AT4G13250

chlorophyll(ide) b reductase NYC1, chloroplastic

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
7684156 .. 7687006
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13250.1

Sequence Viewer

Length: 1491 bp
ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTCAGAGATCCGATACGGGTCGGGTCAAGATTGACTTGTAGAGAACGTAGTAATAGGGTTTATGTGCATCGGTGTGAGAAAAAAGTTGAAAGAAAGAGAAAAGTTGAGAAATTTAAGGGAAATGGGTCGTGGGATTCTTTGAAATCTGGGTTTTTAGGGTTTAGTAAATTAGGGTTCTTGTCTAAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGATGGTTTTCTCTTCGGTTGCTGTTCAAATTGCGAGATACATTGTGACGATGACAAGTACTGGAGCTATTCTTTTGATTGGGTTTCAATTATCAGGTGGAGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGAATTATCATTGGAACCATGACTGGTGCTAACATGGTTTTGGAAGATCATTATCGAGCCGGTCCACGGAATGTTGTTATAACCGGAAGCACTAGGGGACTAGGGAAAGCTCTTGCTAGAGAGTTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATGACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAACGCTAGCGAGTCAGCTAGAAAGAAACTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGAAGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGATAAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACGGAAGAAGATATCACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGTACACGAGGGGCTATGGATGTGATGAGCAGACAGCACAGTGGTGGACACATCTTTAACATGGATGGTGCTGGCTCTGGAGGTTCAAGTACTCCTCTCACTGCCGTATATGGTTCAACAAAATGTGGACTTAGGCAGTTTCATGGGTCTATAGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTTCACACTGCATCCCCTGGCATGGTTCTGACAGAACTTCTTCTCAGTGGTTCGAGCATTAAAAACAAGCAGATGTTTAACATAATCTGTGAGCTTCCTGAGACAGTAGCTAGAACTTTGGTACCACGAATGCGAGTTGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTAACTCCTCCTCGGATATTGTTAGCTATTGTCACTTCCTGGCTAAGGAGAGGCCGATGGTTTGATGACCAAGGACGGGCGTTATATGCAGCAGAAGCAGATAGACTAAGGAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACAGACGCGATGGAGATGTATACAGAGAATACTTGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTGCGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAA

Protein Analysis

496

Amino Acids

54.84

Weight (kDa)

