTGGCAAAAGCTTCTCGGCCTAACTGTCCCAGTTCTTCGCTTCATGCGCAGGTACCCTACTCTTTTTCAAGAATTTCCACATGCCCGCTATGCCAGTTTGCCCTGTTTTAAGTTAACAGACACTGCACTATTGTTAGACTCACAAGAACAGAGTATACACCAAACCCACGAGAGTGATACTGTGGAGAGGCTTTGTAGAGTGCTTATGATGACAAAAAGTAAAACTATACCGCTCCAATCTTTGTATCCCTTGAAATGGGATCTGGGTTTGCCTGATGGTTTTGAGAAAGTGTTGGTTCCAAAATACCCTGATTGTTTTAGAATCATTAAGGCCTCAAATGGGATTGGTTGCTTGAAGGTCATACAATGGCCCAAGGAGTATGCGGTGTCGGAATTGCAGAGGAGTAAAGAGGGTGGTGATTTAGGGGATGAGTATAGACAATTCAAGAGGGGGCAGACTGTGTTGGCATTCCCGATGAATTTTCCAAAGGGTTATGGAGGGCAGAAGAAGGTTAGGGTATGGATGGAGGAGTTTCAAAAGTTACCATACATTTCGCCCTATGAGGATTCTAGGCATATTGATCCTAATAGTGATCTTATGGAGAAAAGGGTTGTTGGAGTTTTGCATGAGTTATTGAGCTTGACTCTTCATAAGAAGACCAAGAGGAACTACTTGAGAAGCTTGAGAGAGGAACTAAATCTTCCTCATAAATTTACGAGAATTTTCACAAGGTATCCGGGGATTTTCTACCTCTCATTGAAATGTAAAACAACCACTGTTGCTCTCAGGGAAGGGTACCAGAGAGGGAAATTAGTGAACTGGCATCCCCTCACACGCGTGAGAGAGAAGTTTTATCATGTCATGAGAACAGGGCTTCTTTATCGCAGTAAAGGTGTGCACTTGCTATCCCCGCAAGAGATTTTACTTAACAGTGTGGAGAGTGAAAGTGGGCCGGAAGAATCTGAAGAGGACGAGGTTGGGACAGGTGATGAATGCTATGAGGATGAAATGTCAAATTTGGATTCGGAAGGGTCTGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

428

Amino Acids

49.58

Weight (kDa)

8.91

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58520 AT3G58520
fragaria_vesca FvH4_6g21580
malus_domestica MD14G1051500.v1.1
prunus_persica Prupe.7G084500_v2.0.a1
pyrus_communis pycom14g04280
rosa_chinensis RchiOBHm_Chr3g0478831
rosa_laevigata RLG00000023622
rosa_multiflora Rmu_sc0004831.1_g000011 Rmu_sc0005751.1_g000005 Rmu_sc0037242.1_g000002
rosa_roxburghii Rroxscaffold_6G00403040
rosa_rugosa Rorug03G0168500
rosa_samantha Rh3BG252100 Rh3CG249000 Rh3DG245200
rosa_wichuraiana Rw3G019800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 276
Acc65I GGTACC 2 cut(s) 288, 1032
AccB1I GGYRCC 2 cut(s) 288, 1032
AccBSI CCGCTC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 391
AccII CGCG 2 cut(s) 87, 1074
AciI CCGC 7 cut(s) 87, 103, 219, 322, 467, 620, 1148
AclWI GGATC 2 cut(s) 504, 812
AcsI RAATTY 5 cut(s) 308, 715, 947, 957, 1252
AcuI CTGAAG 1 cut(s) 1221
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 3 cut(s) 7, 290, 1034
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 112, 492, 576
AflIII ACRYGT 1 cut(s) 1072
AgsI TTSAA 6 cut(s) 305, 490, 592, 682, 773, 997
AleI CACNNNNGTG 2 cut(s) 408, 1073
AluBI AGCT 6 cut(s) 58, 129, 167, 247, 876, 918
AluI AGCT 6 cut(s) 58, 129, 167, 247, 876, 918
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 1133
AlwI GGATC 2 cut(s) 504, 812
AlwNI CAGNNNCTG 1 cut(s) 359
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 4 cut(s) 253, 567, 605, 1187
ApaLI GTGCAC 1 cut(s) 1133
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 5 cut(s) 308, 715, 947, 957, 1252
Asp718I GGTACC 2 cut(s) 288, 1032
AspLEI GCGC 3 cut(s) 87, 198, 285
AspS9I GGNCC 3 cut(s) 100, 606, 1187
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 3 cut(s) 62, 665, 1235
