Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0017130

Physical Location & Seq

Genomic Coordinates Reverse (-)

12659592 .. 12661512

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1110200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGCAAACTTTCATCATGATCAAGCCTGATGGTGTCCAAAGGGGCCTGGTTGGTGACATCATTAGCAGGTTTGAGAAGAAGGGCTTCTATTTGAAAGGTATGAAGTTCATCAATGTGGATCGTCCTTTTGCTGAGAAGCACTACGAGGACTTGTCTGCAAAGCCCTTCTTCAGTGGATTGGTTGATTACATTATCTCTGGTCCCGTTGTTGCTATGATCTGGGAGGGTAAGAATGTTATTCTTACCGGCCGAAAGATCATTGGTGCCACCAACCCAGCAGAATCTGCCCCCGGAACCATCCGTGGTGATTATGCAATTGAGATTGGCAGGAACATCATTCATGGAAGTGACTCAGCCGAGGGTGCAAGGAAGGAGATTGCACTGTGGTTCCCCGACGGCCCTGCAAACTGGCAGAGCAGCGTTCACCACTGGATCTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009636 GO:0009987 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050896 GO:0051716 GO:0055086 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

149

Amino Acids

16.54

Weight (kDa)

6.43

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	2 - 133	3.3e-56	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09320
fragaria_vesca	FvH4_7g10410
malus_domestica	MD07G1110200.v1.1
prunus_persica	Prupe.2G133700_v2.0.a1
pyrus_communis	pycom07g09510
rosa_chinensis	RchiOBHm_Chr1g0348101
rosa_laevigata	RLG00000028689
rosa_multiflora	Rmu_sc0036966.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307230
rosa_rugosa	Rorug01G0192500
rosa_samantha	Rh1BG175800 Rh1DG205600
rosa_wichuraiana	Rw1G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	129, 443
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	48
AlwI	GGATC	2 cut(s)	129, 443
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	46, 250, 400
ApeKI	GCWGC	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	46, 203, 401
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	68, 320, 419
AvaII	GGWCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	26, 308
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	50, 294
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	46, 203, 401
BmiI	GGNNCC	5 cut(s)	47, 205, 268, 298, 392
BmrFI	CCNGG	2 cut(s)	50, 294
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	292, 304, 360
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	416, 437
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	292, 304, 360
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	126, 369
BseNI	ACTGG	2 cut(s)	416, 437
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	48, 252, 402
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	249, 294
BslFI	GGGAC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	48, 252, 402
Bsp143I	GATC	5 cut(s)	21, 121, 219, 258, 435
BspANI	GGCC	3 cut(s)	48, 252, 402
BspCNI	CTCAG	2 cut(s)	127, 368
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	5 cut(s)	47, 205, 268, 298, 392
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	129, 443
BspT107I	GGYRCC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	416, 437
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	292, 304, 360
BssMI	GATC	5 cut(s)	21, 121, 219, 258, 435
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	135, 355
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	5 cut(s)	24, 124, 222, 261, 438
BstMBI	GATC	5 cut(s)	21, 121, 219, 258, 435
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 365
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	48, 292
BstV1I	GCAGC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BstZI	CGGCCG	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	48, 252, 402
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	181, 383, 430
BveI	ACCTGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	46, 203, 401
CviAII	CATG	2 cut(s)	19, 344
CviJI	RGCY	7 cut(s)	28, 48, 87, 166, 252, 359, 402
CviKI_1	RGCY	7 cut(s)	28, 48, 87, 166, 252, 359, 402
DdeI	CTNAG	2 cut(s)	135, 355
DpnI	GATC	5 cut(s)	23, 123, 221, 260, 437
DpnII	GATC	5 cut(s)	21, 121, 219, 258, 435
EaeI	YGGCCR	1 cut(s)	250
EagI	CGGCCG	1 cut(s)	250
EclXI	CGGCCG	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	22, 347
FaiI	YATR	6 cut(s)	20, 104, 218, 315, 345, 441
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 155, 187
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	18, 343
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	421
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	48, 252, 402
HapII	CCGG	2 cut(s)	249, 294
Hin1II	CATG	2 cut(s)	22, 347
HinfI	GANTC	2 cut(s)	284, 353
HpaII	CCGG	2 cut(s)	249, 294
HphI	GGTGA	3 cut(s)	68, 320, 419
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	3 cut(s)	76, 178, 367
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	161, 317, 368, 383, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 365
HpyF3I	CTNAG	2 cut(s)	135, 355
Hsp92II	CATG	2 cut(s)	22, 347
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	5 cut(s)	21, 121, 219, 258, 435
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	56, 350
MalI	GATC	5 cut(s)	23, 123, 221, 260, 437
MboI	GATC	5 cut(s)	21, 121, 219, 258, 435
MboII	GAAGA	2 cut(s)	91, 163
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	435
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	142, 220, 355
MroXI	GAANNNNTTC	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	116, 348
MspI	CCGG	2 cut(s)	249, 294
MspR9I	CCNGG	2 cut(s)	50, 294
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	287, 365
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	5 cut(s)	21, 121, 219, 258, 435
NlaIII	CATG	2 cut(s)	22, 347
NlaIV	GGNNCC	5 cut(s)	47, 205, 268, 298, 392
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	56, 350
PagI	TCATGA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	47, 205, 268, 298, 392
PspPI	GGNCC	3 cut(s)	46, 203, 401
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	2 cut(s)	116, 348
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	5 cut(s)	21, 121, 219, 258, 435
Sau96I	GGNCC	3 cut(s)	46, 203, 401
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	50, 294
SetI	ASST	2 cut(s)	74, 103
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	116, 348
Sse9I	AATT	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	48, 292
TaaI	ACNGT	1 cut(s)	387
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	3 cut(s)	181, 390, 437
TseFI	GTSAC	2 cut(s)	56, 350
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	2 cut(s)	56, 350
TspDTI	ATGAA	4 cut(s)	4, 100, 119, 332
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	181, 390, 437
VpaK11BI	GGWCC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.