AT4G02210
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
973924 .. 976154
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02210.1

Sequence Viewer

Length: 1320 bp
ATGAGCAGTAGAAACGGCAATGAGAGATTAAGAACAGTGTGGACACCTGAAATGGATCAGTATTTCATCGAGCTTATGGTGGAACAAGTTAGAAAAGGCAACAGATTTGAAGATCATTTGTTTAGTAAACGAGCTTGGAAGTTCATGTCTTGTTCCTTCACTGCCAAGTTCAAGTTTCTTTATGGCAAAGATGTTTTGAAAAACAGGCATAAGACATTGAGGAACTTGTTTAAATCTGTGAATAATCTTTTGATAGAAGATGGTTTTAGTTGGGATGATACTAGACAGATGGTTGTTGCTGATAACTGCGTTTGGGATGAGTATCTTAAGATTCATCCTGATTCGAGATCTTTTCGGATAAAGTCTATACCTTGTTACAAAGATCTGTGCTTGGTTTACTCAGATGGAATGTCTGAGCACAAAGCTGAGGAGAGTATTAGTGAGGGAGAATCCAAGACACTGATTCAGGAAGATGATGGGTACAACAGAATATGTGAATCGTCAACAGTCAGGTCTAACTCAAAAGGAAGCAGTGTCACACGGTGCAGGACTACTTGGCATCCTCCAATGGACCGGTATTTCATTGATCTGATGTTGGACCAAGCGAGGAGAGGAAACCAGATTGAAGGTGTTTTCAGGAAACAAGCATGGACTGAGATGGTTAATCTCTTCAATGCGAAATTTGAGTCTAACTTTGATGTTGATGTGTTGAAGAACCGGTATAAGTCTCTGAGAAGACAGTTCAACGCGATCAAGAGTATTCTTCGATCAGATGGGTTTGCTTGGGATAATGAGCGTCAAATGGTTACAGCTGATAATAATGTATGGCAAGACTATATAAAGGCTCATAGAGATGCAAGGCAATTTATGACTCGGCCAATTCCGTACTATAAAGATCTGTGTGTGCTCTGTGGCGATTCTGGGATCGAAGAAAACGAATGCTTTGTAGCTATGGATTGGTTTGACCCTGAAACTGAATTCCAAGAATTTAAGTCCAGTGGTACTACAGATTTGTCTATTTCAGCTGAGGAAGAAGATAGCAACTCTCTTTTGTTTGACCCCAAGAACAAAAGAGATCAACTTGCTAATACTGATACAAGCCCTATAAACCCGAAAAAGCCTCGAGTTGATGAAACCCAAACCATGTCAATAGAGGACACGGTTGAGGCTATTCAAGCGTTACCAGACATGGACGATGAACTTATATTGGATGCTTGTGATCTGCTTGAAGATAAACTCAAGGCGAAAACTTTCTTGGCTCTAGATGTGAAACTACGCAAGAAGTGGTTGTTAAGGAAACTCCGACCTCAAGTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

51.49

Weight (kDa)

