AT3G61410

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0018313
Physical Location & Seq
Forward (+)
22720921 .. 22722696
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61410.1

Sequence Viewer

Length: 885 bp
ATGGAAGAAAAAGAAGAAGCAGGAGTGATGGATGAGAGAATATATGTTGCACTAGGGAGAGAAATAGCCAATAACAAGTCAAATCTGGCATGGGTATTAGATAACTGTCAAGGGAACAAGATCTGTATCGTTCTTGTTCACCGACCTCCTCAAATGATTCCTGTCTTGGGTACCAAGTTCGATGCTGCAACGGTAGATGAAGAATTAGTGAGAGCATACAGAGAGAAACAAAAGGCGAAAACAGACAAGATTCTTGATGAGTACCTTAGAATTTGCTTGCGGAAAGGGGTCCAAGCAGAGAAGCTGTGCGTTGAGATGAACTCGATCGAGAAAGGAATTGTGCAGATGATTTCTGAGAACAAAGTCAGGAAGTTCATCATGGGAGCAGCTTCAGACAAACATTTTTCAACGAAAATGGAGGATTTGAGATCAAAGAAAGCCATCTTCGTCTGCCAACAAGCTTCTGCTACTTGTCATATACGGTTTACCTGCAAAGGATATCTCATCCATACAAGGGAAGCTAGAATGGATGAAGTCCGAGCTCTCTCAGCTCTACTATCTGACTTTCAACGGCTTGTCACCTCACAAAGTAGCGCCAATTTAGATCAAGACAGTGGAGGTTCAAAGAGGAAAAGTGAGCATGAAGAGGGGGAGGAGGAGGAGAGAACATCACGAACCAGCTCTTCTCGGTCTGCTAGTACATTGTCATACTTTGGAGGATCTGAGGCTTCCTCAAGTGTAAGTGTAATGGAAGAGATATCAAACCGTTCATCTCCACCATCTTTACCGTGCAGCGGAATGGGACTGGGCATGATAACCTTCCTGATTAACTCCACCAAACTCTGGCAAAGGCTTGCAATTCAAAACCATAAGCATTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr U-box

Protein Analysis

294

Amino Acids

32.95

Weight (kDa)

