MD03G1298700.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
37446983 .. 37449947
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1298700.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGATCGATATTTCATTGATCTCATGTTAGAGCAAGTTGGCAAAGGAAATAAATTTGATGATCATTTATTTAGCAAGCGTGCCTGGAAGCATATGGCATCCTTGTTCAATGCAAAATTCAACTTCCCCTATGAAAAAGATGTTCTGAAAAATCGGCACAAAACACTAAGGAATTTGTACAAGGCTGTAAAAATTCTCCTTCATCAGAGGGGATTCAGTTGGGATGAAACGCGACAAATGGTGACTGCTGATAATAATGCCTGGGATGGATATATTAAGGTACACCCAGATGCACGGTCATTCAGAATAAAAACCATCCCTTATTATCGTGATTTGTGTTTGATATATGGCGATGCAGCATTCGAAGAGAAAGGTGATAATGTTCCTGAGGAGTCATCACATTCAAGCGAGACTGGTAAAACAGCAGCCACACAGCCGACGAACGTTAATCAGGACAAAGCAGAGGCTCTTCGTGATATCATTGTTGGTGAGGATTATGGAGTCGCTATCTCGGAAAAATGTTTTGATGTTAGCCAGCATGCTATTACAAGTGTTCCTGAAATCACAGCTAGTAATCGCTCCAGAACTTACTGGCAGCCGCCCATGGACTGTTATTTCATTGACCTTTTGCAAGAACAGGTGCGGAAAGGCAGCAGGGTTGATGGTGTGTTTCGTAAACAAGCTTGGAAGGAGATGATAGCATTATTCAATGCTAAGTTTGGCTTTAATTATGATATGGATGTTCTTAAAAATCGGCACAAAACTCTGAAAAGGCAATATAATGTTATAAAGAATCTACTTGAATTAGATGGCTTTTGTTGGGATGATAAGCGCCATATGGTGACAGCTGATGATTATGTTTGGCAGGATTATATTAAGGAACATACTGATGCAAGGCAGTTCATGACCCGACCTGTCCCATATTATAAAGATTTATGCATGATATGTGATCCAAGTCTTGATGACAGAGACTGCTATTCAGGTCAAGATGTAGAGCAACAAAATCAAGTTGAAGGCGCCAAGTTTTGTGGAGCATTAACTAGTCTTCAGTCTGCATCTACATCAGTTTCCACTGAGGATGATGTTGTTGAGGTGCAGGAGTCGAGCCTTATGTGCCATAAGAAAAGGCGTCAACTAGAAAACTGCTCAAATCAGGCTCATCCAAAAAGATCCCGAGAAGCAGATGGTGGCATGGCTAGTGCTCTTCGTGAGATGGCATCTGCTGTTTCGTTGCTGTCAGATAAGAAGAGAAATGATGCGAACATGAACTCTGGCTCAATAGAAAGTGTGATTGAAGCAATACAAGCATTACCAGACATGGACGAAGACCTCGTGTTAGATGCTTGTGATTTGCTAGAGGATGAAAAGAAGGCAAAAACATTTATGGCATTGGGTGTTAAATTACGAAAGAAGTGGTTAACGAGGAAACTTCGGCCGCAGTTGGCAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

55.63

Weight (kDa)

6.34

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 91 1.5e-29 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 197 - 291 1.1e-31 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 431 - 476 1.2e-06 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 788, 927
AccB1I GGYRCC 1 cut(s) 1016
AccII CGCG 1 cut(s) 232
AciI CCGC 3 cut(s) 599, 643, 1436
AclI AACGTT 1 cut(s) 444
AclWI GGATC 3 cut(s) 12, 944, 1164
AcoI YGGCCR 1 cut(s) 1433
AcsI RAATTY 4 cut(s) 53, 116, 172, 192
AcuI CTGAAG 1 cut(s) 1031
AcyI GRCGYC 2 cut(s) 1017, 1129
AfaI GTAC 2 cut(s) 179, 282
AgsI TTSAA 7 cut(s) 109, 121, 405, 709, 803, 1013, 1295
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 2 cut(s) 83, 260
AluBI AGCT 3 cut(s) 569, 683, 848
AluI AGCT 3 cut(s) 569, 683, 848
Alw21I GWGCWC 1 cut(s) 1204
Alw26I GTCTC 2 cut(s) 404, 963
AlwI GGATC 3 cut(s) 12, 944, 1164
