AT3G61390

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0018313
Physical Location & Seq
Forward (+)
22716238 .. 22718490
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61390.2

Sequence Viewer

Length: 1122 bp
ATGACATTAAAGATTCCGATCCAAGAGATGGTGAAAATGGTTGGCTCTTTAAGATCTCATGGCATCGATATCCCTGAATCAATGGAAATCAACAAAAAAGAGAAGATCTATGTAGCAGTGACAGAGAAAGATCTAGAAAGCAAGTCTAGTCTCGTTTGGGCGATACAGAACAGTGGAGGCAAAGAGTTTTGCATCGTCCATGTTCATCAACCTATCCCGGGGGAGATGTTTCACGAGCAGAAATTGCGTCTCTACAGAAAAGAGAAGGACAAAGCACATAAGAATTCGGAGAAGTACCTTCAAATATGCAGGCAAATGCAGGTCACTGCAGAGATCATATATATTGAAACGGATTCGGTAGAGAAAGGTATCCTCCAATTGATATCTCAGCGCGGAGTCACCAAACTCGTTATGGGAGCAGCAGCTGATAGACACTATTCAATGAGAATGAGAGACTTAAAGTCCAAGAAAGCTATTTACATTCACAGAGAAGCGCCTGCCACTTGTCTTATATGGTTTACGTGCAACGGTTACCTAATTTGTTCAAGGGAAGCTAGAAGAGCAAATAACTTGTATCTAGAATGTGCATCGTCAAATTCTTTGAGTCAATCCGACATAACTAGAGGAACTGAAAGTATAGTTAAAGATGATGATCATCTGATCAAATTAGCTGTCACAGAAGCTGAGGCTTCGAAAAGGAAAGCACGCTTTGAGGCATGTAAGCGCGAAGAAGCTGAAAAAACTGCAGTTGATGCACTCAAAAAGGCTAAACAATGGGAAAATGTGTATTTTGAGGAGTTGAAGCAGAGGAAAGAAACAGAGAAGGCACTGAGGAAAAGAAATGACGAACTTGAAAAGATGAGATCAGAATCCGAGACCCAAATAACCGAATCTTATACTGTGATTAGAAAGCTTCAAGAAAAGAACAACTTATCAATGGAAACGTTTAGAGGAATCAGAGAAGAACAAGAAGAGTTGAAGATAAAGCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAGCTTCTACCTCTAACCACCGTGAACCGCCACAATACTTTATTTGTCCCATTACACACGTGAGGAAACGTTACAAGATCAATGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

373

Amino Acids

43.52

Weight (kDa)

