Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019619

Physical Location & Seq

Genomic Coordinates Reverse (-)

673862 .. 676445

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGTGAAAGATCTGGTTGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCATTATCTAAAGAACAAAATTTTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATCAACATCTGTAGTTACGACCCAATTTACTTGCCTTCTTTATCGAAGATAAAATCGGATGATCCTGTGTGGTACTTCTTCTGTCCAAAGGAGTATACTTCTGCGAAGAAGAAGGTAACGAAGAGGACTACAAGTTCAGGGTATTGGAAAGCTACTGGTGTTGATAGGAAAATCAAAGATAAGAGAGGTAATCGCGGCGAGATTGGGATAAAGAAGACGCTTGTGTATTATGAAGGTAGAGTTCCTAAAGGTGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAAGATCAGAGGAACTATGTTATCTGCCAAGTGATGTATAAGGGTGAAGATGGAGACGTCCCATCTGGTGGTAACAACTCGAGTGAGCCGAGTCAATCTTTGGTCTCTGATTCGAATACTGTCAGAGCTACGAGTCCCACAGCGCTTGAGTTTGAGAAGCCAGGTCAAGAAAATTTCTTTGGTATGTCTGTGGATGATTTGGGGACTCCAAAGAATGAACAAGAAGATTTCTCTTTGTGGGATGTACTGGATCCAGACATGTTATTCAGTGACAATAACAATCCTACTGTGCATCCACAAGCTCCTCACTTAACCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAACCGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTCATATCCAGACCAACCTTATCTATGACCGAGAACCGCAACGATCACAGGCCAAAGAAGGCTTTGTCAGGGATTATTGTTGATTATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACATCAAGTCCAGGTGATGATAGTGTTGGTAGTTCGAATAGACAATTTCTCCAGACTGGTGGAGATGAGATTCTATCGTCTTGCAATGATCTACAAACCTATGGAGAACCTTCCATCAGTAGTAGCACCCGGCAATCTCAACTCACACGAAGCATCATACGACCAAAACAAGAGGTGAAACAAGATACATCAAGAGCGGTTGATAGTGATACATCCATAGACAAGGAGTCATCTATGGTGAAGACAGAGAAGAAGAGCTGGTTTATTACAGAGGAAGCAATGGAGAGAAACCGCAACAATCCACGGTATATCTATCTCATGAGAATGATCATAGGCTTCATTCTCTTGCTGGCTCTCATTAGCAACATCATATCGGTGTTACAAAACTTGAACCCGGCGATGAAGTTTGATCGCGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

457

Amino Acids

51.82

Weight (kDa)