AlwNI CAGNNNCTG 1 cut(s) 972
Ama87I CYCGRG 1 cut(s) 1173
AoxI GGCC 1 cut(s) 1433
ApeKI GCWGC 4 cut(s) 356, 425, 595, 651
ApoI RAATTY 4 cut(s) 53, 116, 172, 192
AspLEI GCGC 2 cut(s) 834, 1019
AsuHPI GGTGA 4 cut(s) 253, 386, 500, 853
AsuII TTCGAA 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 1173
AxyI CCTNAGG 1 cut(s) 387
BanI GGYRCC 1 cut(s) 1016
BauI CACGAG 1 cut(s) 1331
BbsI GAAGAC 2 cut(s) 1037, 1332
Bbv12I GWGCWC 1 cut(s) 1204
BbvI GCAGC 4 cut(s) 368, 437, 607, 663
BccI CCATC 6 cut(s) 260, 323, 656, 803, 1178, 1207
BciT130I CCWGG 2 cut(s) 85, 262
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 404, 963
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 5 cut(s) 570, 1041, 1136, 1197, 1355
BfoI RGCGCY 2 cut(s) 835, 1020
BisI GCNGC 6 cut(s) 357, 426, 596, 599, 652, 1436
BlsI GCNGC 6 cut(s) 358, 427, 597, 600, 653, 1437
Bme1390I CCNGG 2 cut(s) 85, 262
BmeT110I CYCGRG 1 cut(s) 1173
BmiI GGNNCC 1 cut(s) 1018
BmrFI CCNGG 2 cut(s) 85, 262
BmsI GCATC 8 cut(s) 107, 280, 343, 880, 1064, 1226, 1246, 1330
BpiI GAAGAC 2 cut(s) 1037, 1332
BpmI CTGGAG 1 cut(s) 565
Bpu14I TTCGAA 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 7
BsaHI GRCGYC 2 cut(s) 1017, 1129
BsaJI CCNNGG 2 cut(s) 261, 603
Bse1I ACTGG 2 cut(s) 418, 596
Bse21I CCTNAGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 85, 262
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 261, 603
BseGI GGATG 9 cut(s) 98, 229, 271, 315, 745, 829, 1084, 1159, 1366
BseMII CTCAG 2 cut(s) 378, 1065
BseNI ACTGG 2 cut(s) 418, 596
BseRI GAGGAG 1 cut(s) 404
BseX3I CGGCCG 1 cut(s) 1433
BseXI GCAGC 4 cut(s) 368, 437, 607, 663
BsgI GTGCAG 1 cut(s) 1115
Bsh1236I CGCG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 1436
BshFI GGCC 1 cut(s) 1435
BshNI GGYRCC 1 cut(s) 1016
BshVI ATCGAT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 1436
BsiHKAI GWGCWC 1 cut(s) 1204
BsiHKCI CYCGRG 1 cut(s) 1173
BslFI GGGAC 1 cut(s) 902
BsmAI GTCTC 2 cut(s) 404, 963
BsmFI GGGAC 1 cut(s) 902
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 1435
BsoBI CYCGRG 1 cut(s) 1173
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 1204
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 5 cut(s) 4, 19, 61, 949, 1169
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 3 cut(s) 599, 643, 1436
BspANI GGCC 1 cut(s) 1435
BspCNI CTCAG 2 cut(s) 379, 1066
BspDI ATCGAT 1 cut(s) 7
BspFNI CGCG 1 cut(s) 232
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 1 cut(s) 1018
BspPI GGATC 3 cut(s) 12, 944, 1164
BspQI GCTCTTC 2 cut(s) 474, 1209
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 1016