5.64

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 14 - 108 2.8e-31 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 185 - 279 1.4e-32 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 388 - 432 9.8e-07 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 749
AclWI GGATC 2 cut(s) 63, 932
AcoI YGGCCR 1 cut(s) 875
AcsI RAATTY 3 cut(s) 680, 977, 986
AdeI CACNNNGTG 1 cut(s) 543
AfaI GTAC 3 cut(s) 482, 887, 1003
AflII CTTAAG 1 cut(s) 326
AgeI ACCGGT 2 cut(s) 573, 717
AgsI TTSAA 9 cut(s) 110, 172, 199, 626, 673, 712, 745, 1175, 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 1238, 1270
AluBI AGCT 6 cut(s) 73, 134, 425, 812, 950, 1025
AluI AGCT 6 cut(s) 73, 134, 425, 812, 950, 1025
Alw21I GWGCWC 2 cut(s) 420, 909
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 2 cut(s) 63, 932
Ama87I CYCGRG 1 cut(s) 1122
AoxI GGCC 1 cut(s) 875
ApoI RAATTY 3 cut(s) 680, 977, 986
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AsiGI ACCGGT 2 cut(s) 573, 717
Asp700I GAANNNNTTC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 571, 598
AvaI CYCGRG 1 cut(s) 1122
AvaII GGWCC 2 cut(s) 571, 598
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 420, 909
BbvCI CCTCAGC 2 cut(s) 426, 1026
BccI CCATC 6 cut(s) 254, 283, 398, 470, 652, 767
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 2 cut(s) 282, 1262
BfmI CTRYAG 1 cut(s) 1005
BfrI CTTAAG 1 cut(s) 326
BglII AGATCT 3 cut(s) 347, 382, 895
Bme18I GGWCC 2 cut(s) 571, 598
BmeT110I CYCGRG 1 cut(s) 1122
BmgT120I GGNCC 2 cut(s) 571, 598
BmsI GCATC 3 cut(s) 568, 844, 1201
BpiI GAAGAC 1 cut(s) 742
Bpu10I CCTNAGC 2 cut(s) 426, 1026
BpuEI CTTGAG 2 cut(s) 1223, 1293
BsaBI GATNNNNATC 1 cut(s) 321
BsaWI WCCGGW 2 cut(s) 573, 717
Bse118I RCCGGY 2 cut(s) 573, 717
Bse1I ACTGG 1 cut(s) 996
Bse3DI GCAATG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 321
BseGI GGATG 5 cut(s) 280, 322, 334, 559, 1216
BseJI GATNNNNATC 1 cut(s) 321
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 6 cut(s) 405, 414, 417, 645, 722, 1017
BseNI ACTGG 1 cut(s) 996
BseRI GAGGAG 2 cut(s) 443, 622
BsgI GTGCAG 1 cut(s) 565
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 1 cut(s) 877
BshTI ACCGGT 2 cut(s) 573, 717
BsiHKAI GWGCWC 2 cut(s) 420, 909
BsiHKCI CYCGRG 1 cut(s) 1122
BsiSI CCGG 2 cut(s) 574, 718
BsmAI GTCTC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 944
BsnI GGCC 1 cut(s) 877
BsoBI CYCGRG 1 cut(s) 1122
Bsp1286I GDGCHC 2 cut(s) 420, 909
BspANI GGCC 1 cut(s) 877
BspCNI CTCAG 6 cut(s) 406, 413, 418, 646, 723, 1018
BspFNI CGCG 1 cut(s) 749
BspPI GGATC 2 cut(s) 63, 932
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 2 cut(s) 573, 717
BsrI ACTGG 1 cut(s) 996
BssAI RCCGGY 2 cut(s) 573, 717
Bst4CI ACNGT 5 cut(s) 37, 508, 543, 741, 1162
Bst6I CTCTTC 1 cut(s) 674
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 6 cut(s) 400, 414, 426, 654, 731, 1026
BstF5I GGATG 5 cut(s) 280, 322, 334, 559, 1216
BstFNI CGCG 1 cut(s) 749
BstMAI GTCTC 1 cut(s) 732
BstMWI GCNNNNNNNGC 1 cut(s) 1175
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 742
BstX2I RGATCY 3 cut(s) 347, 382, 895
BstYI RGATCY 3 cut(s) 347, 382, 895
BsuRI GGCC 1 cut(s) 877
BtsCI GGATG 5 cut(s) 280, 322, 334, 559, 1216
BtsI GCAGTG 2 cut(s) 159, 538
BtsIMutI CAGTG 5 cut(s) 42, 159, 458, 538, 1003
Cfr10I RCCGGY 2 cut(s) 573, 717
Cfr13I GGNCC 2 cut(s) 571, 598
CseI GACGC 1 cut(s) 785
Csp6I GTAC 3 cut(s) 481, 886, 1002
CspAI ACCGGT 2 cut(s) 573, 717
CviAII CATG 4 cut(s) 145, 648, 1144, 1189
CviQI GTAC 3 cut(s) 481, 886, 1002
DdeI CTNAG 6 cut(s) 400, 414, 426, 654, 731, 1026
