AT4G05070

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0019574
Physical Location & Seq
Reverse (-)
2593595 .. 2594125
531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05070.1

Sequence Viewer

Length: 264 bp
ATGAATAGAGTGATTAGTCAGTTTTCCGGTAAGTTGATGAAGGAGAAGAGTGTTACCGGTGTAAGCGGCGGAGATACGACTTTAAGATCTGCCGTCAAAGAATCGGTCTCGTCTCCACAGAGTGCGTCGTCGTCGTCGTCGGTGAGGAGGCTTAAAGGAGATCTGGAATCGAGTCGATTTGGTGCGGCGGCGAGTGAGAGGCTGAGGCAAGCGGAGGAATCTTTGAGGACGGTGATGTTTCTGAGCTGTTGGGGATCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

87

Amino Acids

9.31

Weight (kDa)

9.89

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 25 - 85 5.4e-12 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05070
fragaria_vesca FvH4_3g03810
prunus_persica Prupe.4G035300_v2.0.a1
rosa_multiflora Rmu_co8061632.1_g000001
rosa_roxburghii Rroxscaffold_1G00069890
rosa_rugosa Rorug04G0419500
rosa_samantha Rh5BG046000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 66, 69, 185, 188, 212
AclWI GGATC 1 cut(s) 262
AdeI CACNNNGTG 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 56
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 112, 117
AlwI GGATC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsiGI ACCGGT 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 154, 244
BbvCI CCTCAGC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 112, 117
BglII AGATCT 2 cut(s) 86, 160
BisI GCNGC 3 cut(s) 67, 186, 189
BlsI GCNGC 3 cut(s) 68, 187, 190
Bpu10I CCTNAGC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 112
BsaWI WCCGGW 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 56
BseMII CTCAG 2 cut(s) 194, 233
BseRI GAGGAG 1 cut(s) 160
BshTI ACCGGT 1 cut(s) 56
BsiSI CCGG 2 cut(s) 27, 57
BsmAI GTCTC 2 cut(s) 112, 117
BsmBI CGTCTC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 86, 160, 254
BspACI CCGC 5 cut(s) 66, 69, 185, 188, 212
BspCNI CTCAG 2 cut(s) 195, 234
BspPI GGATC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 3 cut(s) 86, 160, 254
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 203, 242
BstKTI GATC 3 cut(s) 89, 163, 257
BstMAI GTCTC 2 cut(s) 112, 117
BstMBI GATC 3 cut(s) 86, 160, 254
BstX2I RGATCY 3 cut(s) 86, 160, 254
BstYI RGATCY 3 cut(s) 86, 160, 254
Cac8I GCNNGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 56
CseI GACGC 1 cut(s) 114
CspAI ACCGGT 1 cut(s) 56
CviJI RGCY 3 cut(s) 151, 202, 246
CviKI_1 RGCY 3 cut(s) 151, 202, 246
DdeI CTNAG 2 cut(s) 203, 242
DpnI GATC 3 cut(s) 88, 162, 256
DpnII GATC 3 cut(s) 86, 160, 254
DraIII CACNNNGTG 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 67, 186, 189
Fsp4HI GCNGC 3 cut(s) 67, 186, 189
GluI GCNGC 3 cut(s) 67, 186, 189
HapII CCGG 2 cut(s) 27, 57
HgaI GACGC 1 cut(s) 114
HinfI GANTC 4 cut(s) 101, 167, 172, 218
HpaII CCGG 2 cut(s) 27, 57
HphI GGTGA 2 cut(s) 154, 244
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 164
Hpy99I CGWCG 5 cut(s) 130, 133, 136, 139, 142
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 232
HpyF3I CTNAG 2 cut(s) 203, 242
Kzo9I GATC 3 cut(s) 86, 160, 254
LpnPI CCDG 3 cut(s) 40, 70, 149
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 88, 162, 256
MboI GATC 3 cut(s) 86, 160, 254
MboII GAAGA 1 cut(s) 58
MflI RGATCY 3 cut(s) 86, 160, 254
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 6 cut(s) 138, 141, 192, 198, 208, 219
MseI TTAA 2 cut(s) 83, 153
MspI CCGG 2 cut(s) 27, 57
NdeII GATC 3 cut(s) 86, 160, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 3 cut(s) 101, 167, 218
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 3 cut(s) 68, 187, 190
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PsuI RGATCY 3 cut(s) 86, 160, 254
SaqAI TTAA 2 cut(s) 83, 153
SatI GCNGC 3 cut(s) 67, 186, 189
Sau3AI GATC 3 cut(s) 86, 160, 254
SchI GAGTC 1 cut(s) 181
SetI ASST 1 cut(s) 248
SgeI CNNG 7 cut(s) 39, 69, 121, 176, 183, 204, 221
SsiI CCGC 5 cut(s) 66, 69, 185, 188, 212
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 170, 175
TaqII GACCGA 1 cut(s) 94
TauI GCSGC 3 cut(s) 69, 188, 191
TfiI GAWTC 3 cut(s) 101, 167, 218
Tru1I TTAA 2 cut(s) 83, 153
Tru9I TTAA 2 cut(s) 83, 153
TspDTI ATGAA 2 cut(s) 17, 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.