AT4G01540
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0019619
Physical Location & Seq
Reverse (-)
670483 .. 672789
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01540.4

Sequence Viewer

Length: 1422 bp
ATGATGAAAGGTCTGATTGGGTATAGATTTAGTCCGACGGGAGAGGAAGTGATCAACCATTACCTAAAGAACAAACTTCTGGGTAAGTATTGGCTCGTTGATGAAGCTATTAGCGAGATCAACATCTTGAGTCACAAACCCAGCAAGGATTTGCCTAAGTTAGCTAGGATCCAATCGGAAGATCTTGAATGGTATTTCTTCTCTCCGATTGAGTACACGAACCCGAATAAGATGAAAATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTACTGGTGTTGATCGGGAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGAAGACGCTTGTGTACCATGAAGGTAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGCACGAGTATCACATCACTTGCTTGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATTCGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCAATGAACCAACAAGAGGAGCCACAAGGTCCTCACTTAGCTCCGAATGATGATGAGTTTATACGTGGATTGAGGCATGTTGATCGAGGGACGGTTGAATATTTGTTTGCCAATGAAGAAAACATGGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGAGTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAACCTTAACGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCATTTTCGGGTTATAACGAAGGGAATCCTCCCGATCACGAATTAGTGATGCAAGAGAACCGCAACGATCACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGATGCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAGTCCAAATATTAGTGTTGGTAGTTCAAGTAGACACTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACTTGTACAGATCCTTCAATAATCAGTAGAGAGATCCGGGAATTAACACAAGAGGTGAAACAAGAAATCCCAAGAGCTGTTGATGCACCCATGAACAATGAGTCATCTTTGGTGAAAACAGAGAAGAAAGGCTTGTTTATTGTAGAGGACGCAATGGAGAGAAACCGCAAGAAACCACGATTTATCTATCTCATGAAGATGATCATAGGCAACATCATATCGGTTTTACTACCCGTCAAAAGATTGATCCCGGTGAAGAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

473

Amino Acids

53.6

Weight (kDa)

