AT4G01520
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0019619
Physical Location & Seq
Reverse (-)
656407 .. 659178
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01520.1

Sequence Viewer

Length: 909 bp
ATGATGAAAGATCCGACTGGGTATAGATTTAGTCCGACGGGAGAGGAAGTGATAAACCATTACCTAAAGAACAAAATTCTGGGTAAGACTTGGCTCGTTGATGAAGCCATTAGCGAGATCAACATCTTGAATCACAAACCCAGCAAGGATTTGCCTAAGTTAGCTAGGATCCAATCGGAAGATCTTGAGTGGTACTTTTTCTCTCCGATTGAGTACACGAACCCGAATAAGATGAAAATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTAGTGGTGTTGATCGGAAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGAAGACGCTTGTGTACCATGAAGGTAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGCACGAGTATCACATCACTTGCTTGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATTCGCATACCGTCATAGCGATTAACGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCAATGAACCAACAAGAGGAGCCACAAGGTCCTCACTTAGCTCCGAATGATGATGAGTTTATACGTGGATTGAGACATGTTGATCGAGAGCCGGTTGAATATTTGTTTGCCAATGAAGAAAACATGGATGGTTTGTCTATTATGAATGACTTGACAATCCCAATGATCGCCCAACAAGAGGATCTCATTCTCTCTGAGTGGGAGGGATTTATCGCAGCCACCTTTTTCAGCGACAACAACAATAACAATAACCTTAACGTGCATCAACTAACGTCTTTCTTACCGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

302

Amino Acids

34.51

Weight (kDa)

