Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021903

Physical Location & Seq

Genomic Coordinates Forward (+)

1887462 .. 1889255

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACGTTAGAGAGTTACGCCGGCGATGTTCACACGGTACCACAATCGGAGAACTCGATGGAGGAGAGAGGCGGCGGTGAGCTTTTCGTGCCACCTCTTAACTTCGCTATGGTCGATAATGGAATTTTCCGTTCTGGTTTTCCTGAACCCGTCAGTTTCAGCTTTCTCCAGTCTTTGCGTCTCAAATCCATCATATATTTGTGTCCTGAGGCATATCCAGAGGTGAATAGAGAGTTTGCAAAATCAAATGGGATCCAAGTTTTTCAATTTGGAATTGAAAGATGCAAGGAACCATTTGTTAATATCCCTGACGAGGTAATCCGAGAAGCCTTACAAGTACTTCTAGATACAGAGAATCATCCTGTCTTGATTCATTGCAAAAGTGGAAAGCATCGGACGGGATGTCTTGTAGGTTGTGTGAGGAAGATTCAAAGATGGTGTTTGTCTTCTATCTTCGACGAGTACCAAAGATTCGCAGCTGCGAAAGCTAGAATCTCAGACCAGAGATTCATGGAGCTCTTTGACATCTCCAATCTAAAGCATACACCACTTTCCTTCTCATGCTCCAAGAGGTATACTAATACTATTGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1900424 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

198

Amino Acids

22.64

Weight (kDa)

6.22

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	30 - 183	5.1e-61	Tyrosine phosphatase family
PTP-NADK	PF22741	78 - 167	1e-07	DSP-PTPase phosphatase fused to NAD+ Kinase
Y_phosphatase3	PF13350	101 - 161	1.9e-07	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03960
malus_domestica	MD05G1354200.v1.1
prunus_persica	Prupe.4G013600_v2.0.a1
pyrus_communis	pycom10g27820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	2 cut(s)	72, 75
AclWI	GGATC	2 cut(s)	247, 260
AcsI	RAATTY	1 cut(s)	123
AfaI	GTAC	3 cut(s)	39, 339, 464
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	266, 278, 431
AhdI	GACNNNNNGTC	1 cut(s)	402
AluBI	AGCT	5 cut(s)	82, 162, 479, 488, 517
AluI	AGCT	5 cut(s)	82, 162, 479, 488, 517
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	247, 260
ApeKI	GCWGC	2 cut(s)	476, 479
ApoI	RAATTY	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	89, 235
AxyI	CCTNAGG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	466, 488
BccI	CCATC	3 cut(s)	52, 197, 429
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	344, 489
BisI	GCNGC	3 cut(s)	73, 477, 480
BlsI	GCNGC	3 cut(s)	74, 478, 481
BmcAI	AGTACT	1 cut(s)	339
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	39, 254, 291
BmsI	GCATC	2 cut(s)	272, 400
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	358, 407
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	198, 510
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	466, 488
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	72, 75
BspCNI	CTCAG	2 cut(s)	199, 509
BspLI	GGNNCC	3 cut(s)	39, 254, 291
BspPI	GGATC	2 cut(s)	247, 260
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	1 cut(s)	252
BssNAI	GTATAC	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	207, 496
BstF5I	GGATG	2 cut(s)	358, 407
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 485
BstV1I	GCAGC	2 cut(s)	466, 488
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BstZ17I	GTATAC	1 cut(s)	576
Bsu36I	CCTNAGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	358, 407
Cac8I	GCNNGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	20
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	38, 338, 463
CviAII	CATG	2 cut(s)	511, 561
CviJI	RGCY	6 cut(s)	82, 162, 329, 479, 488, 517
CviKI_1	RGCY	6 cut(s)	82, 162, 329, 479, 488, 517
CviQI	GTAC	3 cut(s)	38, 338, 463
DdeI	CTNAG	2 cut(s)	207, 496
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	517
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	514, 564
FaiI	YATR	8 cut(s)	110, 194, 196, 214, 512, 543, 562, 576
FatI	CATG	2 cut(s)	510, 560
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	3 cut(s)	73, 477, 480
FokI	GGATG	2 cut(s)	345, 414
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	3 cut(s)	73, 477, 480
FspBI	CTAG	2 cut(s)	344, 489
GluI	GCNGC	3 cut(s)	73, 477, 480
GsuI	CTGGAG	1 cut(s)	152
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	514, 564
HinfI	GANTC	6 cut(s)	355, 370, 427, 471, 492, 507
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	89, 235
Hpy166II	GTNNAC	2 cut(s)	31, 576
Hpy188I	TCNGA	4 cut(s)	49, 323, 396, 499
Hpy188III	TCNNGA	5 cut(s)	143, 206, 218, 344, 367
Hpy8I	GTNNAC	2 cut(s)	31, 576
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	3 cut(s)	239, 285, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 485
HpyF3I	CTNAG	2 cut(s)	207, 496
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	514, 564
KpnI	GGTACC	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	514, 569
LpnPI	CCDG	9 cut(s)	34, 120, 156, 182, 219, 231, 321, 375, 515
Lsp1109I	GCAGC	2 cut(s)	466, 488
LweI	GCATC	2 cut(s)	272, 400
MaeI	CTAG	2 cut(s)	344, 489
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	3 cut(s)	436, 438, 445
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	3 cut(s)	123, 266, 273
MnlI	CCTC	8 cut(s)	55, 62, 105, 202, 214, 307, 414, 564
MreI	CGCCGGCG	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	20
MseI	TTAA	2 cut(s)	99, 300
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	88, 485
NaeI	GCCGGC	1 cut(s)	22
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	514, 564
NlaIV	GGNNCC	3 cut(s)	39, 254, 291
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 111
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	6 cut(s)	355, 370, 427, 471, 492, 507
PkrI	GCNGC	3 cut(s)	74, 478, 481
Psp124BI	GAGCTC	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	39, 254, 291
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	3 cut(s)	39, 339, 464
RsaNI	GTAC	3 cut(s)	38, 338, 463
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	99, 300
SatI	GCNGC	3 cut(s)	73, 477, 480
Sau3AI	GATC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	2 cut(s)	272, 400
SgrAI	CRCCGGYG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	123, 266, 273
SsiI	CCGC	2 cut(s)	72, 75
SspMI	CTAG	2 cut(s)	344, 489
SstI	GAGCTC	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	56, 114, 456
TasI	AATT	3 cut(s)	123, 266, 273
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	6 cut(s)	355, 370, 427, 471, 492, 507
Tru1I	TTAA	2 cut(s)	99, 300
Tru9I	TTAA	2 cut(s)	99, 300
TseI	GCWGC	2 cut(s)	476, 479
TspDTI	ATGAA	2 cut(s)	362, 499
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	575
XspI	CTAG	2 cut(s)	344, 489
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.