5.78

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 136 5.6e-35 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01520 AT4G01540 AT4G01540 AT4G01540 AT4G01540 AT4G01550 AT4G01550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AccI GTMKAC 1 cut(s) 1108
AciI CCGC 2 cut(s) 970, 1321
AclWI GGATC 8 cut(s) 163, 176, 804, 1038, 1051, 1160, 1183, 1396
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 3 cut(s) 215, 347, 1162
AfiI CCNNNNNNNGG 3 cut(s) 634, 793, 1001
AgsI TTSAA 5 cut(s) 188, 716, 907, 1104, 1173
AjnI CCWGG 1 cut(s) 571
AloI GAACNNNNNNTCC 4 cut(s) 238, 270, 1063, 1095
AluBI AGCT 6 cut(s) 107, 164, 470, 556, 659, 1232
AluI AGCT 6 cut(s) 107, 164, 470, 556, 659, 1232
AlwI GGATC 8 cut(s) 163, 176, 804, 1038, 1051, 1160, 1183, 1396
AlwNI CAGNNNCTG 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 470, 568, 1020
ApoI RAATTY 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 647, 1005
AsuC2I CCSGG 2 cut(s) 1193, 1406
AsuHPI GGTGA 4 cut(s) 476, 1222, 1279, 1420
AvaII GGWCC 2 cut(s) 647, 1005
BamHI GGATCC 2 cut(s) 168, 1043
BarI GAAGNNNNNNTAC 2 cut(s) 1153, 1185
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 457, 580, 1032
BccI CCATC 2 cut(s) 740, 890
BceAI ACGGC 1 cut(s) 907
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 1 cut(s) 517
BclI TGATCA 2 cut(s) 51, 1356
BcnI CCSGG 2 cut(s) 1193, 1406
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 471, 600
BfuI GTATCC 1 cut(s) 517
BglII AGATCT 2 cut(s) 181, 1147
BisI GCNGC 3 cut(s) 471, 569, 1021
BlsI GCNGC 3 cut(s) 472, 570, 1022
Bme1390I CCNGG 3 cut(s) 573, 1193, 1406
Bme18I GGWCC 2 cut(s) 647, 1005
BmgT120I GGNCC 2 cut(s) 647, 1005
BmiI GGNNCC 5 cut(s) 170, 549, 639, 1006, 1045
BmrFI CCNGG 3 cut(s) 573, 1193, 1406
BmsI GCATC 4 cut(s) 880, 948, 1027, 1228
BoxI GACNNNNGTC 1 cut(s) 1114
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 785, 817
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 148, 787, 1111
BpuMI CCSGG 2 cut(s) 1193, 1406
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 2 cut(s) 122, 1048
BsaJI CCNNGG 3 cut(s) 383, 986, 1066
BsaWI WCCGGW 2 cut(s) 536, 544
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 793, 1001
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 1314
Bse8I GATNNNNATC 2 cut(s) 122, 1048
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 383, 986, 1066
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 2 cut(s) 122, 1048
BseLI CCNNNNNNNGG 3 cut(s) 634, 793, 1001
BseMI GCAATG 1 cut(s) 1314
BseMII CTCAG 2 cut(s) 543, 795
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 3 cut(s) 457, 580, 1032
BseYI CCCAGC 1 cut(s) 140
BsiSI CCGG 4 cut(s) 537, 545, 1192, 1406
BslFI GGGAC 3 cut(s) 480, 721, 1018
BslI CCNNNNNNNGG 3 cut(s) 634, 793, 1001
BsmFI GGGAC 3 cut(s) 480, 721, 1018
BsmI GAATGC 1 cut(s) 913
Bsp1407I TGTACA 1 cut(s) 1160
BspACI CCGC 2 cut(s) 970, 1321
BspCNI CTCAG 2 cut(s) 544, 796
BspHI TCATGA 1 cut(s) 1347
BspLI GGNNCC 5 cut(s) 170, 549, 639, 1006, 1045
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 8 cut(s) 163, 176, 804, 1038, 1051, 1160, 1183, 1396
BsrDI GCAATG 1 cut(s) 1314
BsrGI TGTACA 1 cut(s) 1160
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 383, 986, 1066
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 3 cut(s) 383, 986, 1066
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 523, 712
Bst6I CTCTTC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 1160
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 4 cut(s) 156, 552, 655, 804
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 1 cut(s) 751
BstMWI GCNNNNNNNGC 2 cut(s) 1029, 1238
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 2 cut(s) 698, 985
BstPAI GACNNNNGTC 1 cut(s) 1114
BstSCI CCNGG 3 cut(s) 571, 1191, 1404
BstSFI CTRYAG 2 cut(s) 471, 600
BstV1I GCAGC 3 cut(s) 457, 580, 1032
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 7 cut(s) 168, 181, 796, 1043, 1147, 1165, 1188
BstYI RGATCY 7 cut(s) 168, 181, 796, 1043, 1147, 1165, 1188
BsuI GTATCC 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 909
BtsCI GGATG 1 cut(s) 751
BtsI GCAGTG 1 cut(s) 1039
BtsIMutI CAGTG 1 cut(s) 1039
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 1347
Cfr13I GGNCC 2 cut(s) 647, 1005
CseI GACGC 2 cut(s) 346, 1313
Csp6I GTAC 3 cut(s) 214, 346, 1161
CviAII CATG 7 cut(s) 350, 368, 695, 742, 982, 1246, 1348
CviQI GTAC 3 cut(s) 214, 346, 1161
DdeI CTNAG 4 cut(s) 156, 552, 655, 804
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 383, 986, 1066