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 1137
BanI GGYRCC 2 cut(s) 288, 1032
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 197, 506, 754
BciVI GTATCC 2 cut(s) 492, 981
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 807
BfoI RGCGCY 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 276
BfuI GTATCC 2 cut(s) 492, 981
BisI GCNGC 2 cut(s) 88, 168
BlsI GCNGC 2 cut(s) 89, 169
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 975
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 3 cut(s) 100, 606, 1187
BmiI GGNNCC 3 cut(s) 290, 534, 1034
BmrFI CCNGG 1 cut(s) 975
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 1069
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpuEI CTTGAG 2 cut(s) 931, 940
BpuMI CCSGG 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 96, 609, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 492, 576
Bse1I ACTGG 4 cut(s) 211, 266, 330, 1061
BseDI CCNNGG 3 cut(s) 96, 609, 974
BseGI GGATG 4 cut(s) 670, 765, 1060, 1246
BseLI CCNNNNNNNGG 3 cut(s) 112, 492, 576
BseMII CTCAG 1 cut(s) 1036
BseNI ACTGG 4 cut(s) 211, 266, 330, 1061
BseRI GAGGAG 3 cut(s) 167, 652, 779
BseSI GKGCMC 1 cut(s) 1137
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 2 cut(s) 87, 1074
BshFI GGCC 4 cut(s) 255, 569, 607, 1189
BshNI GGYRCC 2 cut(s) 288, 1032
BsiHKAI GWGCWC 1 cut(s) 1137
BsiSI CCGG 2 cut(s) 974, 1190
BslFI GGGAC 2 cut(s) 248, 1231
BslI CCNNNNNNNGG 3 cut(s) 112, 492, 576
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 248, 1231
BsmI GAATGC 2 cut(s) 704, 1235
BsnI GGCC 4 cut(s) 255, 569, 607, 1189
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 1137
Bsp143I GATC 4 cut(s) 157, 496, 817, 829
BspACI CCGC 7 cut(s) 87, 103, 219, 322, 467, 620, 1148
BspANI GGCC 4 cut(s) 255, 569, 607, 1189
BspCNI CTCAG 1 cut(s) 1035
BspFNI CGCG 2 cut(s) 87, 1074
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 290, 534, 1034
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 504, 812
BspT107I GGYRCC 2 cut(s) 288, 1032
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 4 cut(s) 211, 266, 330, 1061
BssECI CCNNGG 3 cut(s) 96, 609, 974
BssMI GATC 4 cut(s) 157, 496, 817, 829
BssNAI GTATAC 1 cut(s) 392
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 2 cut(s) 96, 609
Bst1107I GTATAC 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 5 cut(s) 262, 418, 697, 1015, 1169
Bst6I CTCTTC 3 cut(s) 20, 888, 1197
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 172, 200, 322
BstDEI CTNAG 2 cut(s) 130, 1022
BstF5I GGATG 4 cut(s) 670, 765, 1060, 1246
BstFNI CGCG 2 cut(s) 87, 1074
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 3 cut(s) 87, 198, 285
BstKTI GATC 4 cut(s) 160, 499, 820, 832
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 157, 496, 817, 829
BstMWI GCNNNNNNNGC 3 cut(s) 282, 326, 1147