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 418, 596
BssECI CCNNGG 2 cut(s) 261, 603
BssMI GATC 5 cut(s) 4, 19, 61, 949, 1169
BssNI GRCGYC 2 cut(s) 1017, 1129
BssSI CACGAG 1 cut(s) 1331
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 1331
Bst2UI CCWGG 2 cut(s) 85, 262
Bst4CI ACNGT 2 cut(s) 297, 611
Bst6I CTCTTC 4 cut(s) 360, 474, 1209, 1241
BstACI GRCGYC 2 cut(s) 1017, 1129
BstAUI TGTACA 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 4 cut(s) 77, 81, 536, 540
BstDEI CTNAG 4 cut(s) 167, 387, 714, 1074
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 9 cut(s) 98, 229, 271, 315, 745, 829, 1084, 1159, 1366
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 2 cut(s) 835, 1020
BstHHI GCGC 2 cut(s) 834, 1019
BstKTI GATC 5 cut(s) 7, 22, 64, 952, 1172
BstMAI GTCTC 2 cut(s) 404, 963
BstMBI GATC 5 cut(s) 4, 19, 61, 949, 1169
BstMCI CGRYCG 1 cut(s) 1436
BstMWI GCNNNNNNNGC 2 cut(s) 1113, 1304
BstNI CCWGG 2 cut(s) 85, 262
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 83, 260
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 4 cut(s) 368, 437, 607, 663
BstV2I GAAGAC 2 cut(s) 1037, 1332
BstX2I RGATCY 1 cut(s) 1169
BstYI RGATCY 1 cut(s) 1169
BstZI CGGCCG 1 cut(s) 1433
Bsu15I ATCGAT 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 1 cut(s) 1435
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 9 cut(s) 98, 229, 271, 315, 745, 829, 1084, 1159, 1366
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 4 cut(s) 77, 81, 536, 540
CaiI CAGNNNCTG 1 cut(s) 972
CciI TCATGA 1 cut(s) 903
CfoI GCGC 2 cut(s) 834, 1019
ClaI ATCGAT 1 cut(s) 7
CseI GACGC 1 cut(s) 1118
Csp6I GTAC 2 cut(s) 178, 281
CspCI CAANNNNNGTGG 2 cut(s) 1009, 1044
CviAII CATG 8 cut(s) 25, 539, 604, 904, 940, 1192, 1264, 1318
CviQI GTAC 2 cut(s) 178, 281
DdeI CTNAG 4 cut(s) 167, 387, 714, 1074
DinI GGCGCC 1 cut(s) 1018
DpnI GATC 5 cut(s) 6, 21, 63, 951, 1171
DpnII GATC 5 cut(s) 4, 19, 61, 949, 1169
EaeI YGGCCR 1 cut(s) 1433
EagI CGGCCG 1 cut(s) 1433
Eam1104I CTCTTC 4 cut(s) 360, 474, 1209, 1241
EarI CTCTTC 4 cut(s) 360, 474, 1209, 1241
EclXI CGGCCG 1 cut(s) 1433
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 1 cut(s) 478
Eco52I CGGCCG 1 cut(s) 1433
Eco57I CTGAAG 1 cut(s) 1031
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 1173
EcoRII CCWGG 2 cut(s) 83, 260
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 941
EgeI GGCGCC 1 cut(s) 1018
EheI GGCGCC 1 cut(s) 1018
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 8 cut(s) 28, 542, 607, 907, 943, 1195, 1267, 1321