8.03

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45920 AT2G45920 AT3G61390 AT3G61390 AT3G61390 AT3G61390 AT3G61390 AT3G61410 AT3G61410 AT3G61410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 843
AciI CCGC 2 cut(s) 280, 795
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 3 cut(s) 172, 263, 700
AfiI CCNNNNNNNGG 4 cut(s) 167, 514, 794, 843
AgsI TTSAA 4 cut(s) 408, 569, 624, 863
AluBI AGCT 7 cut(s) 304, 389, 461, 521, 542, 551, 681
AluI AGCT 7 cut(s) 304, 389, 461, 521, 542, 551, 681
Alw21I GWGCWC 1 cut(s) 544
AlwI GGATC 1 cut(s) 727
ApeKI GCWGC 3 cut(s) 185, 386, 792
ApoI RAATTY 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 131, 571
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 3 cut(s) 172, 398, 804
BccI CCATC 3 cut(s) 22, 449, 787
BceAI ACGGC 1 cut(s) 587
BfaI CTAG 3 cut(s) 53, 522, 696
BfoI RGCGCY 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 120
BisI GCNGC 3 cut(s) 186, 387, 793
BlsI GCNGC 3 cut(s) 187, 388, 794
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 172, 290
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 815
BplI GAGNNNNNCTC 4 cut(s) 305, 337, 716, 748
BpuEI CTTGAG 1 cut(s) 718
BsaBI GATNNNNATC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 514, 794, 843
Bse1I ACTGG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 125
BseGI GGATG 3 cut(s) 37, 504, 535
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 4 cut(s) 167, 514, 794, 843
BseMII CTCAG 3 cut(s) 345, 561, 714
BseNI ACTGG 1 cut(s) 810
BseRI GAGGAG 4 cut(s) 138, 668, 671, 674
BseXI GCAGC 3 cut(s) 172, 398, 804
BsgI GTGCAG 2 cut(s) 362, 811
Bsh1285I CGRYCG 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 544
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 4 cut(s) 167, 514, 794, 843
BsmFI GGGAC 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 5 cut(s) 120, 324, 428, 604, 719
BspACI CCGC 2 cut(s) 280, 795
BspCNI CTCAG 3 cut(s) 346, 560, 715
BspLI GGNNCC 2 cut(s) 172, 290
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 1 cut(s) 727
BspQI GCTCTTC 1 cut(s) 688
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 810
BssMI GATC 5 cut(s) 120, 324, 428, 604, 719
Bst4CI ACNGT 6 cut(s) 107, 193, 483, 614, 767, 789
Bst6I CTCTTC 3 cut(s) 639, 688, 747
BstC8I GCNNGC 2 cut(s) 278, 855
BstDEI CTNAG 4 cut(s) 266, 354, 547, 723
BstF5I GGATG 3 cut(s) 37, 504, 535
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 5 cut(s) 123, 327, 431, 607, 722
BstMBI GATC 5 cut(s) 120, 324, 428, 604, 719
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 172, 398, 804
BstX2I RGATCY 2 cut(s) 120, 719
BstYI RGATCY 2 cut(s) 120, 719
BtsCI GGATG 3 cut(s) 37, 504, 535
BtsIMutI CAGTG 1 cut(s) 619
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 278, 855
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 171, 262, 699
CviAII CATG 4 cut(s) 90, 379, 641, 811
CviQI GTAC 3 cut(s) 171, 262, 699
DdeI CTNAG 4 cut(s) 266, 354, 547, 723
DpnI GATC 5 cut(s) 122, 326, 430, 606, 721
DpnII GATC 5 cut(s) 120, 324, 428, 604, 719
Eam1104I CTCTTC 3 cut(s) 639, 688, 747
EarI CTCTTC 3 cut(s) 639, 688, 747
Ecl136II GAGCTC 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 544
Eco32I GATATC 2 cut(s) 500, 759
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 542
EcoRV GATATC 2 cut(s) 500, 759
EcoT38I GRGCYC 1 cut(s) 544
FaeI CATG 4 cut(s) 93, 382, 644, 814
FaqI GGGAC 1 cut(s) 816
FatI CATG 4 cut(s) 89, 378, 640, 810
Fnu4HI GCNGC 3 cut(s) 186, 387, 793
FokI GGATG 3 cut(s) 44, 491, 542
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 3 cut(s) 186, 387, 793
FspBI CTAG 3 cut(s) 53, 522, 696
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 186, 387, 793
HaeII RGCGCY 1 cut(s) 597
HhaI GCGC 1 cut(s) 596
Hin1II CATG 4 cut(s) 93, 382, 644, 814
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 2 cut(s) 157, 250
HphI GGTGA 2 cut(s) 131, 571
Hpy166II GTNNAC 2 cut(s) 139, 486
Hpy188I TCNGA 5 cut(s) 355, 394, 539, 562, 724
Hpy188III TCNNGA 6 cut(s) 254, 328, 367, 608, 672, 823
Hpy8I GTNNAC 2 cut(s) 139, 486
HpyAV CCTTC 1 cut(s) 829
HpyCH4III ACNGT 6 cut(s) 107, 193, 483, 614, 767, 789
HpyCH4V TGCA 6 cut(s) 50, 188, 343, 492, 792, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 4 cut(s) 266, 354, 547, 723
Hsp92II CATG 4 cut(s) 93, 382, 644, 814
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 5 cut(s) 120, 324, 428, 604, 719
LguI GCTCTTC 1 cut(s) 688
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 9 cut(s) 6, 71, 174, 352, 502, 691, 791, 829, 836
Lsp1109I GCAGC 3 cut(s) 172, 398, 804
LweI GCATC 1 cut(s) 172
MaeI CTAG 3 cut(s) 53, 522, 696
MaeIII GTNAC 1 cut(s) 577
MalI GATC 5 cut(s) 122, 326, 430, 606, 721
MboI GATC 5 cut(s) 120, 324, 428, 604, 719
MboII GAAGA 7 cut(s) 17, 26, 212, 436, 656, 675, 764
MflI RGATCY 2 cut(s) 120, 719
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 5 cut(s) 203, 270, 336, 598, 858
MseI TTAA 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 795
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeII GATC 5 cut(s) 120, 324, 428, 604, 719
NlaIII CATG 4 cut(s) 93, 382, 644, 814
NlaIV GGNNCC 2 cut(s) 172, 290
NmuCI GTSAC 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 688
PfeI GAWTC 2 cut(s) 157, 250
PflMI CCANNNNNTGG 1 cut(s) 843
PkrI GCNGC 3 cut(s) 187, 388, 794
Ple19I CGATCG 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 172, 290
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 2 cut(s) 120, 719
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 3 cut(s) 172, 263, 700
RsaNI GTAC 3 cut(s) 171, 262, 699
SacI GAGCTC 1 cut(s) 544
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 3 cut(s) 186, 387, 793
Sau3AI GATC 5 cut(s) 120, 324, 428, 604, 719
Sau96I GGNCC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 544
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
Sse9I AATT 5 cut(s) 203, 270, 336, 598, 858
SsiI CCGC 2 cut(s) 280, 795
SspMI CTAG 3 cut(s) 53, 522, 696
SstI GAGCTC 1 cut(s) 544
TaaI ACNGT 6 cut(s) 107, 193, 483, 614, 767, 789
TaqI TCGA 3 cut(s) 180, 323, 327
TaqII GACCGA 1 cut(s) 678
TasI AATT 5 cut(s) 203, 270, 336, 598, 858
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 2 cut(s) 157, 250
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 3 cut(s) 185, 386, 792
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 6 cut(s) 213, 332, 364, 546, 657, 759
TspRI CASTG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 270
XspI CTAG 3 cut(s) 53, 522, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.