Rroxscaffold_1G00069890

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019574
Physical Location & Seq
Reverse (-)
90732304 .. 90732964
661 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00069890.1

Sequence Viewer

Length: 282 bp
ATGAGCTTGAGGTACGCGAGCAGAGTGTTGTACCAGGCAGGGATGAGGGTGATGAAAGACCAGGCCCCCAAGCTAAGTGGCGAGTCGACCGTTAAGTCTCTCAGGGATTCAGCTTCCTCAGCTTCTTCTTCTTCGACGTCTTCGAAGTTACAGACGAGGCGGTTCTCTGTAACTATTGATTCAAAGGGAAGTGCTTTTAAGGACGCCAAGAGCGAGAAGCTTAAGAATGCAGAGGAGTCTCTGAGGACCGTCATGTACTTGAGCTGCTGGGGTCCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

93

Amino Acids

10.2

Weight (kDa)

10.0

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 17 - 92 2.3e-14 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05070
fragaria_vesca FvH4_3g03810
prunus_persica Prupe.4G035300_v2.0.a1
rosa_multiflora Rmu_co8061632.1_g000001
rosa_roxburghii Rroxscaffold_1G00069890
rosa_rugosa Rorug04G0419500
rosa_samantha Rh5BG046000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AatII GACGTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 160
AcyI GRCGYC 2 cut(s) 137, 204
AfaI GTAC 3 cut(s) 14, 32, 257
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 183
AjnI CCWGG 2 cut(s) 33, 60
AluBI AGCT 6 cut(s) 6, 73, 113, 122, 220, 264
AluI AGCT 6 cut(s) 6, 73, 113, 122, 220, 264
Alw26I GTCTC 2 cut(s) 102, 243
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 64, 246, 272
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 246, 272
BbsI GAAGAC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 251
BciT130I CCWGG 2 cut(s) 35, 62
BcoDI GTCTC 2 cut(s) 102, 243
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 2 cut(s) 35, 62
Bme18I GGWCC 2 cut(s) 246, 272
BmgT120I GGNCC 3 cut(s) 64, 246, 272
BmiI GGNNCC 2 cut(s) 66, 273
BmrFI CCNGG 2 cut(s) 35, 62
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 28, 280
BsaHI GRCGYC 2 cut(s) 137, 204
BseBI CCWGG 2 cut(s) 35, 62
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 115, 132, 233
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 102, 243
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 143
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 114, 131, 234
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 66, 273
BspT104I TTCGAA 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 221
BssNI GRCGYC 2 cut(s) 137, 204
Bst2UI CCWGG 2 cut(s) 35, 62
Bst4CI ACNGT 2 cut(s) 91, 250
BstACI GRCGYC 2 cut(s) 137, 204
BstAFI CTTAAG 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 74, 101, 118, 242
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 17
BstMAI GTCTC 2 cut(s) 102, 243
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 35, 62
BstSCI CCNGG 2 cut(s) 33, 60
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 64, 246, 272
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 13, 31, 256
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 253
CviJI RGCY 7 cut(s) 6, 65, 73, 113, 122, 220, 264
CviKI_1 RGCY 7 cut(s) 6, 65, 73, 113, 122, 220, 264
CviQI GTAC 3 cut(s) 13, 31, 256
DdeI CTNAG 4 cut(s) 74, 101, 118, 242
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 246, 272
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 33, 60
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FatI CATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 265
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 65
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 2 cut(s) 137, 204
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 4 cut(s) 83, 107, 179, 236
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 243, 276
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 91, 250
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 4 cut(s) 74, 101, 118, 242
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 2 cut(s) 137, 204
Hsp92II CATG 1 cut(s) 256
LpnPI CCDG 7 cut(s) 20, 24, 47, 47, 74, 88, 253
Lsp1109I GCAGC 1 cut(s) 251
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 147, 169
MboII GAAGA 4 cut(s) 117, 120, 123, 132
MlyI GAGTC 2 cut(s) 92, 245
MnlI CCTC 6 cut(s) 3, 39, 127, 150, 226, 237
MseI TTAA 3 cut(s) 93, 198, 222
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 35, 62
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 2 cut(s) 35, 62
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 66, 273
NspV TTCGAA 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 140, 210
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 107, 179
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 2 cut(s) 91, 244
PpsI GAGTC 2 cut(s) 91, 244
Psp6I CCWGG 2 cut(s) 33, 60
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 33, 60
PspN4I GGNNCC 2 cut(s) 66, 273
PspPI GGNCC 3 cut(s) 64, 246, 272
RsaI GTAC 3 cut(s) 14, 32, 257
RsaNI GTAC 3 cut(s) 13, 31, 256
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 93, 198, 222
SatI GCNGC 1 cut(s) 265
Sau96I GGNCC 3 cut(s) 64, 246, 272
SchI GAGTC 2 cut(s) 92, 245
ScrFI CCNGG 2 cut(s) 35, 62
SetI ASST 8 cut(s) 8, 14, 75, 115, 124, 140, 222, 266
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 2 cut(s) 246, 272
SmlI CTYRAG 3 cut(s) 7, 221, 259
SmoI CTYRAG 3 cut(s) 7, 221, 259
SsiI CCGC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 33, 60
TaaI ACNGT 2 cut(s) 91, 250
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 86, 134, 143
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 107, 179
Tru1I TTAA 3 cut(s) 93, 198, 222
Tru9I TTAA 3 cut(s) 93, 198, 222
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 246, 272
XmiI GTMKAC 1 cut(s) 86
ZraI GACGTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.