9.48

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 163 - 367 4.1e-34 short chain dehydrogenase
KR PF08659 164 - 288 1.8e-06 KR domain
adh_short_C2 PF13561 170 - 369 2.1e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AasI GACNNNNNNGTC 1 cut(s) 1366
Acc65I GGTACC 1 cut(s) 1183
AccB1I GGYRCC 1 cut(s) 1183
AccI GTMKAC 1 cut(s) 1394
AccII CGCG 1 cut(s) 1382
AciI CCGC 1 cut(s) 812
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 2 cut(s) 59, 877
AcsI RAATTY 3 cut(s) 167, 739, 859
AcuI CTGAAG 1 cut(s) 43
AfaI GTAC 6 cut(s) 29, 334, 793, 883, 970, 1185
AfiI CCNNNNNNNGG 4 cut(s) 483, 1084, 1275, 1306
AgsI TTSAA 8 cut(s) 23, 146, 199, 266, 302, 362, 966, 996
AjnI CCWGG 3 cut(s) 1078, 1268, 1480
AleI CACNNNNGTG 1 cut(s) 921
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 5 cut(s) 56, 549, 856, 1157, 1417
AlwI GGATC 2 cut(s) 59, 877
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 2 cut(s) 1060, 1282
ApeKI GCWGC 1 cut(s) 1319
ApoI RAATTY 3 cut(s) 167, 739, 859
Asp700I GAANNNNTTC 1 cut(s) 1101
Asp718I GGTACC 1 cut(s) 1183
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 1167, 1200
BanI GGYRCC 1 cut(s) 1183
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 1331
BccI CCATC 5 cut(s) 271, 773, 938, 1281, 1378
BceAI ACGGC 2 cut(s) 968, 1205
BciT130I CCWGG 3 cut(s) 1080, 1270, 1482
BcoDI GTCTC 5 cut(s) 56, 549, 856, 1157, 1417
BfaI CTAG 8 cut(s) 510, 518, 534, 614, 648, 660, 1173, 1470
BfmI CTRYAG 1 cut(s) 1029
BisI GCNGC 1 cut(s) 1320
BlsI GCNGC 1 cut(s) 1321
BmcAI AGTACT 2 cut(s) 334, 970
Bme1390I CCNGG 3 cut(s) 1080, 1270, 1482
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 433, 763, 1185
BmrFI CCNGG 3 cut(s) 1080, 1270, 1482
BmrI ACTGGG 1 cut(s) 1354
BmsI GCATC 3 cut(s) 133, 667, 1082
BmtI GCTAGC 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 1354
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 3 cut(s) 357, 573, 978
Bpu10I CCTNAGC 2 cut(s) 681, 1274
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 1417
BsaJI CCNNGG 4 cut(s) 482, 1078, 1241, 1300
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 483, 1084, 1275, 1306
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 3 cut(s) 340, 445, 1349
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 3 cut(s) 1080, 1270, 1482
BseDI CCNNGG 4 cut(s) 482, 1078, 1241, 1300
BseGI GGATG 3 cut(s) 904, 949, 1073
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 4 cut(s) 483, 1084, 1275, 1306
BseMII CTCAG 3 cut(s) 662, 1120, 1152
BseNI ACTGG 3 cut(s) 340, 445, 1349
BseRI GAGGAG 3 cut(s) 963, 1227, 1230
BseXI GCAGC 1 cut(s) 1331
Bsh1236I CGCG 1 cut(s) 1382
BshFI GGCC 2 cut(s) 1062, 1284
BshNI GGYRCC 1 cut(s) 1183
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 2 cut(s) 477, 501
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 4 cut(s) 483, 1084, 1275, 1306
BsmAI GTCTC 5 cut(s) 56, 549, 856, 1157, 1417
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 2 cut(s) 1062, 1284
Bso31I GGTCTC 1 cut(s) 1417
BsoBI CYCGRG 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 881
Bsp143I GATC 3 cut(s) 64, 463, 869
BspACI CCGC 1 cut(s) 812
BspANI GGCC 2 cut(s) 1062, 1284
BspCNI CTCAG 3 cut(s) 663, 1119, 1153
BspFNI CGCG 1 cut(s) 1382
BspLI GGNNCC 3 cut(s) 433, 763, 1185
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 59, 877
BspT107I GGYRCC 1 cut(s) 1183
BspTNI GGTCTC 1 cut(s) 1417
BsrFI RCCGGY 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 881
BsrI ACTGG 3 cut(s) 340, 445, 1349