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 973
BstSLI GKGCMC 1 cut(s) 1137
BstUI CGCG 2 cut(s) 87, 1074
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZ17I GTATAC 1 cut(s) 392
BsuI GTATCC 2 cut(s) 492, 981
BsuRI GGCC 4 cut(s) 255, 569, 607, 1189
BtsCI GGATG 4 cut(s) 670, 765, 1060, 1246
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 3 cut(s) 357, 1011, 1174
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 172, 200, 322
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 3 cut(s) 87, 198, 285
Cfr13I GGNCC 3 cut(s) 100, 606, 1187
CseI GACGC 1 cut(s) 194
Csp6I GTAC 3 cut(s) 6, 289, 1033
CviAII CATG 5 cut(s) 280, 317, 863, 1094, 1099
CviQI GTAC 3 cut(s) 6, 289, 1033
DdeI CTNAG 2 cut(s) 130, 1022
DpnI GATC 4 cut(s) 159, 498, 819, 831
DpnII GATC 4 cut(s) 157, 496, 817, 829
Eam1104I CTCTTC 3 cut(s) 20, 888, 1197
EarI CTCTTC 3 cut(s) 20, 888, 1197
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 96, 609
Eco147I AGGCCT 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 100
Eco47III AGCGCT 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 1221
EcoT14I CCWWGG 2 cut(s) 96, 609
ErhI CCWWGG 2 cut(s) 96, 609
FaeI CATG 5 cut(s) 283, 320, 866, 1097, 1102
FaqI GGGAC 2 cut(s) 248, 1231
FatI CATG 5 cut(s) 279, 316, 862, 1093, 1098
FauI CCCGC 2 cut(s) 329, 1155
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 88, 168
FokI GGATG 4 cut(s) 677, 772, 1047, 1253
Fsp4HI GCNGC 2 cut(s) 88, 168
FspBI CTAG 1 cut(s) 807
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 3 cut(s) 86, 197, 284
GluI GCNGC 2 cut(s) 88, 168
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 4 cut(s) 255, 569, 607, 1189
HapII CCGG 2 cut(s) 974, 1190
HgaI GACGC 1 cut(s) 194
HhaI GCGC 3 cut(s) 87, 198, 285
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 5 cut(s) 283, 320, 866, 1097, 1102
Hin6I GCGC 3 cut(s) 85, 196, 283
HinP1I GCGC 3 cut(s) 85, 196, 283
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 3 cut(s) 56, 245, 916
HinfI GANTC 7 cut(s) 121, 374, 558, 803, 880, 1196, 1259
HpaI GTTAAC 1 cut(s) 351
HpaII CCGG 2 cut(s) 974, 1190
HphI GGTGA 3 cut(s) 62, 665, 1235
Hpy166II GTNNAC 4 cut(s) 351, 392, 1054, 1135
Hpy188I TCNGA 6 cut(s) 46, 126, 628, 1201, 1264, 1273
Hpy188III TCNNGA 5 cut(s) 118, 305, 682, 709, 1099
Hpy8I GTNNAC 4 cut(s) 351, 392, 1054, 1135
HpyAV CCTTC 5 cut(s) 238, 586, 739, 1022, 1259
HpyCH4III ACNGT 5 cut(s) 262, 418, 697, 1015, 1169
HpyCH4V TGCA 4 cut(s) 362, 634, 862, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 326, 1147
HpyF3I CTNAG 2 cut(s) 130, 1022
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 5 cut(s) 283, 320, 866, 1097, 1102
HspAI GCGC 3 cut(s) 85, 196, 283
KpnI GGTACC 2 cut(s) 292, 1036
KspAI GTTAAC 1 cut(s) 351
Kzo9I GATC 4 cut(s) 157, 496, 817, 829
LmnI GCTCC 2 cut(s) 126, 474
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 1069