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 1 cut(s) 902
FatI CATG 8 cut(s) 24, 538, 603, 903, 939, 1191, 1263, 1317
FauNDI CATATG 2 cut(s) 93, 837
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 6 cut(s) 357, 426, 596, 599, 652, 1436
FokI GGATG 9 cut(s) 85, 236, 278, 302, 752, 836, 1091, 1146, 1373
Fsp4HI GCNGC 6 cut(s) 357, 426, 596, 599, 652, 1436
FspBI CTAG 5 cut(s) 570, 1041, 1136, 1197, 1355
GlaI GCGC 2 cut(s) 833, 1018
GluI GCNGC 6 cut(s) 357, 426, 596, 599, 652, 1436
GsuI CTGGAG 1 cut(s) 565
HaeII RGCGCY 2 cut(s) 835, 1020
HaeIII GGCC 1 cut(s) 1435
HgaI GACGC 1 cut(s) 1118
HhaI GCGC 2 cut(s) 834, 1019
Hin1I GRCGYC 2 cut(s) 1017, 1129
Hin1II CATG 8 cut(s) 28, 542, 607, 907, 943, 1195, 1267, 1321
Hin6I GCGC 2 cut(s) 832, 1017
HinP1I GCGC 2 cut(s) 832, 1017
HincII GTYRAC 2 cut(s) 1133, 1419
HindII GTYRAC 2 cut(s) 1133, 1419
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 5 cut(s) 213, 392, 501, 793, 1100
HpaI GTTAAC 1 cut(s) 1419
HphI GGTGA 4 cut(s) 253, 386, 500, 853
Hpy166II GTNNAC 4 cut(s) 283, 677, 1133, 1419
Hpy188I TCNGA 6 cut(s) 147, 207, 305, 514, 768, 1240
Hpy8I GTNNAC 4 cut(s) 283, 677, 1133, 1419
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 4 cut(s) 209, 682, 1007, 1363
HpyCH4III ACNGT 2 cut(s) 297, 611
HpyCH4IV ACGT 2 cut(s) 444, 1448
HpyCH4V TGCA 8 cut(s) 113, 293, 356, 631, 893, 939, 1055, 1096
HpyF10VI GCNNNNNNNGC 2 cut(s) 1113, 1304
HpyF3I CTNAG 4 cut(s) 167, 387, 714, 1074
HpySE526I ACGT 2 cut(s) 444, 1448
Hsp92I GRCGYC 2 cut(s) 1017, 1129
Hsp92II CATG 8 cut(s) 28, 542, 607, 907, 943, 1195, 1267, 1321
HspAI GCGC 2 cut(s) 832, 1017
KasI GGCGCC 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 1419
Kzo9I GATC 5 cut(s) 4, 19, 61, 949, 1169
LguI GCTCTTC 2 cut(s) 474, 1209
LmnI GCTCC 2 cut(s) 584, 1031
Lsp1109I GCAGC 4 cut(s) 368, 437, 607, 663
LweI GCATC 8 cut(s) 107, 280, 343, 880, 1064, 1226, 1246, 1330
MaeI CTAG 5 cut(s) 570, 1041, 1136, 1197, 1355
MaeII ACGT 2 cut(s) 444, 1448
MaeIII GTNAC 2 cut(s) 241, 841
MalI GATC 5 cut(s) 6, 21, 63, 951, 1171
MboI GATC 5 cut(s) 4, 19, 61, 949, 1169
MboII GAAGA 6 cut(s) 377, 461, 1037, 1196, 1258, 1337
MflI RGATCY 1 cut(s) 1169
MhlI GDGCHC 1 cut(s) 1204
MluCI AATT 7 cut(s) 53, 116, 172, 192, 727, 803, 1400
Mly113I GGCGCC 1 cut(s) 1017
MlyI GAGTC 3 cut(s) 401, 510, 1109
MnlI CCTC 9 cut(s) 201, 382, 457, 484, 1069, 1084, 1340, 1351, 1416
Mph1103I ATGCAT 1 cut(s) 941
MseI TTAA 8 cut(s) 276, 447, 726, 747, 876, 1037, 1398, 1418
MslI CAYNNNNRTG 2 cut(s) 288, 888
MspA1I CMGCKG 1 cut(s) 848
MspR9I CCNGG 2 cut(s) 85, 262
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 85, 262
