FvH4_3g03810

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019574
Physical Location & Seq
Forward (+)
2136348 .. 2137154
807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03810.t1

Sequence Viewer

Length: 285 bp
ATGAGCTTGAGGTGCGCGAGCAGAGTGTTGTACCAGGCAGGGATGAGGGTGATGAAAGACCAGGCCCCCAAGCTAAGTGGCGAGTCGTCGGCCGTCAAGTCTCTCAGGGATTCTTCTTCTTCTTCTTCTTCGTCTAAGAAGTTACAGACCAGGCGGTTCTCTGTGACCATAATTGATTCAAAGGGAGGTGCTTTTGAGGCTGAGGCTGAGAAGAGCGAGAAGGTTAAGAAAGCAGAGGAGTCTCTGAGGACTGTCATGTACTTGAGCTGTTGGGGTCCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

95

Amino Acids

10.3

Weight (kDa)

9.74

Isoelectric Point (pI)

65.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 17 - 93 1.3e-13 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05070
fragaria_vesca FvH4_3g03810
prunus_persica Prupe.4G035300_v2.0.a1
rosa_multiflora Rmu_co8061632.1_g000001
rosa_roxburghii Rroxscaffold_1G00069890
rosa_rugosa Rorug04G0419500
rosa_samantha Rh5BG046000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 2 cut(s) 32, 260
AgsI TTSAA 1 cut(s) 180
AjnI CCWGG 3 cut(s) 33, 60, 149
AluBI AGCT 3 cut(s) 6, 73, 267
AluI AGCT 3 cut(s) 6, 73, 267
Alw26I GTCTC 2 cut(s) 105, 246
AoxI GGCC 2 cut(s) 63, 90
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 64, 275
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 35, 62, 151
BcoDI GTCTC 2 cut(s) 105, 246
Bme1390I CCNGG 3 cut(s) 35, 62, 151
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 64, 275
BmiI GGNNCC 2 cut(s) 66, 276
BmrFI CCNGG 3 cut(s) 35, 62, 151
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 28, 283
BseBI CCWGG 3 cut(s) 35, 62, 151
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 4 cut(s) 118, 192, 198, 236
BseRI GAGGAG 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 65, 92
BsiEI CGRYCG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 105, 246
BsnI GGCC 2 cut(s) 65, 92
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 65, 92
BspCNI CTCAG 4 cut(s) 117, 193, 199, 237
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 66, 276
BspQI GCTCTTC 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 35, 62, 151
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 6 cut(s) 74, 104, 135, 201, 207, 245
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 17
BstMAI GTCTC 2 cut(s) 105, 246
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 12, 197
BstNI CCWGG 3 cut(s) 35, 62, 151
BstSCI CCNGG 3 cut(s) 33, 60, 149
BstUI CGCG 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 65, 92
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 64, 275
Csp6I GTAC 2 cut(s) 31, 259
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 6, 65, 73, 92, 200, 206, 267
CviKI_1 RGCY 7 cut(s) 6, 65, 73, 92, 200, 206, 267
CviQI GTAC 2 cut(s) 31, 259
DdeI CTNAG 6 cut(s) 74, 104, 135, 201, 207, 245
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 33, 60, 149
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 170, 257
FatI CATG 1 cut(s) 255
FokI GGATG 1 cut(s) 55
GlaI GCGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 65, 92
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 4 cut(s) 83, 110, 176, 239
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 246, 279
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 197
HpyF3I CTNAG 6 cut(s) 74, 104, 135, 201, 207, 245
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 206
LpnPI CCDG 8 cut(s) 20, 24, 47, 47, 74, 91, 136, 163
MaeIII GTNAC 2 cut(s) 141, 163
MboII GAAGA 7 cut(s) 105, 108, 111, 114, 117, 120, 223
MluCI AATT 1 cut(s) 171
MlyI GAGTC 2 cut(s) 92, 248
MnlI CCTC 7 cut(s) 3, 39, 179, 190, 196, 229, 240
MseI TTAA 1 cut(s) 225
MspR9I CCNGG 3 cut(s) 35, 62, 151
MvaI CCWGG 3 cut(s) 35, 62, 151
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 12, 197
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 66, 276
NmuCI GTSAC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 110, 176
PleI GAGTC 2 cut(s) 91, 247
PpsI GAGTC 2 cut(s) 91, 247
Psp6I CCWGG 3 cut(s) 33, 60, 149
PspGI CCWGG 3 cut(s) 33, 60, 149
PspN4I GGNNCC 2 cut(s) 66, 276
PspPI GGNCC 2 cut(s) 64, 275
RsaI GTAC 2 cut(s) 32, 260
RsaNI GTAC 2 cut(s) 31, 259
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 225
Sau96I GGNCC 2 cut(s) 64, 275
SchI GAGTC 2 cut(s) 92, 248
ScrFI CCNGG 3 cut(s) 35, 62, 151
SetI ASST 6 cut(s) 8, 14, 75, 190, 225, 269
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 7, 262
SmoI CTYRAG 2 cut(s) 7, 262
Sse9I AATT 1 cut(s) 171
SsiI CCGC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 33, 60, 149
TaaI ACNGT 1 cut(s) 253
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 110, 176
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.