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 4 cut(s) 482, 1078, 1241, 1300
BssMI GATC 3 cut(s) 64, 463, 869
BssNAI GTATAC 1 cut(s) 1395
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 1300
Bst1107I GTATAC 1 cut(s) 1395
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 3 cut(s) 1080, 1270, 1482
Bst4CI ACNGT 4 cut(s) 50, 604, 920, 1168
Bst6I CTCTTC 2 cut(s) 59, 292
BstAUI TGTACA 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 649, 952
BstDEI CTNAG 7 cut(s) 671, 681, 1010, 1106, 1161, 1274, 1337
BstDSI CCRYGG 1 cut(s) 482
BstENI CCTNNNNNAGG 1 cut(s) 1273
BstF5I GGATG 3 cut(s) 904, 949, 1073
BstFNI CGCG 1 cut(s) 1382
BstHHI GCGC 1 cut(s) 1442
BstKTI GATC 3 cut(s) 67, 466, 872
BstMAI GTCTC 5 cut(s) 56, 549, 856, 1157, 1417
BstMBI GATC 3 cut(s) 64, 463, 869
BstMWI GCNNNNNNNGC 2 cut(s) 1316, 1325
BstNI CCWGG 3 cut(s) 1080, 1270, 1482
BstSCI CCNGG 3 cut(s) 1078, 1268, 1480
BstSFI CTRYAG 1 cut(s) 1029
BstUI CGCG 1 cut(s) 1382
BstV1I GCAGC 1 cut(s) 1331
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 1395
BsuRI GGCC 2 cut(s) 1062, 1284
BtgI CCRYGG 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 1397
BtsCI GGATG 3 cut(s) 904, 949, 1073
BtsI GCAGTG 2 cut(s) 978, 1068
BtsIMutI CAGTG 4 cut(s) 925, 978, 1068, 1114
Cac8I GCNNGC 2 cut(s) 649, 952
CfoI GCGC 1 cut(s) 1442
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 1388
Csp6I GTAC 6 cut(s) 28, 333, 792, 882, 969, 1184
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 5 cut(s) 436, 451, 940, 1022, 1084
CviQI GTAC 6 cut(s) 28, 333, 792, 882, 969, 1184
DdeI CTNAG 7 cut(s) 671, 681, 1010, 1106, 1161, 1274, 1337
DpnI GATC 3 cut(s) 66, 465, 871
DpnII GATC 3 cut(s) 64, 463, 869
DrdI GACNNNNNNGTC 1 cut(s) 1366
DseDI GACNNNNNNGTC 1 cut(s) 1366
Eam1104I CTCTTC 2 cut(s) 59, 292
EarI CTCTTC 2 cut(s) 59, 292
Eco130I CCWWGG 1 cut(s) 1300
Eco31I GGTCTC 1 cut(s) 1417
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 818
EcoNI CCTNNNNNAGG 1 cut(s) 1273
EcoRII CCWGG 3 cut(s) 1078, 1268, 1480
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 1300
ErhI CCWWGG 1 cut(s) 1300
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 5 cut(s) 439, 454, 943, 1025, 1087
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 528
FatI CATG 5 cut(s) 435, 450, 939, 1021, 1083
FauNDI CATATG 1 cut(s) 773
FblI GTMKAC 1 cut(s) 1394
Fnu4HI GCNGC 1 cut(s) 1320
FokI GGATG 3 cut(s) 911, 956, 1060
Fsp4HI GCNGC 1 cut(s) 1320
FspBI CTAG 8 cut(s) 510, 518, 534, 614, 648, 660, 1173, 1470
GlaI GCGC 1 cut(s) 1441
GluI GCNGC 1 cut(s) 1320
GsuI CTGGAG 3 cut(s) 357, 573, 978
HaeIII GGCC 2 cut(s) 1062, 1284
HapII CCGG 2 cut(s) 477, 501
HgaI GACGC 1 cut(s) 1388
HhaI GCGC 1 cut(s) 1442
Hin1II CATG 5 cut(s) 439, 454, 943, 1025, 1087
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HinfI GANTC 5 cut(s) 19, 191, 561, 587, 653
HpaI GTTAAC 1 cut(s) 1374
HpaII CCGG 2 cut(s) 477, 501
Hpy166II GTNNAC 8 cut(s) 28, 482, 825, 884, 926, 1007, 1374, 1395
Hpy188I TCNGA 6 cut(s) 62, 69, 258, 586, 1092, 1245
Hpy188III TCNNGA 5 cut(s) 84, 552, 957, 1160, 1212
Hpy8I GTNNAC 8 cut(s) 28, 482, 825, 884, 926, 1007, 1374, 1395
HpyAV CCTTC 1 cut(s) 1073
HpyCH4III ACNGT 4 cut(s) 50, 604, 920, 1168
HpyCH4IV ACGT 3 cut(s) 103, 723, 1056
HpyCH4V TGCA 4 cut(s) 124, 711, 1073, 1319
HpyF10VI GCNNNNNNNGC 2 cut(s) 1316, 1325
HpyF3I CTNAG 7 cut(s) 671, 681, 1010, 1106, 1161, 1274, 1337
HpySE526I ACGT 3 cut(s) 103, 723, 1056
Hsp92II CATG 5 cut(s) 439, 454, 943, 1025, 1087
HspAI GCGC 1 cut(s) 1440
KpnI GGTACC 1 cut(s) 1187
KspAI GTTAAC 1 cut(s) 1374