9.07

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 354 - 421 9e-18 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45920 AT2G45920 AT3G61390 AT3G61390 AT3G61390 AT3G61390 AT3G61390 AT3G61410 AT3G61410 AT3G61410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 28
AccII CGCG 3 cut(s) 393, 726, 1020
AciI CCGC 2 cut(s) 393, 1058
AclI AACGTT 2 cut(s) 944, 1099
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 283, 595
AcuI CTGAAG 1 cut(s) 1028
AcvI CACGTG 1 cut(s) 1090
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 28, 218
AflIII ACRYGT 1 cut(s) 1087
AgsI TTSAA 8 cut(s) 302, 347, 441, 546, 802, 854, 917, 979
AhdI GACNNNNNGTC 1 cut(s) 460
Alw26I GTCTC 4 cut(s) 155, 254, 447, 869
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 2 cut(s) 425, 683
Ama87I CYCGRG 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 419, 422
ApoI RAATTY 2 cut(s) 283, 595
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AspLEI GCGC 4 cut(s) 393, 496, 726, 1020
AsuC2I CCSGG 2 cut(s) 218, 219
AsuHPI GGTGA 2 cut(s) 43, 391
AsuII TTCGAA 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 217
BauI CACGAG 1 cut(s) 233
BbrPI CACGTG 1 cut(s) 1090
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 431, 434
BccI CCATC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 380
BclI TGATCA 2 cut(s) 652, 660
BcnI CCSGG 2 cut(s) 218, 219
BcoDI GTCTC 4 cut(s) 155, 254, 447, 869
BfaI CTAG 5 cut(s) 134, 147, 555, 578, 621
BfmI CTRYAG 3 cut(s) 253, 327, 744
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 3 cut(s) 53, 105, 130
BisI GCNGC 2 cut(s) 420, 423
BlsI GCNGC 2 cut(s) 421, 424
Bme1390I CCNGG 2 cut(s) 218, 219
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 218, 219
BmsI GCATC 4 cut(s) 72, 201, 596, 742
Bpu10I CCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 218, 219
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 2 cut(s) 522, 1090
BsaBI GATNNNNATC 4 cut(s) 17, 651, 654, 868
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 2 cut(s) 217, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 218
Bse8I GATNNNNATC 4 cut(s) 17, 651, 654, 868
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 217, 218
BseJI GATNNNNATC 4 cut(s) 17, 651, 654, 868
BseLI CCNNNNNNNGG 2 cut(s) 28, 218
BseMII CTCAG 3 cut(s) 401, 675, 821
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 431, 434
Bsh1236I CGCG 3 cut(s) 393, 726, 1020
BshVI ATCGAT 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 1062
BslI CCNNNNNNNGG 2 cut(s) 28, 218
BsmAI GTCTC 4 cut(s) 155, 254, 447, 869
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 1062
Bso31I GGTCTC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 692
Bsp143I GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
BspACI CCGC 2 cut(s) 393, 1058
BspCNI CTCAG 3 cut(s) 400, 676, 822
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 3 cut(s) 393, 726, 1020
BspMAI CTGCAG 2 cut(s) 331, 748
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 553
BspT104I TTCGAA 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 869
BssECI CCNNGG 2 cut(s) 217, 218
BssMI GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst4CI ACNGT 4 cut(s) 173, 530, 901, 1052
Bst6I CTCTTC 3 cut(s) 553, 966, 1020
BstAPI GCANNNNNTGC 2 cut(s) 244, 752
BstBAI YACGTR 2 cut(s) 522, 1090
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 311, 498, 706
BstDEI CTNAG 4 cut(s) 387, 684, 830, 989
BstEII GGTNACC 1 cut(s) 530
BstFNI CGCG 3 cut(s) 393, 726, 1020
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 4 cut(s) 393, 496, 726, 1020
BstKTI GATC 9 cut(s) 21, 56, 108, 133, 336, 655, 663, 866, 1110
BstMAI GTCTC 4 cut(s) 155, 254, 447, 869
BstMBI GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
BstMWI GCNNNNNNNGC 3 cut(s) 244, 560, 752
BstNSI RCATGY 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 216, 217
BstSFI CTRYAG 3 cut(s) 253, 327, 744
BstUI CGCG 3 cut(s) 393, 726, 1020
BstV1I GCAGC 2 cut(s) 431, 434
BstX2I RGATCY 3 cut(s) 53, 105, 130
BstYI RGATCY 3 cut(s) 53, 105, 130
Bsu15I ATCGAT 1 cut(s) 66
BsuI GTATCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 66
BtsI GCAGTG 2 cut(s) 123, 324
BtsIMutI CAGTG 4 cut(s) 123, 178, 324, 827
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 3 cut(s) 311, 498, 706
CaiI CAGNNNCTG 2 cut(s) 425, 683
CfoI GCGC 4 cut(s) 393, 496, 726, 1020
Cfr9I CCCGGG 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 295
CviAII CATG 3 cut(s) 59, 200, 717
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 4 cut(s) 387, 684, 830, 989
DpnI GATC 9 cut(s) 20, 55, 107, 132, 335, 654, 662, 865, 1109
DpnII GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
DriI GACNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 3 cut(s) 553, 966, 1020