5.49

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 136 1.1e-35 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01520 AT4G01540 AT4G01540 AT4G01540 AT4G01540 AT4G01550 AT4G01550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 5, 163, 176, 807
AcsI RAATTY 2 cut(s) 75, 477
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 3 cut(s) 194, 215, 347
AfiI CCNNNNNNNGG 2 cut(s) 634, 796
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 2 cut(s) 130, 716
AjnI CCWGG 1 cut(s) 571
AloI GAACNNNNNNTCC 2 cut(s) 238, 270
AluBI AGCT 4 cut(s) 164, 470, 556, 659
AluI AGCT 4 cut(s) 164, 470, 556, 659
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 4 cut(s) 5, 163, 176, 807
AlwNI CAGNNNCTG 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 470, 568, 833
ApoI RAATTY 2 cut(s) 75, 477
AspS9I GGNCC 1 cut(s) 647
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 647
BamHI GGATCC 1 cut(s) 168
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 457, 580, 845
BccI CCATC 1 cut(s) 740
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 2 cut(s) 165, 273
BfmI CTRYAG 2 cut(s) 471, 600
BfuI GTATCC 1 cut(s) 517
BglII AGATCT 1 cut(s) 181
BisI GCNGC 3 cut(s) 471, 569, 834
BlsI GCNGC 3 cut(s) 472, 570, 835
Bme1390I CCNGG 2 cut(s) 573, 903
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 647
BmiI GGNNCC 3 cut(s) 170, 549, 639
BmrFI CCNGG 2 cut(s) 573, 903
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 889
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 903
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 634, 796
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 634, 796
BseMII CTCAG 2 cut(s) 543, 804
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 3 cut(s) 457, 580, 845
BseYI CCCAGC 1 cut(s) 140
BsiSI CCGG 3 cut(s) 545, 710, 902
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 2 cut(s) 634, 796
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 480
Bsp143I GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
BspCNI CTCAG 2 cut(s) 544, 805
BspLI GGNNCC 3 cut(s) 170, 549, 639
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 4 cut(s) 5, 163, 176, 807
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 4 cut(s) 156, 552, 655, 813
BstF5I GGATG 1 cut(s) 751
BstKTI GATC 8 cut(s) 13, 120, 171, 184, 286, 703, 786, 802
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 571, 901
BstSFI CTRYAG 2 cut(s) 471, 600
BstV1I GCAGC 3 cut(s) 457, 580, 845
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 4 cut(s) 10, 168, 181, 799
BstYI RGATCY 4 cut(s) 10, 168, 181, 799
BsuI GTATCC 1 cut(s) 517
BtsCI GGATG 1 cut(s) 751
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 647
CseI GACGC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 193, 214, 346
CviAII CATG 4 cut(s) 350, 368, 695, 742
CviQI GTAC 3 cut(s) 193, 214, 346
DdeI CTNAG 4 cut(s) 156, 552, 655, 813
DpnI GATC 8 cut(s) 12, 119, 170, 183, 285, 702, 785, 801
DpnII GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 4 cut(s) 353, 371, 698, 745
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 1 cut(s) 480
FatI CATG 4 cut(s) 349, 367, 694, 741
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 471, 569, 834
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 3 cut(s) 471, 569, 834
FspBI CTAG 2 cut(s) 165, 273
GluI GCNGC 3 cut(s) 471, 569, 834
GsaI CCCAGC 1 cut(s) 144
HapII CCGG 3 cut(s) 545, 710, 902
HgaI GACGC 1 cut(s) 346
Hin1II CATG 4 cut(s) 353, 371, 698, 745
HinfI GANTC 3 cut(s) 130, 361, 512
HpaII CCGG 3 cut(s) 545, 710, 902
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 2 cut(s) 216, 346
Hpy188I TCNGA 8 cut(s) 15, 36, 178, 207, 288, 511, 663, 814
Hpy188III TCNNGA 3 cut(s) 127, 185, 704
Hpy8I GTNNAC 2 cut(s) 216, 346
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 3 cut(s) 682, 876, 890
HpyCH4V TGCA 3 cut(s) 394, 473, 880
HpyF3I CTNAG 4 cut(s) 156, 552, 655, 813
HpySE526I ACGT 3 cut(s) 682, 876, 890
Hsp92II CATG 4 cut(s) 353, 371, 698, 745
Kzo9I GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
LmnI GCTCC 2 cut(s) 637, 664
Lsp1109I GCAGC 3 cut(s) 457, 580, 845
LweI GCATC 1 cut(s) 889
MaeI CTAG 2 cut(s) 165, 273
MaeII ACGT 3 cut(s) 682, 876, 890
MalI GATC 8 cut(s) 12, 119, 170, 183, 285, 702, 785, 801
MboI GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
MboII GAAGA 4 cut(s) 191, 253, 346, 746
MflI RGATCY 4 cut(s) 10, 168, 181, 799
MluCI AATT 3 cut(s) 75, 291, 477
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 2 cut(s) 38, 59
MseI TTAA 3 cut(s) 330, 534, 873
MspI CCGG 3 cut(s) 545, 710, 902
MspR9I CCNGG 2 cut(s) 573, 903
MvaI CCWGG 1 cut(s) 573
NciI CCSGG 1 cut(s) 903
NdeI CATATG 1 cut(s) 484
NdeII GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
NlaIII CATG 4 cut(s) 353, 371, 698, 745
NlaIV GGNNCC 3 cut(s) 170, 549, 639
NspI RCATGY 1 cut(s) 698
PciI ACATGT 1 cut(s) 694
PfeI GAWTC 2 cut(s) 130, 512
PkrI GCNGC 3 cut(s) 472, 570, 835
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 647
PscI ACATGT 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 170, 549, 639
PspPI GGNCC 1 cut(s) 647
PspPPI RGGWCCY 1 cut(s) 647
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 4 cut(s) 10, 168, 181, 799
RsaI GTAC 3 cut(s) 194, 215, 347
RsaNI GTAC 3 cut(s) 193, 214, 346
SaqAI TTAA 3 cut(s) 330, 534, 873
SatI GCNGC 3 cut(s) 471, 569, 834
Sau3AI GATC 8 cut(s) 10, 117, 168, 181, 283, 700, 783, 799
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 573, 903
SfaNI GCATC 1 cut(s) 889
SfcI CTRYAG 2 cut(s) 471, 600
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 75, 291, 477
SspI AATATT 1 cut(s) 719
SspMI CTAG 2 cut(s) 165, 273
StyD4I CCNGG 2 cut(s) 571, 901
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 3 cut(s) 685, 879, 893
TaqI TCGA 1 cut(s) 703
TasI AATT 3 cut(s) 75, 291, 477
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 2 cut(s) 130, 512
Tru1I TTAA 3 cut(s) 330, 534, 873
Tru9I TTAA 3 cut(s) 330, 534, 873
TseI GCWGC 3 cut(s) 470, 568, 833
TspDTI ATGAA 9 cut(s) 20, 117, 248, 254, 366, 471, 638, 747, 776
TspGWI ACGGA 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 2 cut(s) 75, 477
XceI RCATGY 1 cut(s) 698
XspI CTAG 2 cut(s) 165, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.