Eco47I GGWCC 2 cut(s) 647, 1005
Eco57I CTGAAG 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 383, 986, 1066
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 3 cut(s) 383, 986, 1066
FaeI CATG 7 cut(s) 353, 371, 698, 745, 985, 1249, 1351
FalI AAGNNNNNCTT 4 cut(s) 484, 516, 1271, 1303
FaqI GGGAC 3 cut(s) 480, 721, 1018
FatI CATG 7 cut(s) 349, 367, 694, 741, 981, 1245, 1347
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 2 cut(s) 51, 1356
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 3 cut(s) 471, 569, 1021
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 3 cut(s) 471, 569, 1021
FspBI CTAG 1 cut(s) 165
GluI GCNGC 3 cut(s) 471, 569, 1021
GsaI CCCAGC 1 cut(s) 144
HapII CCGG 4 cut(s) 537, 545, 1192, 1406
HgaI GACGC 2 cut(s) 346, 1313
Hin1II CATG 7 cut(s) 353, 371, 698, 745, 985, 1249, 1351
HinfI GANTC 7 cut(s) 130, 361, 512, 771, 934, 1136, 1256
HpaII CCGG 4 cut(s) 537, 545, 1192, 1406
HphI GGTGA 4 cut(s) 476, 1222, 1279, 1420
Hpy166II GTNNAC 3 cut(s) 216, 346, 1109
Hpy188I TCNGA 7 cut(s) 15, 36, 178, 207, 511, 663, 805
Hpy188III TCNNGA 6 cut(s) 127, 185, 287, 941, 947, 1348
Hpy8I GTNNAC 3 cut(s) 216, 346, 1109
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 347, 923, 1179
HpyCH4III ACNGT 2 cut(s) 523, 712
HpyCH4IV ACGT 2 cut(s) 682, 867
HpyCH4V TGCA 7 cut(s) 394, 473, 871, 911, 961, 1143, 1241
HpyF10VI GCNNNNNNNGC 2 cut(s) 1029, 1238
HpyF3I CTNAG 4 cut(s) 156, 552, 655, 804
HpySE526I ACGT 2 cut(s) 682, 867
Hsp92II CATG 7 cut(s) 353, 371, 698, 745, 985, 1249, 1351
Ksp22I TGATCA 2 cut(s) 51, 1356
LmnI GCTCC 2 cut(s) 637, 664
Lsp1109I GCAGC 3 cut(s) 457, 580, 1032
LweI GCATC 4 cut(s) 880, 948, 1027, 1228
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 682, 867
MaeIII GTNAC 3 cut(s) 131, 997, 1061
MboII GAAGA 7 cut(s) 190, 191, 253, 346, 746, 1291, 1363
MflI RGATCY 7 cut(s) 168, 181, 796, 1043, 1147, 1165, 1188
MluCI AATT 4 cut(s) 291, 477, 950, 1196
MlyI GAGTC 4 cut(s) 139, 370, 1130, 1265
MmeI TCCRAC 2 cut(s) 59, 811
Mph1103I ATGCAT 1 cut(s) 913
MseI TTAA 4 cut(s) 330, 819, 864, 1199
MslI CAYNNNNRTG 1 cut(s) 1352
MspI CCGG 4 cut(s) 537, 545, 1192, 1406
MspR9I CCNGG 3 cut(s) 573, 1193, 1406
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 2 cut(s) 1029, 1238
NciI CCSGG 2 cut(s) 1193, 1406
NdeI CATATG 1 cut(s) 484
NlaIII CATG 7 cut(s) 353, 371, 698, 745, 985, 1249, 1351
NlaIV GGNNCC 5 cut(s) 170, 549, 639, 1006, 1045
NmuCI GTSAC 2 cut(s) 131, 997
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 698, 985
PagI TCATGA 1 cut(s) 1347
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 3 cut(s) 512, 771, 934
PfoI TCCNGGA 1 cut(s) 1191
PkrI GCNGC 3 cut(s) 472, 570, 1022
PleI GAGTC 4 cut(s) 138, 369, 1130, 1264
PpsI GAGTC 4 cut(s) 138, 369, 1130, 1264
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 647
PshAI GACNNNNGTC 1 cut(s) 1114
PsiI TTATAA 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 5 cut(s) 170, 549, 639, 1006, 1045
PspPI GGNCC 2 cut(s) 647, 1005
PspPPI RGGWCCY 1 cut(s) 647
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 7 cut(s) 168, 181, 796, 1043, 1147, 1165, 1188
RsaI GTAC 3 cut(s) 215, 347, 1162
RsaNI GTAC 3 cut(s) 214, 346, 1161
RseI CAYNNNNRTG 1 cut(s) 1352
SaqAI TTAA 4 cut(s) 330, 819, 864, 1199
SatI GCNGC 3 cut(s) 471, 569, 1021
Sau96I GGNCC 2 cut(s) 647, 1005
SchI GAGTC 4 cut(s) 139, 370, 1130, 1265
ScrFI CCNGG 3 cut(s) 573, 1193, 1406
SfaNI GCATC 4 cut(s) 880, 948, 1027, 1228
SfcI CTRYAG 2 cut(s) 471, 600
SinI GGWCC 2 cut(s) 647, 1005
SmiMI CAYNNNNRTG 1 cut(s) 1352
SmlI CTYRAG 3 cut(s) 127, 766, 1126
SmoI CTYRAG 3 cut(s) 127, 766, 1126
Sse9I AATT 4 cut(s) 291, 477, 950, 1196
SsiI CCGC 2 cut(s) 970, 1321
SspI AATATT 2 cut(s) 719, 1087
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 571, 1191, 1404
StyI CCWWGG 3 cut(s) 383, 986, 1066
TaaI ACNGT 2 cut(s) 523, 712
TaiI ACGT 2 cut(s) 685, 870
TaqI TCGA 1 cut(s) 703
TasI AATT 4 cut(s) 291, 477, 950, 1196
TatI WGTACW 2 cut(s) 213, 1160
TfiI GAWTC 3 cut(s) 512, 771, 934
Tru1I TTAA 4 cut(s) 330, 819, 864, 1199
Tru9I TTAA 4 cut(s) 330, 819, 864, 1199
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 2 cut(s) 131, 997
TseI GCWGC 3 cut(s) 470, 568, 1020
Tsp45I GTSAC 2 cut(s) 131, 997
TspRI CASTG 1 cut(s) 1039
VpaK11BI GGWCC 2 cut(s) 647, 1005
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 1 cut(s) 477
XceI RCATGY 2 cut(s) 698, 985
XmiI GTMKAC 1 cut(s) 1108
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.