DraI TTTAAA 1 cut(s) 232
DraIII CACNNNGTG 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 875
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 571, 598
Eco88I CYCGRG 1 cut(s) 1122
EcoRI GAATTC 1 cut(s) 977
FaeI CATG 4 cut(s) 148, 651, 1147, 1192
FatI CATG 4 cut(s) 144, 647, 1143, 1188
FokI GGATG 5 cut(s) 287, 321, 329, 546, 1223
FspBI CTAG 2 cut(s) 282, 1262
HaeIII GGCC 1 cut(s) 877
HapII CCGG 2 cut(s) 574, 718
HgaI GACGC 1 cut(s) 785
Hin1II CATG 4 cut(s) 148, 651, 1147, 1192
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 8 cut(s) 331, 341, 449, 463, 497, 686, 871, 917
HpaII CCGG 2 cut(s) 574, 718
Hpy166II GTNNAC 4 cut(s) 42, 128, 397, 504
Hpy188I TCNGA 7 cut(s) 357, 403, 415, 591, 732, 772, 1304
Hpy188III TCNNGA 6 cut(s) 338, 345, 467, 637, 754, 1262
Hpy8I GTNNAC 4 cut(s) 42, 128, 397, 504
HpyAV CCTTC 2 cut(s) 166, 620
HpyCH4III ACNGT 5 cut(s) 37, 508, 543, 741, 1162
HpyCH4V TGCA 2 cut(s) 546, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 1175
HpyF3I CTNAG 6 cut(s) 400, 414, 426, 654, 731, 1026
Hsp92II CATG 4 cut(s) 148, 651, 1147, 1192
LweI GCATC 3 cut(s) 568, 844, 1201
MaeI CTAG 2 cut(s) 282, 1262
MaeIII GTNAC 5 cut(s) 374, 535, 805, 1179, 1312
MflI RGATCY 3 cut(s) 347, 382, 895
MhlI GDGCHC 2 cut(s) 420, 909
MluCI AATT 5 cut(s) 680, 863, 879, 977, 986
MlyI GAGTC 2 cut(s) 695, 865
MmeI TCCRAC 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 1250
MseI TTAA 6 cut(s) 29, 231, 327, 663, 990, 1292
MslI CAYNNNNRTG 1 cut(s) 852
MspA1I CMGCKG 2 cut(s) 812, 1025
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 574, 718
Mva1269I GAATGC 1 cut(s) 944
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 1 cut(s) 1175
NlaIII CATG 4 cut(s) 148, 651, 1147, 1192
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 535, 1312
PaeR7I CTCGAG 1 cut(s) 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 933
PctI GAATGC 1 cut(s) 944
PdmI GAANNNNTTC 1 cut(s) 1250
PfeI GAWTC 6 cut(s) 331, 341, 449, 463, 497, 917
PinAI ACCGGT 2 cut(s) 573, 717
PleI GAGTC 2 cut(s) 694, 865
PpsI GAGTC 2 cut(s) 694, 865
PspPI GGNCC 2 cut(s) 571, 598
PspXI VCTCGAGB 1 cut(s) 1122
PsuI RGATCY 3 cut(s) 347, 382, 895
PvuII CAGCTG 2 cut(s) 812, 1025
RsaI GTAC 3 cut(s) 482, 887, 1003
RsaNI GTAC 3 cut(s) 481, 886, 1002
RseI CAYNNNNRTG 1 cut(s) 852
SaqAI TTAA 6 cut(s) 29, 231, 327, 663, 990, 1292
Sau96I GGNCC 2 cut(s) 571, 598
SchI GAGTC 2 cut(s) 695, 865
SduI GDGCHC 2 cut(s) 420, 909
SfaNI GCATC 3 cut(s) 568, 844, 1201
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 1122
SinI GGWCC 2 cut(s) 571, 598
SlaI CTCGAG 1 cut(s) 1122
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 4 cut(s) 326, 1122, 1238, 1308
SmoI CTYRAG 4 cut(s) 326, 1122, 1238, 1308
Sse9I AATT 5 cut(s) 680, 863, 879, 977, 986
SspMI CTAG 2 cut(s) 282, 1262
TaaI ACNGT 5 cut(s) 37, 508, 543, 741, 1162
TaqI TCGA 5 cut(s) 69, 344, 766, 927, 1123
TasI AATT 5 cut(s) 680, 863, 879, 977, 986
TfiI GAWTC 6 cut(s) 331, 341, 449, 463, 497, 917
Tru1I TTAA 6 cut(s) 29, 231, 327, 663, 990, 1292
Tru9I TTAA 6 cut(s) 29, 231, 327, 663, 990, 1292
TscAI CASTG 5 cut(s) 42, 166, 465, 538, 1003
TseFI GTSAC 2 cut(s) 535, 1312
Tsp45I GTSAC 2 cut(s) 535, 1312
TspDTI ATGAA 6 cut(s) 55, 133, 323, 571, 1146, 1212
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 5 cut(s) 42, 166, 465, 538, 1003
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 571, 598
XapI RAATTY 3 cut(s) 680, 977, 986
XbaI TCTAGA 1 cut(s) 1261
XhoI CTCGAG 1 cut(s) 1122
XmnI GAANNNNTTC 1 cut(s) 1250
XspI CTAG 2 cut(s) 282, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.