MaeI CTAG 1 cut(s) 807
MaeIII GTNAC 1 cut(s) 777
MalI GATC 4 cut(s) 159, 498, 819, 831
MbiI CCGCTC 1 cut(s) 469
MboI GATC 4 cut(s) 157, 496, 817, 829
MboII GAAGA 9 cut(s) 7, 53, 263, 754, 875, 904, 929, 1205, 1214
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 1137
MluCI AATT 8 cut(s) 308, 629, 677, 715, 947, 957, 1046, 1252
MluI ACGCGT 1 cut(s) 1072
MlyI GAGTC 2 cut(s) 368, 874
MmeI TCCRAC 2 cut(s) 606, 832
MseI TTAA 5 cut(s) 345, 350, 564, 1164, 1282
MslI CAYNNNNRTG 3 cut(s) 408, 997, 1073
MspI CCGG 2 cut(s) 974, 1190
MspR9I CCNGG 1 cut(s) 975
Mva1269I GAATGC 2 cut(s) 704, 1235
MvnI CGCG 2 cut(s) 87, 1074
MwoI GCNNNNNNNGC 3 cut(s) 282, 326, 1147
NciI CCSGG 1 cut(s) 975
NdeII GATC 4 cut(s) 157, 496, 817, 829
NlaIII CATG 5 cut(s) 283, 320, 866, 1097, 1102
NlaIV GGNNCC 3 cut(s) 290, 534, 1034
NmeAIII GCCGAG 1 cut(s) 231
NsbI TGCGCA 1 cut(s) 284
NspI RCATGY 1 cut(s) 320
OliI CACNNNNGTG 2 cut(s) 408, 1073
PagI TCATGA 1 cut(s) 1098
PceI AGGCCT 1 cut(s) 569
PctI GAATGC 2 cut(s) 704, 1235
PfeI GAWTC 5 cut(s) 121, 558, 803, 1196, 1259
PkrI GCNGC 2 cut(s) 89, 169
PleI GAGTC 2 cut(s) 368, 874
PpsI GAGTC 2 cut(s) 368, 874
PspN4I GGNNCC 3 cut(s) 290, 534, 1034
PspPI GGNCC 3 cut(s) 100, 606, 1187
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 3 cut(s) 7, 290, 1034
RsaNI GTAC 3 cut(s) 6, 289, 1033
RseI CAYNNNNRTG 3 cut(s) 408, 997, 1073
SaqAI TTAA 5 cut(s) 345, 350, 564, 1164, 1282
SatI GCNGC 2 cut(s) 88, 168
Sau3AI GATC 4 cut(s) 157, 496, 817, 829
Sau96I GGNCC 3 cut(s) 100, 606, 1187
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 368, 874
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 1 cut(s) 1137
SfaNI GCATC 1 cut(s) 1069
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 408, 997, 1073
SmlI CTYRAG 2 cut(s) 910, 919
SmoI CTYRAG 2 cut(s) 910, 919
Sse9I AATT 8 cut(s) 308, 629, 677, 715, 947, 957, 1046, 1252
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 7 cut(s) 87, 103, 219, 322, 467, 620, 1148
SspMI CTAG 1 cut(s) 807
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 2 cut(s) 96, 609
TaaI ACNGT 5 cut(s) 262, 418, 697, 1015, 1169
TaqI TCGA 1 cut(s) 144
TaqII GACCGA 1 cut(s) 170
TasI AATT 8 cut(s) 308, 629, 677, 715, 947, 957, 1046, 1252
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 5 cut(s) 121, 558, 803, 1196, 1259
Tru1I TTAA 5 cut(s) 345, 350, 564, 1164, 1282
Tru9I TTAA 5 cut(s) 345, 350, 564, 1164, 1282
TscAI CASTG 3 cut(s) 364, 1018, 1174
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 5 cut(s) 268, 728, 875, 1242, 1257
TspRI CASTG 3 cut(s) 364, 1018, 1174
VneI GTGCAC 1 cut(s) 1133
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 5 cut(s) 308, 715, 947, 957, 1252
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 391
XspI CTAG 1 cut(s) 807
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.