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 3 cut(s) 553, 966, 1020
Eco31I GGTCTC 1 cut(s) 869
Eco32I GATATC 2 cut(s) 70, 384
Eco57I CTGAAG 1 cut(s) 1028
Eco72I CACGTG 1 cut(s) 1090
Eco88I CYCGRG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 530
EcoO65I GGTNACC 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 283
EcoRV GATATC 2 cut(s) 70, 384
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 62, 203, 720
FalI AAGNNNNNCTT 2 cut(s) 914, 946
FaqI GGGAC 1 cut(s) 1062
FatI CATG 3 cut(s) 58, 199, 716
FbaI TGATCA 2 cut(s) 652, 660
Fnu4HI GCNGC 2 cut(s) 420, 423
Fsp4HI GCNGC 2 cut(s) 420, 423
FspBI CTAG 5 cut(s) 134, 147, 555, 578, 621
GlaI GCGC 4 cut(s) 392, 495, 725, 1019
GluI GCNGC 2 cut(s) 420, 423
HaeII RGCGCY 1 cut(s) 497
HapII CCGG 1 cut(s) 218
HgaI GACGC 1 cut(s) 236
HhaI GCGC 4 cut(s) 393, 496, 726, 1020
Hin1II CATG 3 cut(s) 62, 203, 720
Hin6I GCGC 4 cut(s) 391, 494, 724, 1018
HinP1I GCGC 4 cut(s) 391, 494, 724, 1018
HindIII AAGCTT 3 cut(s) 911, 986, 1032
HinfI GANTC 8 cut(s) 13, 77, 353, 396, 604, 869, 890, 954
HpaII CCGG 1 cut(s) 218
HphI GGTGA 2 cut(s) 43, 391
Hpy166II GTNNAC 2 cut(s) 519, 1055
Hpy188I TCNGA 7 cut(s) 18, 289, 613, 660, 868, 874, 959
Hpy188III TCNNGA 4 cut(s) 134, 233, 578, 917
Hpy8I GTNNAC 2 cut(s) 519, 1055
HpyAV CCTTC 4 cut(s) 259, 308, 817, 1003
HpyCH4III ACNGT 4 cut(s) 173, 530, 901, 1052
HpyCH4IV ACGT 4 cut(s) 521, 944, 1089, 1099
HpyCH4V TGCA 8 cut(s) 192, 309, 319, 329, 525, 587, 746, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 560, 752
HpyF3I CTNAG 4 cut(s) 387, 684, 830, 989
HpySE526I ACGT 4 cut(s) 521, 944, 1089, 1099
Hsp92II CATG 3 cut(s) 62, 203, 720
HspAI GCGC 4 cut(s) 391, 494, 724, 1018
Ksp22I TGATCA 2 cut(s) 652, 660
Kzo9I GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 5 cut(s) 87, 231, 295, 305, 510
Lsp1109I GCAGC 2 cut(s) 431, 434
LweI GCATC 4 cut(s) 72, 201, 596, 742
MaeI CTAG 5 cut(s) 134, 147, 555, 578, 621
MaeII ACGT 4 cut(s) 521, 944, 1089, 1099
MaeIII GTNAC 6 cut(s) 118, 322, 397, 530, 673, 1100
MalI GATC 9 cut(s) 20, 55, 107, 132, 335, 654, 662, 865, 1109
MboI GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
MboII GAAGA 7 cut(s) 115, 570, 740, 974, 983, 991, 1037
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 3 cut(s) 53, 105, 130
MluCI AATT 6 cut(s) 242, 283, 377, 537, 595, 665
MlyI GAGTC 2 cut(s) 405, 613
MmeI TCCRAC 1 cut(s) 636
MseI TTAA 4 cut(s) 8, 50, 458, 642
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 218, 219
MunI CAATTG 1 cut(s) 377
MvnI CGCG 3 cut(s) 393, 726, 1020
MwoI GCNNNNNNNGC 3 cut(s) 244, 560, 752
NciI CCSGG 2 cut(s) 218, 219
NdeII GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
NlaIII CATG 3 cut(s) 62, 203, 720
NmuCI GTSAC 4 cut(s) 118, 322, 397, 673
NspI RCATGY 1 cut(s) 720
NspV TTCGAA 1 cut(s) 692
PciSI GCTCTTC 1 cut(s) 553
PfeI GAWTC 6 cut(s) 13, 77, 353, 869, 890, 954
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 2 cut(s) 421, 424
PleI GAGTC 2 cut(s) 404, 612
PmaCI CACGTG 1 cut(s) 1090
PmlI CACGTG 1 cut(s) 1090
PpsI GAGTC 2 cut(s) 404, 612
Ppu21I YACGTR 2 cut(s) 522, 1090
Psp1406I AACGTT 2 cut(s) 944, 1099
PspCI CACGTG 1 cut(s) 1090
PspEI GGTNACC 1 cut(s) 530
PstI CTGCAG 2 cut(s) 331, 748
PstNI CAGNNNCTG 2 cut(s) 425, 683
PsuI RGATCY 3 cut(s) 53, 105, 130
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 553
SaqAI TTAA 4 cut(s) 8, 50, 458, 642
SatI GCNGC 2 cut(s) 420, 423
Sau3AI GATC 9 cut(s) 18, 53, 105, 130, 333, 652, 660, 863, 1107
SchI GAGTC 2 cut(s) 405, 613
ScrFI CCNGG 2 cut(s) 218, 219
SfaNI GCATC 4 cut(s) 72, 201, 596, 742
SfcI CTRYAG 3 cut(s) 253, 327, 744
SfuI TTCGAA 1 cut(s) 692
SmaI CCCGGG 1 cut(s) 219
Sse9I AATT 6 cut(s) 242, 283, 377, 537, 595, 665
SsiI CCGC 2 cut(s) 393, 1058
SspMI CTAG 5 cut(s) 134, 147, 555, 578, 621
StyD4I CCNGG 2 cut(s) 216, 217
TaaI ACNGT 4 cut(s) 173, 530, 901, 1052
TaiI ACGT 4 cut(s) 524, 947, 1092, 1102
TaqI TCGA 2 cut(s) 66, 692
TasI AATT 6 cut(s) 242, 283, 377, 537, 595, 665
TfiI GAWTC 6 cut(s) 13, 77, 353, 869, 890, 954
Tru1I TTAA 4 cut(s) 8, 50, 458, 642
Tru9I TTAA 4 cut(s) 8, 50, 458, 642
TscAI CASTG 4 cut(s) 123, 178, 331, 834
TseFI GTSAC 4 cut(s) 118, 322, 397, 673
TseI GCWGC 2 cut(s) 419, 422
Tsp45I GTSAC 4 cut(s) 118, 322, 397, 673
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 365
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 4 cut(s) 123, 178, 331, 834
Van91I CCANNNNNTGG 1 cut(s) 28
XapI RAATTY 2 cut(s) 283, 595
XbaI TCTAGA 2 cut(s) 133, 577
XceI RCATGY 1 cut(s) 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmaI CCCGGG 1 cut(s) 217
XspI CTAG 5 cut(s) 134, 147, 555, 578, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.