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 1113, 1304
NarI GGCGCC 1 cut(s) 1017
NcoI CCATGG 1 cut(s) 603
NdeI CATATG 2 cut(s) 93, 837
NdeII GATC 5 cut(s) 4, 19, 61, 949, 1169
NlaIII CATG 8 cut(s) 28, 542, 607, 907, 943, 1195, 1267, 1321
NlaIV GGNNCC 1 cut(s) 1018
NmuCI GTSAC 2 cut(s) 241, 841
NsiI ATGCAT 1 cut(s) 941
NspI RCATGY 1 cut(s) 542
NspV TTCGAA 1 cut(s) 363
PaeI GCATGC 1 cut(s) 542
PagI TCATGA 1 cut(s) 903
PciSI GCTCTTC 2 cut(s) 474, 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 1329
PctI GAATGC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 213, 793
PkrI GCNGC 6 cut(s) 358, 427, 597, 600, 653, 1437
PleI GAGTC 3 cut(s) 400, 509, 1108
PluTI GGCGCC 1 cut(s) 1020
PpsI GAGTC 3 cut(s) 400, 509, 1108
PsiI TTATAA 2 cut(s) 788, 927
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 83, 260
PspGI CCWGG 2 cut(s) 83, 260
PspN4I GGNNCC 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 972
PsuI RGATCY 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 848
RsaI GTAC 2 cut(s) 179, 282
RsaNI GTAC 2 cut(s) 178, 281
RseI CAYNNNNRTG 2 cut(s) 288, 888
SapI GCTCTTC 2 cut(s) 474, 1209
SaqAI TTAA 8 cut(s) 276, 447, 726, 747, 876, 1037, 1398, 1418
SatI GCNGC 6 cut(s) 357, 426, 596, 599, 652, 1436
Sau3AI GATC 5 cut(s) 4, 19, 61, 949, 1169
SchI GAGTC 3 cut(s) 401, 510, 1109
ScrFI CCNGG 2 cut(s) 85, 262
SduI GDGCHC 1 cut(s) 1204
SfaNI GCATC 8 cut(s) 107, 280, 343, 880, 1064, 1226, 1246, 1330
SfoI GGCGCC 1 cut(s) 1018
SfuI TTCGAA 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 288, 888
SpeI ACTAGT 1 cut(s) 1040
SphI GCATGC 1 cut(s) 542
Sse9I AATT 7 cut(s) 53, 116, 172, 192, 727, 803, 1400
SsiI CCGC 3 cut(s) 599, 643, 1436
SspDI GGCGCC 1 cut(s) 1016
SspMI CTAG 5 cut(s) 570, 1041, 1136, 1197, 1355
StyD4I CCNGG 2 cut(s) 83, 260
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 297, 611
TaiI ACGT 2 cut(s) 447, 1451
TaqI TCGA 3 cut(s) 7, 363, 1103
TasI AATT 7 cut(s) 53, 116, 172, 192, 727, 803, 1400
TatI WGTACW 1 cut(s) 177
TauI GCSGC 2 cut(s) 601, 1438
TfiI GAWTC 2 cut(s) 213, 793
Tru1I TTAA 8 cut(s) 276, 447, 726, 747, 876, 1037, 1398, 1418
Tru9I TTAA 8 cut(s) 276, 447, 726, 747, 876, 1037, 1398, 1418
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 2 cut(s) 241, 841
TseI GCWGC 4 cut(s) 356, 425, 595, 651
Tsp45I GTSAC 2 cut(s) 241, 841
TspDTI ATGAA 8 cut(s) 4, 147, 191, 240, 607, 892, 1280, 1377
TspRI CASTG 1 cut(s) 1078
XapI RAATTY 4 cut(s) 53, 116, 172, 192
XceI RCATGY 1 cut(s) 542
XspI CTAG 5 cut(s) 570, 1041, 1136, 1197, 1355
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.