Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017130

Physical Location & Seq

Genomic Coordinates Reverse (-)

9855167 .. 9857034

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGCAAACTTTCATCATGATCAAGCCTGATGGCGTTCAGAGGGGCCTGGTTGGTGAGATTATCAGCAGGTTTGAGAAGAAGGGTTTCTCTTTGAAAGGCCTGAAGTTTATCACTGTGGATCGTCCTTTCGCTGAGAAGCACTATGCAGATTTATCTGCTAAGCCCTTTTTCAGTGGATTGGTTGATTATATTGTTTCTGGCCCTGTTGTTGCTATGATCTGGGAGGGTAAGAATGTTGTGTTAACTGGCCGAAAGATTATTGGAGCCACAAACCCTGCAGACTCTGCCCCTGGAACCATCCGTGGTGATTTTGCCGTTGAGATTGGCAGGAACATCATTCATGGAAGTGATGCAGTTGAGAGTGCAAGGAAAGAGATTGCACTTTGGTTCCCTGAAGGCCCTGTTCACTGGCAGAGCAGCCTTAGCCCCTGGATCTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009636 GO:0009987 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050896 GO:0051716 GO:0055086 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

149

Amino Acids

16.35

Weight (kDa)

6.84

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	2 - 133	1.2e-56	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09320
fragaria_vesca	FvH4_7g10410
malus_domestica	MD07G1110200.v1.1
prunus_persica	Prupe.2G133700_v2.0.a1
pyrus_communis	pycom07g09510
rosa_chinensis	RchiOBHm_Chr1g0348101
rosa_laevigata	RLG00000028689
rosa_multiflora	Rmu_sc0036966.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307230
rosa_rugosa	Rorug01G0192500
rosa_samantha	Rh1BG175800 Rh1DG205600
rosa_wichuraiana	Rw1G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	129, 443
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	2 cut(s)	125, 417
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	48, 292, 431
AlwI	GGATC	2 cut(s)	129, 443
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	5 cut(s)	46, 100, 202, 250, 400
ApeKI	GCWGC	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	46, 203, 401
AsuHPI	GGTGA	2 cut(s)	68, 320
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	26, 308
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	3 cut(s)	50, 294, 433
BclI	TGATCA	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	421
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	3 cut(s)	50, 294, 433
BmgT120I	GGNCC	3 cut(s)	46, 203, 401
BmiI	GGNNCC	4 cut(s)	47, 268, 298, 392
BmrFI	CCNGG	3 cut(s)	50, 294, 433
BmsI	GCATC	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	292, 304, 431
Bse1I	ACTGG	2 cut(s)	253, 416
BseBI	CCWGG	3 cut(s)	50, 294, 433
BseDI	CCNNGG	3 cut(s)	292, 304, 431
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	253, 416
BseXI	GCAGC	1 cut(s)	432
BshFI	GGCC	5 cut(s)	48, 102, 204, 252, 402
BsnI	GGCC	5 cut(s)	48, 102, 204, 252, 402
Bsp143I	GATC	4 cut(s)	21, 121, 219, 435
Bsp1720I	GCTNAGC	1 cut(s)	162
BspANI	GGCC	5 cut(s)	48, 102, 204, 252, 402
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	47, 268, 298, 392
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	129, 443
BsrI	ACTGG	2 cut(s)	253, 416
BssECI	CCNNGG	3 cut(s)	292, 304, 431
BssMI	GATC	4 cut(s)	21, 121, 219, 435
Bst2UI	CCWGG	3 cut(s)	50, 294, 433
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	135, 162, 425
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	4 cut(s)	24, 124, 222, 438
BstMBI	GATC	4 cut(s)	21, 121, 219, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 426
BstNI	CCWGG	3 cut(s)	50, 294, 433
BstSCI	CCNGG	3 cut(s)	48, 292, 431
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	48, 102, 204, 252, 402
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	114, 181, 409
BveI	ACCTGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	46, 203, 401
CviAII	CATG	2 cut(s)	19, 344
DdeI	CTNAG	3 cut(s)	135, 162, 425
DpnI	GATC	4 cut(s)	23, 123, 221, 437
DpnII	GATC	4 cut(s)	21, 121, 219, 435
EaeI	YGGCCR	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	125, 417
EcoO109I	RGGNCCY	2 cut(s)	46, 401
EcoRII	CCWGG	3 cut(s)	48, 292, 431
FaeI	CATG	2 cut(s)	22, 347
FaiI	YATR	6 cut(s)	20, 147, 192, 218, 345, 441
FatI	CATG	2 cut(s)	18, 343
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	421
HaeIII	GGCC	5 cut(s)	48, 102, 204, 252, 402
Hin1II	CATG	2 cut(s)	22, 347
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	284
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	2 cut(s)	68, 320
Hpy166II	GTNNAC	2 cut(s)	246, 409
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	246, 409
HpyAV	CCTTC	2 cut(s)	76, 392
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	149, 281, 356, 368, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 426
HpyF3I	CTNAG	3 cut(s)	135, 162, 425
Hsp92II	CATG	2 cut(s)	22, 347
Ksp22I	TGATCA	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	21, 121, 219, 435
LmnI	GCTCC	2 cut(s)	4, 266
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	343
MalI	GATC	4 cut(s)	23, 123, 221, 437
MboI	GATC	4 cut(s)	21, 121, 219, 435
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	36, 220
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	50, 294, 433
MvaI	CCWGG	3 cut(s)	50, 294, 433
MwoI	GCNNNNNNNGC	2 cut(s)	287, 426
NdeII	GATC	4 cut(s)	21, 121, 219, 435
NlaIII	CATG	2 cut(s)	22, 347
NlaIV	GGNNCC	4 cut(s)	47, 268, 298, 392
PagI	TCATGA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	48, 292, 431
PspGI	CCWGG	3 cut(s)	48, 292, 431
PspN4I	GGNNCC	4 cut(s)	47, 268, 298, 392
PspPI	GGNCC	3 cut(s)	46, 203, 401
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	4 cut(s)	21, 121, 219, 435
Sau96I	GGNCC	3 cut(s)	46, 203, 401
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	50, 294, 433
SetI	ASST	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	48, 292, 431
TaaI	ACNGT	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	3 cut(s)	121, 181, 416
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	4, 332
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	121, 181, 416
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.