5.4

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01520 AT4G01540 AT4G01540 AT4G01540 AT4G01540 AT4G01550 AT4G01550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	772
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	1148
AccI	GTMKAC	2 cut(s)	99, 212
AccII	CGCG	2 cut(s)	312, 1365
AciI	CCGC	4 cut(s)	312, 847, 1148, 1243
AclWI	GGATC	3 cut(s)	173, 662, 675
AcsI	RAATTY	2 cut(s)	75, 589
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	191, 663
AfeI	AGCGCT	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	485, 781
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	2 cut(s)	788, 1342
AhdI	GACNNNNNGTC	1 cut(s)	1177
AjnI	CCWGG	2 cut(s)	577, 961
AjuI	GAANNNNNNNTTGG	6 cut(s)	62, 94, 579, 611, 794, 826
AloI	GAACNNNNNNTCC	4 cut(s)	235, 267, 943, 975
AluBI	AGCT	4 cut(s)	269, 545, 719, 1209
AluI	AGCT	4 cut(s)	269, 545, 719, 1209
Alw26I	GTCTC	2 cut(s)	465, 526
AlwI	GGATC	3 cut(s)	173, 662, 675
Ama87I	CYCGRG	1 cut(s)	496
Aor51HI	AGCGCT	1 cut(s)	561
AoxI	GGCC	1 cut(s)	860
ApoI	RAATTY	2 cut(s)	75, 589
AspLEI	GCGC	1 cut(s)	562
AsuC2I	CCSGG	2 cut(s)	1081, 1346
AsuHPI	GGTGA	5 cut(s)	16, 473, 977, 1138, 1201
AsuII	TTCGAA	2 cut(s)	530, 986
AvaI	CYCGRG	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	667
BbsI	GAAGAC	2 cut(s)	338, 1199
BccI	CCATC	3 cut(s)	461, 487, 1073
BciT130I	CCWGG	2 cut(s)	579, 963
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	2 cut(s)	1081, 1346
BcoDI	GTCTC	2 cut(s)	465, 526
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	772
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	4 cut(s)	579, 963, 1081, 1346
BmeRI	GACNNNNNGTC	1 cut(s)	1177
BmeT110I	CYCGRG	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	4 cut(s)	579, 963, 1081, 1346
BmsI	GCATC	3 cut(s)	718, 907, 1113
BpiI	GAAGAC	2 cut(s)	338, 1199
BpmI	CTGGAG	1 cut(s)	986
Bpu14I	TTCGAA	2 cut(s)	530, 986
BpuEI	CTTGAG	2 cut(s)	402, 584
BpuMI	CCSGG	2 cut(s)	1081, 1346
Bsa29I	ATCGAT	1 cut(s)	926
BsaBI	GATNNNNATC	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	380, 946, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 781
Bse1I	ACTGG	3 cut(s)	277, 669, 1012
Bse3DI	GCAATG	2 cut(s)	1042, 1236
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	579, 963
BseCI	ATCGAT	1 cut(s)	926
BseDI	CCNNGG	3 cut(s)	380, 946, 1253
BseGI	GGATG	5 cut(s)	181, 616, 664, 709, 1163
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	485, 781
BseMI	GCAATG	2 cut(s)	1042, 1236
BseNI	ACTGG	3 cut(s)	277, 669, 1012
BseRI	GAGGAG	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	312, 1365
BshFI	GGCC	1 cut(s)	862
BshVI	ATCGAT	1 cut(s)	926
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	2 cut(s)	1081, 1346
BslFI	GGGAC	3 cut(s)	461, 537, 634
BslI	CCNNNNNNNGG	2 cut(s)	485, 781
BsmAI	GTCTC	2 cut(s)	465, 526
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	3 cut(s)	461, 537, 634
BsnI	GGCC	1 cut(s)	862
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	496
Bsp119I	TTCGAA	2 cut(s)	530, 986
Bsp143I	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
Bsp68I	TCGCGA	1 cut(s)	1365
BspACI	CCGC	4 cut(s)	312, 847, 1148, 1243
BspANI	GGCC	1 cut(s)	862
BspDI	ATCGAT	1 cut(s)	926
BspFNI	CGCG	2 cut(s)	312, 1365
BspHI	TCATGA	1 cut(s)	1269
BspLI	GGNNCC	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	3 cut(s)	173, 662, 675
BspQI	GCTCTTC	1 cut(s)	1199
BspT104I	TTCGAA	2 cut(s)	530, 986
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	1148
BsrDI	GCAATG	2 cut(s)	1042, 1236
