AT3G62560
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017880
Physical Location & Seq
Forward (+)
23137286 .. 23139145
1860 bp
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UTR
Exon/CDS
Intron
AT3G62560.1

Sequence Viewer

Length: 582 bp
ATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTGGGACTATGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGACATCGGAAGAGCTTAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATCAGATTGCTCGTAGAGTCTGGAAGGACTATTACGCTAAGGTTGATGCAGTGGTATACCTAGTTGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCTCTGATGAATCCCTAGCAAATGTCCCTTTCCTCATCCTTGGAAACAAAATCGACATTCCGTACGCTGCATCAGAAGACGAGCTGCGTTATCATCTAGGCCTCACCAGTTTCACCACTGGGAAAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCTCTTGAGGTGTTCATGTGCAGCATTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAG

Protein Analysis

193

Amino Acids

21.94

Weight (kDa)

6.53

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 192 6.8e-65 ADP-ribosylation factor family
SRPRB PF09439 19 - 144 2.9e-08 Signal recognition particle receptor beta subunit
Roc PF08477 22 - 132 1.4e-08 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 22 - 130 5.5e-08 50S ribosome-binding GTPase
Ras PF00071 22 - 134 3.7e-07 Ras family
G-alpha PF00503 49 - 133 1.2e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62560
fragaria_vesca FvH4_4g19420
prunus_persica Prupe.1G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424451
rosa_laevigata RLG00000007473
rosa_multiflora Rmu_sc0003567.1_g000008
rosa_roxburghii Rroxscaffold_5G00366390
rosa_samantha Rh4BG259300 Rh4CG270600 Rh4DG253800
rosa_wichuraiana Rw4G021930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AfaI GTAC 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 6
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 3 cut(s) 175, 328, 424
AluI AGCT 3 cut(s) 175, 328, 424
Alw26I GTCTC 2 cut(s) 86, 124
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 3 cut(s) 407, 424, 519
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 436, 445
AvaII GGWCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 394, 411, 531
BccI CCATC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 86, 124
BfaI CTAG 6 cut(s) 77, 281, 356, 437, 479, 580
BisI GCNGC 3 cut(s) 408, 425, 520
BlsI GCNGC 3 cut(s) 409, 426, 521
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 5 cut(s) 151, 166, 256, 277, 419
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 138, 447, 463
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 157, 375
BseNI ACTGG 3 cut(s) 138, 447, 463
BseXI GCAGC 3 cut(s) 394, 411, 531
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 93
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 2 cut(s) 57, 350
BsmAI GTCTC 2 cut(s) 86, 124
BsmFI GGGAC 2 cut(s) 57, 350
BsnI GGCC 1 cut(s) 441
Bso31I GGTCTC 1 cut(s) 86
BspANI GGCC 1 cut(s) 441
BspQI GCTCTTC 2 cut(s) 165, 342
BspTNI GGTCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 3 cut(s) 138, 447, 463
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 379
BssNAI GTATAC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 379
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 165, 342
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 176, 258
BstF5I GGATG 2 cut(s) 157, 375
BstMAI GTCTC 2 cut(s) 86, 124
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 6
BstV1I GCAGC 3 cut(s) 394, 411, 531
BstV2I GAAGAC 1 cut(s) 423
BstZ17I GTATAC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 2 cut(s) 157, 375
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 456
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 115, 514
CviJI RGCY 6 cut(s) 148, 175, 203, 328, 424, 441
CviKI_1 RGCY 6 cut(s) 148, 175, 203, 328, 424, 441
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 176, 258
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 165, 342
EarI CTCTTC 2 cut(s) 165, 342
Eco130I CCWWGG 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 118, 517
FaiI YATR 8 cut(s) 24, 49, 116, 277, 292, 294, 515, 573
FaqI GGGAC 2 cut(s) 57, 350
FatI CATG 2 cut(s) 114, 513
FauNDI CATATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 408, 425, 520
FokI GGATG 2 cut(s) 144, 362
Fsp4HI GCNGC 3 cut(s) 408, 425, 520
FspBI CTAG 6 cut(s) 77, 281, 356, 437, 479, 580
GluI GCNGC 3 cut(s) 408, 425, 520
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 118, 517
HinfI GANTC 5 cut(s) 67, 237, 314, 350, 475
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 436, 445
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 6 cut(s) 162, 169, 225, 346, 415, 530
Hpy188III TCNNGA 3 cut(s) 83, 241, 503
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 214, 238, 542
HpyCH4V TGCA 5 cut(s) 269, 290, 311, 410, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 176, 258
Hsp92II CATG 2 cut(s) 118, 517
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
LguI GCTCTTC 2 cut(s) 165, 342
Lsp1109I GCAGC 3 cut(s) 394, 411, 531
LweI GCATC 5 cut(s) 151, 166, 256, 277, 419
MaeI CTAG 6 cut(s) 77, 281, 356, 437, 479, 580
MaeIII GTNAC 1 cut(s) 539
MboII GAAGA 4 cut(s) 76, 182, 329, 428
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 6 cut(s) 209, 297, 383, 452, 499, 510
Mph1103I ATGCAT 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 2 cut(s) 119, 555
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 94
NdeI CATATG 1 cut(s) 292
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 118, 517
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 441
PciI ACATGT 1 cut(s) 114
PciSI GCTCTTC 2 cut(s) 165, 342
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 4 cut(s) 67, 314, 350, 475
Pfl23II CGTACG 1 cut(s) 402
PkrI GCNGC 3 cut(s) 409, 426, 521
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspLI CGTACG 1 cut(s) 402
PspPI GGNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SapI GCTCTTC 2 cut(s) 165, 342
SaqAI TTAA 2 cut(s) 119, 555
SatI GCNGC 3 cut(s) 408, 425, 520
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 8
SfaNI GCATC 5 cut(s) 151, 166, 256, 277, 419
SinI GGWCC 1 cut(s) 136
SmiI ATTTAAAT 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SseBI AGGCCT 1 cut(s) 441
SspMI CTAG 6 cut(s) 77, 281, 356, 437, 479, 580
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 379
SwaI ATTTAAAT 1 cut(s) 556
TaqI TCGA 4 cut(s) 84, 207, 393, 576
TfiI GAWTC 4 cut(s) 67, 314, 350, 475
Tru1I TTAA 2 cut(s) 119, 555
Tru9I TTAA 2 cut(s) 119, 555
TscAI CASTG 2 cut(s) 276, 463
TseI GCWGC 3 cut(s) 407, 424, 519
TspDTI ATGAA 2 cut(s) 363, 502
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 276, 463
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 6 cut(s) 77, 281, 356, 437, 479, 580
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.