Kzo9I GATC 3 cut(s) 64, 463, 869
LmnI GCTCC 2 cut(s) 43, 338
Lsp1109I GCAGC 1 cut(s) 1331
LweI GCATC 3 cut(s) 133, 667, 1082
MaeI CTAG 8 cut(s) 510, 518, 534, 614, 648, 660, 1173, 1470
MaeII ACGT 3 cut(s) 103, 723, 1056
MaeIII GTNAC 4 cut(s) 319, 568, 641, 1261
MalI GATC 3 cut(s) 66, 465, 871
MboI GATC 3 cut(s) 64, 463, 869
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 9 cut(s) 167, 224, 303, 362, 420, 739, 859, 873, 1225
MlyI GAGTC 2 cut(s) 570, 662
MnlI CCTC 7 cut(s) 881, 953, 984, 1248, 1251, 1274, 1356
MroXI GAANNNNTTC 1 cut(s) 1101
MseI TTAA 6 cut(s) 11, 171, 936, 1122, 1140, 1373
MslI CAYNNNNRTG 2 cut(s) 129, 921
MspI CCGG 2 cut(s) 477, 501
MspR9I CCNGG 3 cut(s) 1080, 1270, 1482
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 3 cut(s) 1080, 1270, 1482
MvnI CGCG 1 cut(s) 1382
MwoI GCNNNNNNNGC 2 cut(s) 1316, 1325
NdeI CATATG 1 cut(s) 773
NdeII GATC 3 cut(s) 64, 463, 869
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 5 cut(s) 439, 454, 943, 1025, 1087
NlaIV GGNNCC 3 cut(s) 433, 763, 1185
NmuCI GTSAC 3 cut(s) 319, 568, 1261
OliI CACNNNNGTG 1 cut(s) 921
PaeR7I CTCGAG 1 cut(s) 818
PcsI WCGNNNNNNNCGW 1 cut(s) 1367
PctI GAATGC 1 cut(s) 1197
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 3 cut(s) 19, 191, 587
PflFI GACNNNGTC 1 cut(s) 560
PkrI GCNGC 1 cut(s) 1321
PleI GAGTC 2 cut(s) 569, 661
PpsI GAGTC 2 cut(s) 569, 661
PsiI TTATAA 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 1056
Psp6I CCWGG 3 cut(s) 1078, 1268, 1480
PspGI CCWGG 3 cut(s) 1078, 1268, 1480
PspN4I GGNNCC 3 cut(s) 433, 763, 1185
PspPI GGNCC 1 cut(s) 479
PspXI VCTCGAGB 1 cut(s) 818
PsuI RGATCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 6 cut(s) 29, 334, 793, 883, 970, 1185
RsaNI GTAC 6 cut(s) 28, 333, 792, 882, 969, 1184
RseI CAYNNNNRTG 2 cut(s) 129, 921
SaqAI TTAA 6 cut(s) 11, 171, 936, 1122, 1140, 1373
SatI GCNGC 1 cut(s) 1320
Sau3AI GATC 3 cut(s) 64, 463, 869
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 2 cut(s) 334, 970
SchI GAGTC 2 cut(s) 570, 662
ScrFI CCNGG 3 cut(s) 1080, 1270, 1482
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 3 cut(s) 133, 667, 1082
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 818
SinI GGWCC 1 cut(s) 479
SlaI CTCGAG 1 cut(s) 818
SmiMI CAYNNNNRTG 2 cut(s) 129, 921
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 9 cut(s) 167, 224, 303, 362, 420, 739, 859, 873, 1225
SsiI CCGC 1 cut(s) 812
SspMI CTAG 8 cut(s) 510, 518, 534, 614, 648, 660, 1173, 1470
StyD4I CCNGG 3 cut(s) 1078, 1268, 1480
StyI CCWWGG 1 cut(s) 1300
TaaI ACNGT 4 cut(s) 50, 604, 920, 1168
TaiI ACGT 3 cut(s) 106, 726, 1059
TaqI TCGA 5 cut(s) 383, 472, 737, 819, 1115
TasI AATT 9 cut(s) 167, 224, 303, 362, 420, 739, 859, 873, 1225
TatI WGTACW 3 cut(s) 332, 881, 968
TfiI GAWTC 3 cut(s) 19, 191, 587
Tru1I TTAA 6 cut(s) 11, 171, 936, 1122, 1140, 1373
Tru9I TTAA 6 cut(s) 11, 171, 936, 1122, 1140, 1373
TscAI CASTG 4 cut(s) 925, 985, 1075, 1114
TseFI GTSAC 3 cut(s) 319, 568, 1261
TseI GCWGC 1 cut(s) 1319
Tsp45I GTSAC 3 cut(s) 319, 568, 1261
TspDTI ATGAA 3 cut(s) 401, 1010, 1435
TspGWI ACGGA 2 cut(s) 499, 842
TspRI CASTG 4 cut(s) 925, 985, 1075, 1114
Tth111I GACNNNGTC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 1273
XapI RAATTY 3 cut(s) 167, 739, 859
XhoI CTCGAG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 1394
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 8 cut(s) 510, 518, 534, 614, 648, 660, 1173, 1470
ZrmI AGTACT 2 cut(s) 334, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.