BsrI	ACTGG	3 cut(s)	277, 669, 1012
BssECI	CCNNGG	3 cut(s)	380, 946, 1253
BssMI	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	380, 946
Bst1107I	GTATAC	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	579, 963
Bst4CI	ACNGT	3 cut(s)	538, 706, 1257
Bst6I	CTCTTC	2 cut(s)	233, 1199
BstACI	GRCGYC	1 cut(s)	474
BstBI	TTCGAA	2 cut(s)	530, 986
BstC8I	GCNNGC	1 cut(s)	1302
BstDSI	CCRYGG	1 cut(s)	1253
BstF5I	GGATG	5 cut(s)	181, 616, 664, 709, 1163
BstFNI	CGCG	2 cut(s)	312, 1365
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	9 cut(s)	13, 120, 181, 424, 670, 856, 1042, 1281, 1363
BstMAI	GTCTC	2 cut(s)	465, 526
BstMBI	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
BstNI	CCWGG	2 cut(s)	579, 963
BstNSI	RCATGY	2 cut(s)	679, 770
BstSCI	CCNGG	4 cut(s)	577, 961, 1079, 1344
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	2 cut(s)	312, 1365
BstV2I	GAAGAC	2 cut(s)	338, 1199
BstX2I	RGATCY	2 cut(s)	10, 667
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	2 cut(s)	10, 667
BstZ17I	GTATAC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	926
BsuRI	GGCC	1 cut(s)	862
BsuTUI	ATCGAT	1 cut(s)	926
BtgI	CCRYGG	1 cut(s)	1253
BtgZI	GCGATG	1 cut(s)	1364
BtsCI	GGATG	5 cut(s)	181, 616, 664, 709, 1163
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	2 cut(s)	691, 907
BtuMI	TCGCGA	1 cut(s)	1365
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	1302
CciI	TCATGA	1 cut(s)	1269
CfoI	GCGC	1 cut(s)	562
ClaI	ATCGAT	1 cut(s)	926
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	190, 662
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	4 cut(s)	392, 676, 767, 1270
CviQI	GTAC	2 cut(s)	190, 662
DpnI	GATC	9 cut(s)	12, 119, 180, 423, 669, 855, 1041, 1280, 1362
DpnII	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
DriI	GACNNNNNGTC	1 cut(s)	1177
Eam1104I	CTCTTC	2 cut(s)	233, 1199
Eam1105I	GACNNNNNGTC	1 cut(s)	1177
EarI	CTCTTC	2 cut(s)	233, 1199
Eco130I	CCWWGG	2 cut(s)	380, 946
Eco31I	GGTCTC	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	930
Eco47III	AGCGCT	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	577, 961
EcoRV	GATATC	1 cut(s)	930
EcoT14I	CCWWGG	2 cut(s)	380, 946
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	2 cut(s)	380, 946
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	4 cut(s)	395, 679, 770, 1273
FaqI	GGGAC	3 cut(s)	461, 537, 634
FatI	CATG	4 cut(s)	391, 675, 766, 1269
FbaI	TGATCA	1 cut(s)	1278
FblI	GTMKAC	2 cut(s)	99, 212
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	5 cut(s)	188, 623, 671, 696, 1150
Fsp4HI	GCNGC	1 cut(s)	313
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	986
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	862
HapII	CCGG	2 cut(s)	1081, 1346
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	395, 679, 770, 1273
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	100, 772
HindII	GTYRAC	2 cut(s)	100, 772
HinfI	GANTC	8 cut(s)	376, 508, 527, 550, 622, 923, 1021, 1178
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	1081, 1346
HphI	GGTGA	5 cut(s)	16, 473, 977, 1138, 1201
Hpy166II	GTNNAC	3 cut(s)	100, 213, 772
Hpy188I	TCNGA	4 cut(s)	175, 426, 526, 542
Hpy188III	TCNNGA	8 cut(s)	419, 584, 671, 819, 1003, 1143, 1270, 1364
Hpy8I	GTNNAC	3 cut(s)	100, 213, 772
Hpy99I	CGWCG	2 cut(s)	101, 104
HpyAV	CCTTC	5 cut(s)	162, 223, 344, 862, 1071
HpyCH4III	ACNGT	3 cut(s)	538, 706, 1257
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	4 cut(s)	391, 709, 935, 1035
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	395, 679, 770, 1273
