Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017130

Physical Location & Seq

Genomic Coordinates Forward (+)

5923484 .. 5924366

Gene Structure 883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGCAAACTTTTATTATGATCAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTGCAGGTTTGAGAAGAAGGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGAGATCTTTTGCTGAGAAGCACTACGAAGACTTATCTTCAAAGTCTTTCTTCAGTGGACTCGTTGACTACATTGTATCCGGCCCTGTTGTTGCTATGATCTGGGAAGGAAAGAATGTTGTCTTGACCGGAAGAAAGATCATTGGAGCTACCAACCCAGCAGCTTCTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTGACATTGGCAGGAACGTGATCCATGGTAGTGACTCTGTCGAGAGTGCAAGAAAGGAGATTGCTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGCGTTCACCCTTGGGTCTATGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009636 GO:0009987 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050896 GO:0051716 GO:0055086 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

149

Amino Acids

16.5

Weight (kDa)

6.3

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	2 - 133	9.9e-56	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09320
fragaria_vesca	FvH4_7g10410
malus_domestica	MD07G1110200.v1.1
prunus_persica	Prupe.2G133700_v2.0.a1
pyrus_communis	pycom07g09510
rosa_chinensis	RchiOBHm_Chr1g0348101
rosa_laevigata	RLG00000028689
rosa_multiflora	Rmu_sc0036966.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307230
rosa_rugosa	Rorug01G0192500
rosa_samantha	Rh1BG175800 Rh1DG205600
rosa_wichuraiana	Rw1G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	125, 157
AcyI	GRCGYC	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	97, 162
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	269, 284
AluI	AGCT	2 cut(s)	269, 284
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	281, 420
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	203, 401
AsuHPI	GGTGA	2 cut(s)	68, 419
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	293, 432
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	2 cut(s)	21, 111
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	2 cut(s)	282, 421
BlsI	GCNGC	2 cut(s)	283, 422
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	203, 401
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	304, 343, 431
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	304, 343, 431
BseMII	CTCAG	2 cut(s)	126, 279
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	293, 432
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	201, 249
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	127, 280
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	3 cut(s)	304, 343, 431
BssMI	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	343, 431
Bst2UI	CCWGG	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	135, 288
BstDSI	CCRYGG	2 cut(s)	304, 343
BstKTI	GATC	6 cut(s)	24, 114, 128, 222, 261, 342
BstMBI	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	293, 432
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	2 cut(s)	304, 343
BtsIMutI	CAGTG	2 cut(s)	121, 181
BveI	ACCTGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	203, 401
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	5 cut(s)	28, 204, 269, 284, 292
CviKI_1	RGCY	5 cut(s)	28, 204, 269, 284, 292
DdeI	CTNAG	2 cut(s)	135, 288
DpnI	GATC	6 cut(s)	23, 113, 127, 221, 260, 341
DpnII	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
Eco130I	CCWWGG	2 cut(s)	343, 431
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	125, 157
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	343, 431
ErhI	CCWWGG	2 cut(s)	343, 431
FaeI	CATG	1 cut(s)	347
FaiI	YATR	4 cut(s)	20, 218, 345, 441
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	2 cut(s)	21, 111
Fnu4HI	GCNGC	2 cut(s)	282, 421
Fsp4HI	GCNGC	2 cut(s)	282, 421
GluI	GCNGC	2 cut(s)	282, 421
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	201, 249
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	187, 409
HindII	GTYRAC	2 cut(s)	187, 409
HinfI	GANTC	3 cut(s)	48, 180, 353
HpaII	CCGG	2 cut(s)	201, 249
HphI	GGTGA	2 cut(s)	68, 419
Hpy166II	GTNNAC	4 cut(s)	179, 187, 409, 427
Hpy188I	TCNGA	2 cut(s)	105, 289
Hpy188III	TCNNGA	3 cut(s)	40, 244, 361
Hpy8I	GTNNAC	4 cut(s)	179, 187, 409, 427
HpyAV	CCTTC	2 cut(s)	76, 221
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	69, 368
HpyF3I	CTNAG	2 cut(s)	135, 288
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	347
Ksp22I	TGATCA	2 cut(s)	21, 111
Kzo9I	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
LmnI	GCTCC	2 cut(s)	4, 266
Lsp1109I	GCAGC	2 cut(s)	293, 432
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	6 cut(s)	23, 113, 127, 221, 260, 341
MboI	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
MboII	GAAGA	5 cut(s)	91, 150, 161, 163, 264
MflI	RGATCY	1 cut(s)	125
MlyI	GAGTC	3 cut(s)	42, 174, 347
MnlI	CCTC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	2 cut(s)	201, 249
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	86
PflFI	GACNNNGTC	2 cut(s)	35, 356
PkrI	GCNGC	2 cut(s)	283, 422
PleI	GAGTC	3 cut(s)	42, 174, 347
PpsI	GAGTC	3 cut(s)	42, 174, 347
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	2 cut(s)	203, 401
PstI	CTGCAG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	2 cut(s)	35, 356
RseI	CAYNNNNRTG	1 cut(s)	348
SatI	GCNGC	2 cut(s)	282, 421
Sau3AI	GATC	6 cut(s)	21, 111, 125, 219, 258, 339
Sau96I	GGNCC	2 cut(s)	203, 401
SchI	GAGTC	3 cut(s)	42, 174, 347
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	6 cut(s)	74, 103, 271, 286, 339, 406
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	343, 431
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	121, 181
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	281, 420
Tsp45I	GTSAC	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	121, 181
Tth111I	GACNNNGTC	2 cut(s)	35, 356
VpaK11BI	GGWCC	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.