Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0021903

Physical Location & Seq

Genomic Coordinates Reverse (-)

47077199 .. 47079985

Gene Structure 2787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1354200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAAATAGAGAGCGGGGAGCAGGAGGTCTCCACGGCGTCGCCGGTGGCGAAGGCTCCGGAGATCGGAGACGAGAATGAGAGGTGCGGAGAGGCGTTCGTGCCGCCTCTGAACTTCGCGATGGTCGACAATGGCGTGTTTAGGTCCGGCTTCCCTCATTCCCCCAATTTCAGCTTCTTGAAATCCCTCGGCCTCCGTTCCGTCATATATTTGTGCCCGGAGCCGTATCCGGAGGAGAACAAAGAGTTTATGAGAGCAAATGGGATTAGGCTTTTCCAGTTTGGGATCGATGGCTCTCAGGAACCTTACGTGAAAATCCCGGAGCACACAATTCGTGAAGCATTAAGAGTTGTCCTTGATGTAAGAAACCACCCACTCCTGATCCATTGCAAGCGAGGGAAGCACCGGACGGGCTGTCTTGTGGGATGCTTAAGAAGATTGCAAAGATGGTGCCTGACCTCAATCTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAATCTCGAGTTTCGGATCAGAGGTTCATCGAAGCGTTTGATATTTCAAGCTTCATGAACTGTCCAATGTCGTTTTCGTGTTCAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1900424 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

196

Amino Acids

22.23

Weight (kDa)

8.43

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	34 - 184	2.3e-62	Tyrosine phosphatase family
PTP-NADK	PF22741	89 - 149	7.3e-07	DSP-PTPase phosphatase fused to NAD+ Kinase
Y_phosphatase3	PF13350	103 - 163	6.6e-07	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03960
malus_domestica	MD05G1354200.v1.1
prunus_persica	Prupe.4G013600_v2.0.a1
pyrus_communis	pycom10g27820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	2 cut(s)	58, 229
AciI	CCGC	3 cut(s)	15, 87, 104
AclWI	GGATC	3 cut(s)	293, 376, 519
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflII	CTTAAG	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	181, 543, 579
AhdI	GACNNNNNGTC	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	4 cut(s)	158, 190, 553, 585
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	174, 491, 546
AluI	AGCT	3 cut(s)	174, 491, 546
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	34, 63
AlwI	GGATC	3 cut(s)	293, 376, 519
Ama87I	CYCGRG	1 cut(s)	501
Aor13HI	TCCGGA	2 cut(s)	58, 229
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	488, 491
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	2 cut(s)	218, 320
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	478, 500
BccI	CCATC	3 cut(s)	115, 284, 441
BceAI	ACGGC	2 cut(s)	51, 208
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	218, 320
BcoDI	GTCTC	2 cut(s)	34, 63
BfrI	CTTAAG	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	3 cut(s)	104, 489, 492
BlsI	GCNGC	3 cut(s)	105, 490, 493
Bme1390I	CCNGG	2 cut(s)	218, 320
Bme18I	GGWCC	1 cut(s)	144
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	4 cut(s)	57, 222, 303, 452
BmrFI	CCNGG	2 cut(s)	218, 320
BmsI	GCATC	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	218, 320
Bsa29I	ATCGAT	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	33, 187
BsaWI	WCCGGW	3 cut(s)	58, 229, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	385
BseAI	TCCGGA	2 cut(s)	58, 229
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	33, 187
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	478, 500
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	7 cut(s)	44, 59, 147, 218, 230, 320, 406
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	34, 63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	218, 327
Bsp13I	TCCGGA	2 cut(s)	58, 229
Bsp143I	GATC	4 cut(s)	63, 285, 381, 511
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	3 cut(s)	15, 87, 104
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	288
BspEI	TCCGGA	2 cut(s)	58, 229
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	4 cut(s)	57, 222, 303, 452
BspPI	GGATC	3 cut(s)	293, 376, 519
BspT107I	GGYRCC	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	33, 187
BssMI	GATC	4 cut(s)	63, 285, 381, 511
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	66, 288, 384, 514
BstMAI	GTCTC	2 cut(s)	34, 63
BstMBI	GATC	4 cut(s)	63, 285, 381, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	216, 318
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	478, 500
Bsu15I	ATCGAT	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	431
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	65, 287, 383, 513
DpnII	GATC	4 cut(s)	63, 285, 381, 511
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1105I	GACNNNNNGTC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	553
FaiI	YATR	4 cut(s)	206, 208, 251, 551
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	8
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	104, 489, 492
FokI	GGATG	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	104, 489, 492
GluI	GCNGC	3 cut(s)	104, 489, 492
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	7 cut(s)	44, 59, 147, 218, 230, 320, 406
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	544
HpaII	CCGG	7 cut(s)	44, 59, 147, 218, 230, 320, 406
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	68, 111, 511, 516
Hpy188III	TCNNGA	9 cut(s)	59, 118, 178, 230, 299, 335, 379, 501, 550
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	390, 442, 488, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	553
Kpn2I	TCCGGA	2 cut(s)	58, 229
Kzo9I	GATC	4 cut(s)	63, 285, 381, 511
LmnI	GCTCC	4 cut(s)	19, 61, 220, 322
Lsp1109I	GCAGC	2 cut(s)	478, 500
LweI	GCATC	1 cut(s)	416
MaeII	ACGT	1 cut(s)	309
MalI	GATC	4 cut(s)	65, 287, 383, 513
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	4 cut(s)	63, 285, 381, 511
MboII	GAAGA	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	218, 327
MluCI	AATT	2 cut(s)	166, 330
MroI	TCCGGA	2 cut(s)	58, 229
MseI	TTAA	2 cut(s)	344, 431
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	430
MspI	CCGG	7 cut(s)	44, 59, 147, 218, 230, 320, 406
MspR9I	CCNGG	2 cut(s)	218, 320
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	400
NciI	CCSGG	2 cut(s)	218, 320
NdeII	GATC	4 cut(s)	63, 285, 381, 511
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	4 cut(s)	57, 222, 303, 452
NmeAIII	GCCGAG	1 cut(s)	168
NruI	TCGCGA	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 123, 132
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	105, 490, 493
Ppu21I	YACGTR	1 cut(s)	310
PspN4I	GGNNCC	4 cut(s)	57, 222, 303, 452
PspPI	GGNCC	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	491
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	344, 431
SatI	GCNGC	3 cut(s)	104, 489, 492
Sau3AI	GATC	4 cut(s)	63, 285, 381, 511
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	218, 320
SduI	GDGCHC	2 cut(s)	218, 327
SfaNI	GCATC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	430, 501
SmoI	CTYRAG	2 cut(s)	430, 501
Sse9I	AATT	2 cut(s)	166, 330
SsiI	CCGC	3 cut(s)	15, 87, 104
StyD4I	CCNGG	2 cut(s)	216, 318
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	4 cut(s)	126, 288, 502, 525
TasI	AATT	2 cut(s)	166, 330
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	344, 431
Tru9I	TTAA	2 cut(s)	344, 431
TseI	GCWGC	2 cut(s)	488, 491
TspDTI	ATGAA	4 cut(s)	17, 511, 538, 566
TspGWI	ACGGA	2 cut(s)	185, 190
Vha464I	CTTAAG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.