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	1278
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
LguI	GCTCTTC	1 cut(s)	1199
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	3 cut(s)	718, 907, 1113
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	6 cut(s)	131, 232, 488, 686, 941, 1329
MalI	GATC	9 cut(s)	12, 119, 180, 423, 669, 855, 1041, 1280, 1362
MbiI	CCGCTC	1 cut(s)	1148
MboI	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
MflI	RGATCY	2 cut(s)	10, 667
MluCI	AATT	5 cut(s)	47, 75, 141, 589, 995
MlyI	GAGTC	5 cut(s)	370, 517, 559, 616, 1187
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	9 cut(s)	37, 234, 296, 420, 426, 732, 756, 1117, 1216
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	2 cut(s)	728, 771
MslI	CAYNNNNRTG	2 cut(s)	1274, 1325
MspI	CCGG	2 cut(s)	1081, 1346
MspR9I	CCNGG	4 cut(s)	579, 963, 1081, 1346
MvaI	CCWGG	2 cut(s)	579, 963
MvnI	CGCG	2 cut(s)	312, 1365
NciI	CCSGG	2 cut(s)	1081, 1346
NdeII	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
NlaIII	CATG	4 cut(s)	395, 679, 770, 1273
NlaIV	GGNNCC	1 cut(s)	669
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	686
NruI	TCGCGA	1 cut(s)	1365
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	2 cut(s)	679, 770
NspV	TTCGAA	2 cut(s)	530, 986
PaeR7I	CTCGAG	1 cut(s)	496
PagI	TCATGA	1 cut(s)	1269
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	1199
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	527, 923, 1021
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	5 cut(s)	370, 516, 558, 616, 1186
PpsI	GAGTC	5 cut(s)	370, 516, 558, 616, 1186
PscI	ACATGT	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	577, 961
PspGI	CCWGG	2 cut(s)	577, 961
PspN4I	GGNNCC	1 cut(s)	669
PspXI	VCTCGAGB	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	10, 667
RruI	TCGCGA	1 cut(s)	1365
RsaI	GTAC	2 cut(s)	191, 663
RsaNI	GTAC	2 cut(s)	190, 662
RseI	CAYNNNNRTG	2 cut(s)	1274, 1325
SalI	GTCGAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	1199
SaqAI	TTAA	2 cut(s)	728, 771
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	9 cut(s)	10, 117, 178, 421, 667, 853, 1039, 1278, 1360
SchI	GAGTC	5 cut(s)	370, 517, 559, 616, 1187
ScrFI	CCNGG	4 cut(s)	579, 963, 1081, 1346
SfaNI	GCATC	3 cut(s)	718, 907, 1113
SfcI	CTRYAG	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	496
SfuI	TTCGAA	2 cut(s)	530, 986
SgrDI	CGTCGACG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	2 cut(s)	1274, 1325
SmlI	CTYRAG	3 cut(s)	417, 496, 563
SmoI	CTYRAG	3 cut(s)	417, 496, 563
Sse9I	AATT	5 cut(s)	47, 75, 141, 589, 995
SsiI	CCGC	4 cut(s)	312, 847, 1148, 1243
SspI	AATATT	1 cut(s)	791
StyD4I	CCNGG	4 cut(s)	577, 961, 1079, 1344
StyI	CCWWGG	2 cut(s)	380, 946
TaaI	ACNGT	3 cut(s)	538, 706, 1257
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	6 cut(s)	99, 161, 497, 530, 926, 986
TaqII	GACCGA	1 cut(s)	854
TasI	AATT	5 cut(s)	47, 75, 141, 589, 995
TatI	WGTACW	1 cut(s)	661
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	527, 923, 1021
Tru1I	TTAA	2 cut(s)	728, 771
Tru9I	TTAA	2 cut(s)	728, 771
TscAI	CASTG	2 cut(s)	691, 907
TseFI	GTSAC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	6 cut(s)	363, 648, 802, 819, 1279, 1367
TspRI	CASTG	2 cut(s)	691, 907
Van91I	CCANNNNNTGG	1 cut(s)	485
XapI	RAATTY	2 cut(s)	75, 589
XceI	RCATGY	2 cut(s)	679, 770
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	99, 212
ZraI	GACGTC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.